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CellProfiling
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Squid
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Squid
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.github
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workflows
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main.yml
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master
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workflows
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main.yml
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name: Install Environment and Run Tests
on:
push:
branches: master
pull_request:
jobs:
install-and-test:
permissions:
contents: read
runs-on: ubuntu-22.04
steps:
- name: Checkout the Squid repo
uses: actions/checkout@v4
- name: Run the setup script for Ubuntu 22.04
run: ./setup_22.04.sh
working-directory: ./software
env:
SRC_ROOT: "${{ runner.temp }}"
- name: Run the cuda setup script
run: ./setup_cuda_22.04.sh
working-directory: ./software
env:
SRC_ROOT: "${{ runner.temp }}"
# NOTE(imo): Our setup script checks out the repository, so we actually check it out twice.
# Once to get the script (using actions/checkout@v4), then again via the script. We want to do
# all of our actually testing in the one the script checks out, though, so make sure we set SRC_ROOT
# properly and then use the same working directory for running within the setup script's checkout
- name: "TEMPORARY: copy a valid config into the repo software root"
run: cp configurations/configuration_Squid+.ini .
working-directory: "${{ runner.temp }}/Squid/software"
- name: Run the tests
run: python3 -m pytest
working-directory: "${{ runner.temp }}/Squid/software"
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