Merge branch 'main' into source

Author: icweaver

.github/workflows/CI.yml

@@ -1,4 +1,4 @@
-name: Test JuliaAstro packages
+name: Test JuliaAstro
 
 on:
   push:
@@ -14,12 +14,12 @@ jobs:
       fail-fast: false
       matrix:
         version:
-          - '1' # Leave this line unchanged. '1' will automatically expand to the latest stable 1.x release of Julia.
-          - 'nightly'
+          - "1" # Leave this line unchanged. '1' will automatically expand to the latest stable 1.x release of Julia.
+          - "pre"
         os:
           - ubuntu-latest
         arch:
-          - x64
+          - default
     steps:
       - uses: actions/checkout@v5
       - uses: julia-actions/setup-julia@v2

.github/workflows/Documentation.yml

@@ -7,7 +7,7 @@ on:
     - cron:  '15 2 * * *' # 2:15 AM UTC every day
 jobs:
   docs:
-    name: MultiDocumentation
+    name: build
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v5

README.md

@@ -1,10 +1,10 @@
 JuliaAstro.github.io
 ====================
 
-[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliaastro.org/)
-[![Build website](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/Documentation.yml/badge.svg)](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/Documentation.yml)
-[![pages-build-deployment](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/pages/pages-build-deployment/badge.svg?branch=gh-pages)](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/pages/pages-build-deployment)
-[![Test JuliaAstro packages](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/CI.yml/badge.svg)](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/CI.yml)
+[![docs](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliaastro.org/)
+[![Build](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/Documentation.yml/badge.svg)](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/Documentation.yml)
+[![Deploy](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/pages/pages-build-deployment/badge.svg?branch=gh-pages)](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/pages/pages-build-deployment)
+[![Test JuliaAstro](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/CI.yml/badge.svg)](https://github.com/JuliaAstro/JuliaAstro.github.io/actions/workflows/CI.yml)
 
 ## Description
 

docs/case_studies/config.json

@@ -4,6 +4,7 @@
     "order": [
         "solar_system",
         "exoplanets",
-        "stars_and_galaxies"
+        "stars_and_galaxies",
+        "cosmology"
     ]
 }

docs/case_studies/cosmology/config.json

@@ -0,0 +1,5 @@
+{
+    "order": [
+        "marcobonici-effort.md"
+    ]
+}

docs/case_studies/cosmology/marcobonici-effort.md

@@ -0,0 +1,25 @@
+---
+title: "Effort.jl: a fast and differentiable emulator for the Effective Field Theory of the Large Scale Structure of the Universe"
+id: "marcobonici-effort"
+description: "See how this team uses Julia to emulate cosmological observables at the largest scales."
+author: "[CosmologicalEmulators/Effort.jl](https://github.com/marcobonici)"
+date: "2025-09-16"
+---
+
+This team has developed a novel and efficient emulator designed for the Effective Field Theory of Large-Scale Structure (EFTofLSS).
+
+**Package: [CosmologicalEmulators/Effort.jl](https://github.com/CosmologicalEmulators/Effort.jl)**
+
+![image](https://raw.githubusercontent.com/CosmologicalEmulators/Effort.jl/refs/heads/main/docs/src/assets/logo.svg)
+
+Their implementation leverages state-of-the-art numerical methods and machine learning techniques from the [SciML](https://sciml.ai/) and [Turing.jl](https://turinglang.org/) ecosystems to create surrogate models of the large-scale structure of the Universe. These models integrate well with gradient-based samplers to achieve exceptional computational performance without sacrificing accuracy, which will be essential for analyzing next-generation cosmological survey data from, e.g., the Dark Energy Spectroscopic Instrument ([DESI](https://www.desi.lbl.gov/)), and [Euclid](https://www.esa.int/Science_Exploration/Space_Science/Euclid).
+
+Read the [_404 Media_ news release](https://www.404media.co/a-vast-cosmic-web-connects-the-universe-really-now-we-can-emulate-it/) on this package, or read from an up-to-date list of associated publications from the [CosmologicalEmulators organization here](https://github.com/CosmologicalEmulators#publications) for more.
+
+> 1. Bonici, M., D'Amico, G., Bel, J., & Carbone, C. (2025). Effort.jl: a fast and differentiable emulator for the Effective Field Theory of the Large Scale Structure of the Universe. [Journal of Cosmology and Astroparticle Physics, 2025(9), 044](https://iopscience.iop.org/article/10.1088/1475-7516/2025/09/044?ref=404media.co). [[ADS]](https://ui.adsabs.harvard.edu/abs/2025JCAP...09..044B/abstract)
+> 2. Morawetz, J., Zhang, H., Bonici, M., Percival, W., Crespi, A, et al., (2025). Frequentist Cosmological Constraints from Full-Shape Clustering Measurements in DESI DR1. [arXiv:2508.11811](https://arxiv.org/abs/2508.11811). [[ADS]](https://ui.adsabs.harvard.edu/abs/2025arXiv250811811M/abstract)
+> 3. H. Zhang, M. Bonici, A. Rocher, W. J. Percival, A. de Mattia, et al., (2025). Enhancing DESI DR1 Full-Shape analyses using HOD-informed priors. [arXiv:2504.10407](https://arxiv.org/abs/2504.10407). [[ADS]](https://ui.adsabs.harvard.edu/abs/2025arXiv250410407Z/abstract)
+> 4. Zhang, H., Bonici, M., D'Amico, G., Paradiso, S., & Percival, W. (2025). HOD-informed prior for EFT-based full-shape analyses of LSS. [Journal of Cosmology and Astroparticle Physics, 2025(4), 041](https://iopscience.iop.org/article/10.1088/1475-7516/2025/04/041). [[ADS]](https://ui.adsabs.harvard.edu/abs/2025arXiv250410407Z/abstract)
+> 5. Paradiso, S., Bonici, M., Chen, M., Percival, W., D'Amico, G., Zhang, H., & McGee, G. (2025). Reducing nuisance prior sensitivity via non-linear reparameterization, with application to EFT analyses of large-scale structure. [Journal of Cosmology and Astroparticle Physics, 2025(7), 005](https://iopscience.iop.org/article/10.1088/1475-7516/2025/07/005). [[ADS]](https://ui.adsabs.harvard.edu/abs/2025JCAP...07..005P/abstract)
+> 6. Baleato Lizancos, A., Seljak, U., Karamanis, M., Bonici, M., & Ferraro, S. (2025). Selecting samples of galaxies with fewer Fingers-of-God. [Journal of Cosmology and Astroparticle Physics, 2025(7), 014](https://iopscience.iop.org/article/10.1088/1475-7516/2025/07/014). [[ADS]](https://ui.adsabs.harvard.edu/abs/2025JCAP...07..014B/abstract)
+

docs/case_studies/index.md

@@ -1,4 +1,4 @@
-# Case studies
+# Case Studies
 
 This page includes some real world examples of JuliaAstro and other aero/astro packages being used. This is a constantly evolving document, PRs and issues are welcome!
 

docs/make.jl

@@ -67,7 +67,7 @@ makedocs(
     doctest = false,
     format = Documenter.HTML(;
         mathengine,
-        prettyurls = get(ENV, "CI", "false") == "true",
+        prettyurls = true,
         canonical = "https://JuliaAstro.org/",
         assets = String[
             "assets/styles.css",
@@ -88,8 +88,13 @@ makedocs(
             ],
         ],
         "Package Ecosystem" => "ecosystem.md",
-        "Comparison with Astropy" => "comparison.md",
         case_studies,
+        "Comparison with Astropy" => "comparison.md",
+        "Community" => [
+            "community/juliaastro_community.md",
+            "community/governance.md",
+            "community/roadmap.md",
+        ],
     ],
     warnonly = [:missing_docs],
     plugins = [links],
@@ -182,8 +187,9 @@ MultiDocumenter.make(
 )
 @info "Aggregate build complete"
 
-# Remove dev docs from JuliaAstro site
+# Remove dev/latest docs from JuliaAstro site
 rm.(glob(joinpath("*", "dev"), outpath); recursive=true)
+rm.(glob(joinpath("*", "latest*"), outpath); recursive=true)
 
 # Download logo
 # assets_dir = joinpath(outpath, "assets")