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runBNG compare does not generate .xmap, _q.cmap and _r.cmap #36

@Julia-zhulinying

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@Julia-zhulinying

Hello! When using runBNG to align the de novo assembled cmap to the reference cmap (hg38), the output is not the trio files: .xmap, _q.cmap and _r.cmap, but the output is only a .stdout file. I need the trio files. Please help! Thanks!

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