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new features #2

@trvinh

Description

@trvinh
  • check for valid ref spec
  • function to print list of available ref spec
  • join full reports of all modes
  • join phyloprofile for multiple queries
  • split cutoff calculation out of fcat
  • cutoff file for length
  • domain files
  • add profile for missing groups
  • cutoff and value in full report
  • sort and color genes by pass and fail score modes
  • sort geneID by their positions in genome

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