From cdb17cfa0d3174ccb094b9ebc61e0b8d028c460a Mon Sep 17 00:00:00 2001 From: O957 <127630341+O957@users.noreply.github.com> Date: Fri, 19 Jun 2026 16:20:54 -0400 Subject: [PATCH] chore: fix misspellings --- app/common.py | 4 ++-- genomics-apps/data/product.csv | 4 ++-- genomics-apps/getVariants.py | 6 +++--- genomics-apps/simpleApp.py | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-) diff --git a/app/common.py b/app/common.py index 36cd85522..4e37de790 100644 --- a/app/common.py +++ b/app/common.py @@ -133,7 +133,7 @@ def key_func(k): return k['CHROMOSOME']['RefSeq'] -def is_overlaping(a, b): +def is_overlapping(a, b): if b['RANGE']['L'] >= a['RANGE']['L'] and b['RANGE']['L'] <= a['RANGE']['H']: return True else: @@ -148,7 +148,7 @@ def merge(arr): for i in range(1, len(arr)): pop_element = merged_list.pop() - if is_overlaping(pop_element, arr[i]): + if is_overlapping(pop_element, arr[i]): pop_element['RANGE']['H'] = max(pop_element['RANGE']['H'], arr[i]['RANGE']['H']) merged_list.append(pop_element) else: diff --git a/genomics-apps/data/product.csv b/genomics-apps/data/product.csv index 42cf1a071..c748341ca 100644 --- a/genomics-apps/data/product.csv +++ b/genomics-apps/data/product.csv @@ -478,7 +478,7 @@ "2670","Codeine","756277","Chlorpheniramine 0.4 MG/ML / Codeine 2 MG/ML / iodinated glycerol 3 MG/ML Oral Solution","SCD" "2670","Codeine","1113064","Chlorcyclizine hydrochloride 5 MG/ML / Codeine Phosphate 2 MG/ML / Phenylephrine Hydrochloride 2 MG/ML Oral Solution [Nasotuss]","SBD" "2670","Codeine","313927","Chlorpheniramine 0.4 MG/ML / Codeine 2 MG/ML / Phenylephrine 2 MG/ML Oral Solution","SCD" -"2670","Codeine","1242558","Chlorcyclizine hydrochloride 2.5 MG/ML / Codeine Phosphate 1.8 MG/ML / Pseudoephedrine Hydrochloride 6 MG/ML Oral Solution [Statuss Green Reformulated Jan 2012]","SBD" +"2670","Codeine","1242558","Chlorcyclizine hydrochloride 2.5 MG/ML / Codeine Phosphate 1.8 MG/ML / Pseudoephedrine Hydrochloride 6 MG/ML Oral Solution [Status Green Reformulated Jan 2012]","SBD" "2670","Codeine","1235862","Chlorcyclizine hydrochloride 2.5 MG/ML / Codeine Phosphate 1.8 MG/ML / Pseudoephedrine Hydrochloride 6 MG/ML Oral Solution","SCD" "2670","Codeine","1113053","Chlorcyclizine hydrochloride 1.88 MG/ML / Codeine Phosphate 2 MG/ML Oral Solution [Notuss-NX]","SBD" "2670","Codeine","1113051","Chlorcyclizine hydrochloride 1.88 MG/ML / Codeine Phosphate 2 MG/ML Oral Solution","SCD" @@ -661,7 +661,7 @@ "2670","Codeine","995485","Codeine Phosphate 2 MG/ML / Guaifenesin 40 MG/ML Oral Solution [Tusso C]","SBD" "2670","Codeine","996650","Codeine Phosphate 2 MG/ML / Pseudoephedrine Hydrochloride 6 MG/ML / Triprolidine Hydrochloride 0.25 MG/ML Oral Solution [Triacin C]","SBD" "2670","Codeine","996514","Codeine Phosphate 2 MG/ML / Guaifenesin 60 MG/ML Oral Solution [Tussi Organidin]","SBD" -"2670","Codeine","996546","Codeine Phosphate 2 MG/ML / Guaifenesin 40 MG/ML / Phenylpropanolamine 2.5 MG/ML Oral Solution [Statuss]","SBD" +"2670","Codeine","996546","Codeine Phosphate 2 MG/ML / Guaifenesin 40 MG/ML / Phenylpropanolamine 2.5 MG/ML Oral Solution [Status]","SBD" "2670","Codeine","582337","Codeine Phosphate 2 MG/ML / Guaifenesin 20 MG/ML Oral Solution [Guaitussin AC]","SBD" "2670","Codeine","995932","Codeine Phosphate 2 MG/ML / Guaifenesin 20 MG/ML Oral Solution [Brontex]","SBD" "2670","Codeine","995956","Codeine Phosphate 2 MG/ML / Guaifenesin 20 MG/ML Oral Solution [Cheracol with Codeine]","SBD" diff --git a/genomics-apps/getVariants.py b/genomics-apps/getVariants.py index b7906b01b..a952f6755 100644 --- a/genomics-apps/getVariants.py +++ b/genomics-apps/getVariants.py @@ -79,7 +79,7 @@ def findSubjectHaplotypes(subject, geneId): "Genotype": genotype, "Allelic State": allelicState, "Copy Number": copyNumber, - "Allele Frequeny": alleleFreq}) + "Allele Frequency": alleleFreq}) # get and parse structural variants response = findSubjectStructuralIntersectingVariants(subject, range) if response.status_code == 200: @@ -112,7 +112,7 @@ def findSubjectHaplotypes(subject, geneId): "Genotype": genotype, "Allelic State": allelicState, "Copy Number": copyNumber, - "Allele Frequeny": alleleFreq}) + "Allele Frequency": alleleFreq}) # get and parse haplotypes response = findSubjectHaplotypes(subject, geneId) if response.status_code == 200: @@ -130,7 +130,7 @@ def findSubjectHaplotypes(subject, geneId): "Genotype": genotype, "Allelic State": allelicState, "Copy Number": copyNumber, - "Allele Frequeny": alleleFreq}) + "Allele Frequency": alleleFreq}) data = (pd.DataFrame(variantList)) AgGrid(data, enable_enterprise_modules=True, update_mode="value_changed", allow_unsafe_jscode=True) diff --git a/genomics-apps/simpleApp.py b/genomics-apps/simpleApp.py index 34fa7bda8..4e8f986ba 100644 --- a/genomics-apps/simpleApp.py +++ b/genomics-apps/simpleApp.py @@ -45,7 +45,7 @@ def findSubjectVariants(subject, range): SPDI = k["valueCodeableConcept"]["coding"][0]["display"] elif k["code"]["coding"][0]["code"] == "81258-6": alleleFreq = k["valueQuantity"]["value"] - variantList.append({"SPDI": SPDI, "Source Class": sourceClass, "Allelic State": allelicState, "Allele Frequeny": alleleFreq}) + variantList.append({"SPDI": SPDI, "Source Class": sourceClass, "Allelic State": allelicState, "Allele Frequency": alleleFreq}) data = (pd.DataFrame(variantList)) with col2: AgGrid(data, enable_enterprise_modules=True, update_mode="value_changed", allow_unsafe_jscode=True)