diff --git a/mediatype/index.html b/mediatype/index.html index 35f9e06..68249ac 100644 --- a/mediatype/index.html +++ b/mediatype/index.html @@ -52,7 +52,7 @@

  • .html for having the data in HTML.

    • All these resources defining media types can be used for specifying particular formats (e.g., by means of the DCTerms property dcterms:format) that a certain entity, such as a book or a dataset, can have. In the FRBR-align Bibliographic Ontology (FaBiO), the specification of such format is a typical information associated to the manifestation level (i.e., fabio:Manifestation) of an entity.

    -

    A dump of all these data is available on figshare.

    +

    A dump of all these data is available on figshare.

    Please do not hesitate to contact us for questions and additional information about this LOD dataset.

    diff --git a/spar/about.html b/spar/about.html index 2662062..11db48f 100644 --- a/spar/about.html +++ b/spar/about.html @@ -85,9 +85,9 @@

    The original motivation for creating the first of these ontologies, the Citation Typing Ontology (CiTO), was provided by the semantic publishing work undertaken in 2008, described in:

    -

    Shotton, D., Portwin, K., Klyne, G., Miles, A. (2009). Adventures in Semantic Publishing: Exemplar Semantic Enhancements of a Research Article. In PLoS Computational Biology, 5(4): e1000361. http://dx.doi.org/10.1371/journal.pcbi.1000361

    +

    Shotton, D., Portwin, K., Klyne, G., Miles, A. (2009). Adventures in Semantic Publishing: Exemplar Semantic Enhancements of a Research Article. In PLoS Computational Biology, 5(4): e1000361. http://dx.doi.org/10.1371/journal.pcbi.1000361

    The version 1.6 of the CiTO ontology was developed by David Shotton from that work and published in 2009 in the following paper:

    -

    Shotton, D. (2010). CiTO, the Citation Typing Ontology. In Journal of Biomedical Semantics, 1 (Suppl 1):S6. http://dx.doi.org/10.1186/2041-1480-1-S1-S6

    +

    Shotton, D. (2010). CiTO, the Citation Typing Ontology. In Journal of Biomedical Semantics, 1 (Suppl 1):S6. http://dx.doi.org/10.1186/2041-1480-1-S1-S6

    In the second half of 2010, Silvio Peroni, a Ph.D. student at that time, came for six months as an intern from the University of Bologna to David's research group at the University of Oxford. In those six months, Silvio and David separated out from CiTO those aspects describing bibliographic entities into FaBiO, the FRBR-aligned Bibliographic Ontology, those aspects describing the quantification of citations into C4O, the Citation Counting and Context Characterization Ontology, and those aspects describing the status of publications into PSO, the Publications Status Ontology, leaving the current version of CiTO (v2) with the sole role of describing the nature and character of the citations themselves. In addition, during that time, they worked intimately and intensely together in a way that was remarkable and mutually beneficial, developing a unique corpus of new work relating to Semantic Publishing, i.e., the Semantic Publishing and Referencing (SPAR) Ontologies.

    Following Silvio's return to Bologna, they continued to collaborate actively. Their actual corpus of work includes new ontologies that are finding increasing use worldwide, tools to assist third parties in the creation of ontologies (e.g., LODE and Graffoo), and mappings of document markup and metadata standards to RDF (e.g., the JATS to SPAR work). This work continues to expand, as the list of new journal articles and conference papers about SPAR Ontologies attests.

    diff --git a/spar/ontology_descriptions/doco.txt b/spar/ontology_descriptions/doco.txt index 8e81a74..aac032d 100644 --- a/spar/ontology_descriptions/doco.txt +++ b/spar/ontology_descriptions/doco.txt @@ -14,6 +14,6 @@ The creation of DoCO was undertaken by studying different corpora of documents (mainly scientific literature and web documents on different topics) and publishers' guidelines, from two perspectives – the structural and the rhetorical. In addition, some informal interviews have been done with researchers in different fields and with academic publishers, in order to gather as much information as possible about document components and their use. -DoCO imports the [Pattern Ontology](http://www.essepuntato.it/2008/12/pattern) that describes structural patterns (introduced in the paper entitled "[Dealing with structural patterns of XML documents](http://dx.doi.org/10.1002/asi.23088)"), and the [Discourse Element Ontology (DEO)](/ontologies/deo), which was developed with DoCO and describes rhetorical components. Additionally, it also defines hybrid classes describing elements that are both structural and rhetorical in nature, such as paragraph (``doco:Paragraph``), section (``doco:Section``) or list (``doco:List``). DoCO is also aligned with the [SALT Rhetorical Ontology](http://lov.okfn.org/dataset/lov/vocabs/sro) and the [Ontology of Rhetorical Blocks (ORB)](http://www.w3.org/2001/sw/hcls/notes/orb/). A concise summary of the main DoCO classes and its imported ontologies is shown in the following figure. +DoCO imports the [Pattern Ontology](http://www.essepuntato.it/2008/12/pattern) that describes structural patterns (introduced in the paper entitled "[Dealing with structural patterns of XML documents](https://doi.org/10.1002/asi.23088)"), and the [Discourse Element Ontology (DEO)](/ontologies/deo), which was developed with DoCO and describes rhetorical components. Additionally, it also defines hybrid classes describing elements that are both structural and rhetorical in nature, such as paragraph (``doco:Paragraph``), section (``doco:Section``) or list (``doco:List``). DoCO is also aligned with the [SALT Rhetorical Ontology](http://lov.okfn.org/dataset/lov/vocabs/sro) and the [Ontology of Rhetorical Blocks (ORB)](http://www.w3.org/2001/sw/hcls/notes/orb/). A concise summary of the main DoCO classes and its imported ontologies is shown in the following figure. A summary of the main classes defined in DoCO and its related imported ontologies. diff --git a/spar/ontology_examples/bido.txt b/spar/ontology_examples/bido.txt index 937e4aa..7f21654 100644 --- a/spar/ontology_examples/bido.txt +++ b/spar/ontology_examples/bido.txt @@ -32,7 +32,7 @@ journal:journal-of-web-semantics a fabio:Journal ; :thomson-reuters a foaf:Organization ; foaf:homepace . -#cite Peroni, Silvio (2015): Example of use of BiDO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1559974 +#cite Peroni, Silvio (2015): Example of use of BiDO #1. figshare. https://doi.org/10.6084/m9.figshare.1559974 #id bido_2 @@ -87,7 +87,7 @@ For instance, in the example we assign a particular research category (defined m bido:hasStrength bido:low ; bido:hasGrowth bido:logarithmic . -#cite Peroni, Silvio (2015): Example of use of BiDO #2. figshare. http://dx.doi.org/10.6084/m9.figshare.1559973 +#cite Peroni, Silvio (2015): Example of use of BiDO #2. figshare. https://doi.org/10.6084/m9.figshare.1559973 #id bido_3 @@ -146,4 +146,4 @@ conf:cade1980-cff-rank a bido:BibliometricDataInTime ; "Computing Research and Education Association of Australasia" ; foaf:homepage . -#cite Peroni, Silvio (2015): Example of use of BiDO #3. figshare. http://dx.doi.org/10.6084/m9.figshare.1559979 +#cite Peroni, Silvio (2015): Example of use of BiDO #3. figshare. https://doi.org/10.6084/m9.figshare.1559979 diff --git a/spar/ontology_examples/biro.txt b/spar/ontology_examples/biro.txt index 71151b7..61d5e31 100644 --- a/spar/ontology_examples/biro.txt +++ b/spar/ontology_examples/biro.txt @@ -2,7 +2,7 @@ #title Defining bibliographic references and reference lists -#description The paper entitled "[Intertextual semantics: A semantics for information design](http://dx.doi.org/10.1002/asi.21134)" contains a list of references, each of them referring to a particular published article. For instance, the content of a particular bibliographic reference contained in that list, and referring to the paper "[Towards a semantics for XML markup](http://dx.doi.org/10.1145/585058.585081)", is: +#description The paper entitled "[Intertextual semantics: A semantics for information design](https://doi.org/10.1002/asi.21134)" contains a list of references, each of them referring to a particular published article. For instance, the content of a particular bibliographic reference contained in that list, and referring to the paper "[Towards a semantics for XML markup](http://dx.doi.org/10.1145/585058.585081)", is: > Renear, A., Dubin, D. & Sperberg-McQueen, C.M. (2002). Towards a semantics for XML markup. In E. Mudson (Chair), Proceedings of the ACM Symposium on Document Engineering, (pp. 119-126). New York: ACM Press. @@ -14,7 +14,7 @@ A first necessary step to release bibliographic references like the above one in @prefix dcterms: . @prefix frbr: . - + frbr:part :reference-list . :reference-list a biro:ReferenceList ; @@ -54,9 +54,9 @@ A first necessary step to release bibliographic references like the above one in In E. Mudson (Chair), Proceedings of the ACM Symposium on Document Engineering, (pp. 119-126). New York: ACM Press." ; - biro:references . + biro:references . -#cite Peroni, Silvio (2015): Example of use of BiRO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1534592 +#cite Peroni, Silvio (2015): Example of use of BiRO #1. figshare. https://doi.org/10.6084/m9.figshare.1534592 #id biro_2 @@ -110,7 +110,7 @@ This pattern allows one to describe each string of a bibliographic reference as foaf:givenName "Allen" ; foaf:familyName "Renear" . -#cite Peroni, Silvio (2015): Example of use of BiRO #2. figshare. http://dx.doi.org/10.6084/m9.figshare.1534651 +#cite Peroni, Silvio (2015): Example of use of BiRO #2. figshare. https://doi.org/10.6084/m9.figshare.1534651 #id biro_3 @@ -119,13 +119,13 @@ This pattern allows one to describe each string of a bibliographic reference as #description Another approach, alternative to the one presented in the [second BiRO example](#biro_2), to deal with the semantic enhancement of bibliographic references is to use [EARMARK](http://www.essepuntato.it/2008/12/earmark) ranges for associating appropriate semantic statements to textual fragments, as illustrated in the following paper: -

    Peroni, S., Gangemi, A., & Vitali, F. (2011). Dealing with markup semantics. In Proceedings the 7th International Conference on Semantic Systems (i-Semantics 2011): 111–118. http://dx.doi.org/10.1145/2063518.2063533

    +

    Peroni, S., Gangemi, A., & Vitali, F. (2011). Dealing with markup semantics. In Proceedings the 7th International Conference on Semantic Systems (i-Semantics 2011): 111–118. https://doi.org/10.1145/2063518.2063533

    For instance, the reference introduced in the [first BiRO example](#biro_1) can be encoded as an EARMARK document. We first need a particular string container called docuverse in EARMARK (corresponding to the class ``earmark:StringDocuverse``). This entity allows one to define the text of the reference. Then, we can define ranges (the class ``earmark:PointerRange``) for each string we want to use in order to describe the bibliographic reference according to [BiRO](/ontologies/biro). Furthermore, using the [LA-EARMARK](http://www.essepuntato.it/2013/06/la-earmark), and extension of EARMARK for expressing markup semantics, it is possible to link EARMARK ranges to their formal meaning and to the particular object referenced by such strings, as described in the following work: -

    Barabucci, G., Di Iorio, A., Peroni, S., Poggi, F., & Vitali, F. (2013). Annotations with EARMARK in practice: a fairy tale. In Proceedings of DH-CASE 2013. http://dx.doi.org/10.1145/2517978.2517990

    +

    Barabucci, G., Di Iorio, A., Peroni, S., Poggi, F., & Vitali, F. (2013). Annotations with EARMARK in practice: a fairy tale. In Proceedings of DH-CASE 2013. https://doi.org/10.1145/2517978.2517990

    We can say that a certain range (i.e., a string) actually denotes (``la:denotes``) a particular concrete object, i.e., a particular person identified by a certain IRI. Specifically, that range expresses (``la:expresses``) a particular meaning (``la:Meaning``), i.e., the fact that the string (as well as the denoted object) refers to something being an author of that paper. @@ -203,4 +203,4 @@ We can say that a certain range (i.e., a string) actually denotes (``la:denotes` foaf:givenName "Allen" ; foaf:familyName "Renear" . -#cite Peroni, Silvio (2015): Example of use of BiRO #3. figshare. http://dx.doi.org/10.6084/m9.figshare.1535530 +#cite Peroni, Silvio (2015): Example of use of BiRO #3. figshare. https://doi.org/10.6084/m9.figshare.1535530 diff --git a/spar/ontology_examples/c4o.txt b/spar/ontology_examples/c4o.txt index f6b954e..a8707f5 100644 --- a/spar/ontology_examples/c4o.txt +++ b/spar/ontology_examples/c4o.txt @@ -2,7 +2,7 @@ #title Describing citation contexts -#description In a particular sentence of the paper entitled "[Intertextual semantics: A semantics for information design](http://dx.doi.org/10.1002/asi.21134)" there is a citation to the paper "[Towards a semantics for XML markup](http://dx.doi.org/10.1145/585058.585081)" made through a in-text reference pointer to a specific bibliographic reference. +#description In a particular sentence of the paper entitled "[Intertextual semantics: A semantics for information design](https://doi.org/10.1002/asi.21134)" there is a citation to the paper "[Towards a semantics for XML markup](http://dx.doi.org/10.1145/585058.585081)" made through a in-text reference pointer to a specific bibliographic reference. [C4O](/ontologies/c4o) enables ontological descriptions of the citation context where an in-text reference pointer appears in the citing document, and allows one to relate that context to relevant textual passages in the cited document. @@ -13,7 +13,7 @@ @prefix doco: . @prefix frbr: . - + frbr:part :in-text-renear02 , :renear02 . :in-text-renear02 a c4o:InTextReferencePointer ; @@ -26,14 +26,14 @@ Towards a semantics for XML markup. In E. Mudson (Chair), Proceedings of the ACM Symposium on Document Engineering, (pp. 119-126). New York: ACM Press." ; - biro:references . + biro:references . :citation-sentence a doco:Sentence ; c4o:hasContent "Renear, Dubin, and Sperberg-McQueen (2002, pp. 121-122) proposed a formal semantic approach for structured documents." . - + frbr:part :cited-sentence . :cited-sentence a doco:Sentence ; @@ -43,7 +43,7 @@ those structures, relationships, and properties explicit." ; c4o:isRelevantTo :citation-sentence . -#cite Peroni, Silvio (2015): Example of use of C4O #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1536253 +#cite Peroni, Silvio (2015): Example of use of C4O #1. figshare. https://doi.org/10.6084/m9.figshare.1536253 #id c4o_2 @@ -52,7 +52,7 @@ #description [C4O](/ontologies/c4o) allows one to record the number of citations a cited entity has received globally (property ``c4o:hasGlobalCitationCount``), as determined by a bibliographic information resource (property ``c4o:hasGlobalCountSource``) such as [Google Scholar](http://scholar.google.com), [Scopus](http://www.scopus.com) or [Web of Knowledge](http://apps.isiknowledge.com) on a particular date (property ``c4o:hasGlobalCountDate``). -For instance we can write a set of assertions according to C4O that describe how many times the reference - contained in the paper "[Intertextual semantics: A semantics for information design](http://dx.doi.org/10.1002/asi.21134)" and referring to the paper "[Towards a semantics for XML markup](http://dx.doi.org/10.1145/585058.585081)" - is used within the citing article and how much the cited article is globally cited according to Google Scholar. +For instance we can write a set of assertions according to C4O that describe how many times the reference - contained in the paper "[Intertextual semantics: A semantics for information design](https://doi.org/10.1002/asi.21134)" and referring to the paper "[Towards a semantics for XML markup](http://dx.doi.org/10.1145/585058.585081)" - is used within the citing article and how much the cited article is globally cited according to Google Scholar. #code @prefix : . @prefix biro: . @@ -63,7 +63,7 @@ For instance we can write a set of assertions according to C4O that describe how @prefix frbr: . @prefix xsd: . - + frbr:part :renear02 . :renear02 a biro:BibliographicReference ; @@ -72,10 +72,10 @@ For instance we can write a set of assertions according to C4O that describe how Towards a semantics for XML markup. In E. Mudson (Chair), Proceedings of the ACM Symposium on Document Engineering, (pp. 119-126). New York: ACM Press." ; - biro:references ; + biro:references ; c4o:hasInTextCitationFrequency "1"^^xsd:nonNegativeInteger . - + c4o:hasGlobalCitationFrequency :g-citation-2014-03-17 . :g-citation-2014-03-17 a c4o:GlobalCitationCount ; @@ -86,4 +86,4 @@ For instance we can write a set of assertions according to C4O that describe how :google-scholar a c4o:BibliographicInformationSource ; foaf:homepage . -#cite Peroni, Silvio (2015): Example of use of C4O #2. figshare. http://dx.doi.org/10.6084/m9.figshare.1536254 +#cite Peroni, Silvio (2015): Example of use of C4O #2. figshare. https://doi.org/10.6084/m9.figshare.1536254 diff --git a/spar/ontology_examples/cito.txt b/spar/ontology_examples/cito.txt index 6189533..3f996cf 100644 --- a/spar/ontology_examples/cito.txt +++ b/spar/ontology_examples/cito.txt @@ -17,7 +17,7 @@ cito:hasCitationCharacterization cito:extends ; cito:hasCitedEntity :paper-b . -#cite Peroni, Silvio (2015): Example of use of CiTO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1512816 +#cite Peroni, Silvio (2015): Example of use of CiTO #1. figshare. https://doi.org/10.6084/m9.figshare.1512816 #id cito_2 @@ -51,7 +51,7 @@ The whole example has been extracted from the blog post ["Extending CiTO to enab cito:hasCitationCharacterization cito:cites ; cito:hasCitedEntity :paper-b . -#cite Peroni, Silvio (2015): Example of use of CiTO #2. figshare. http://dx.doi.org/10.6084/m9.figshare.1512817 +#cite Peroni, Silvio (2015): Example of use of CiTO #2. figshare. https://doi.org/10.6084/m9.figshare.1512817 #id cito_3 @@ -81,4 +81,4 @@ The [Open Annotation Data Model Ontology](http://www.w3.org/ns/oa) can be used t :in-text-ref-pointer a c4o:InTextReferencePointer ; c4o:hasContent "[6]" . -#cite Peroni, Silvio (2015): Example of use of CiTO #3. figshare. http://dx.doi.org/10.6084/m9.figshare.1512818 +#cite Peroni, Silvio (2015): Example of use of CiTO #3. figshare. https://doi.org/10.6084/m9.figshare.1512818 diff --git a/spar/ontology_examples/datacite.txt b/spar/ontology_examples/datacite.txt index cc6f74c..e90a0d5 100644 --- a/spar/ontology_examples/datacite.txt +++ b/spar/ontology_examples/datacite.txt @@ -12,15 +12,15 @@ @prefix literal: . @prefix orcid: . - a fabio:Dataset ; + a fabio:Dataset ; datacite:hasIdentifier :dataset-doi ; dcterms:creator orcid:0000-0002-5159-9717 , orcid:0000-0002-7811-3617 ; datacite:hasDescription - . + . - + a fabio:JournalArticle ; datacite:hasIdentifier :paper-doi ; dcterms:creator @@ -52,7 +52,7 @@ orcid:0000-0002-7811-3617 a foaf:Person ; literal:hasLiteralValue "0000-0002-7811-3617" ; datacite:usesIdentifierScheme datacite:orcid . -#cite Peroni, Silvio (2015): Example of use of DataCite #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1554708 +#cite Peroni, Silvio (2015): Example of use of DataCite #1. figshare. https://doi.org/10.6084/m9.figshare.1554708 #id datacite_2 @@ -61,7 +61,7 @@ orcid:0000-0002-7811-3617 a foaf:Person ; #description This Turtle file is the RDF converted version of the exemplar DataCite XML document available at http://schema.datacite.org/meta/kernel-3.1/example/datacite-example-full-v3.1.xml. The conversion has been made by taking into account the guidelines available at the following document: -

    Peroni, S., Shotton, D., Ashton, J., Barton, A. J., Gramsbergen, E., Jacquemot, M.-C. (2016). DataCite2RDF: Mapping DataCite Metadata Schema 3.1 Terms to RDF. Version 3.2. http://dx.doi.org/10.6084/m9.figshare.2075356

    +

    Peroni, S., Shotton, D., Ashton, J., Barton, A. J., Gramsbergen, E., Jacquemot, M.-C. (2016). DataCite2RDF: Mapping DataCite Metadata Schema 3.1 Terms to RDF. Version 3.2. https://doi.org/10.6084/m9.figshare.2075356

    #code @prefix : . @prefix cito: . @@ -211,4 +211,4 @@ orcid:0000-0002-7811-3617 a foaf:Person ; geo:asWKT "POLYGON(41.090 -71.032, 41.090 -68.211, 42.893 -68.211, 42.893 -71.032, 41.090 -71.032)"^^geo:wktLiteral . -#cite Peroni, Silvio (2016): Example of use of DataCite #2. figshare. https://dx.doi.org/10.6084/m9.figshare.2075353 +#cite Peroni, Silvio (2016): Example of use of DataCite #2. figshare. https://doi.org/10.6084/m9.figshare.2075353 diff --git a/spar/ontology_examples/deo.txt b/spar/ontology_examples/deo.txt index fcd193d..1b38ac3 100644 --- a/spar/ontology_examples/deo.txt +++ b/spar/ontology_examples/deo.txt @@ -72,4 +72,4 @@ By means of RDFa, [DEO](/ontologies/deo) can be used in RASH documents in order -#cite Peroni, Silvio (2015): Example of use of DEO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1540796 +#cite Peroni, Silvio (2015): Example of use of DEO #1. figshare. https://doi.org/10.6084/m9.figshare.1540796 diff --git a/spar/ontology_examples/doco.txt b/spar/ontology_examples/doco.txt index a7bb425..88da058 100644 --- a/spar/ontology_examples/doco.txt +++ b/spar/ontology_examples/doco.txt @@ -98,7 +98,7 @@ # ... -#cite Peroni, Silvio (2015): Example of use of DoCO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1513725 +#cite Peroni, Silvio (2015): Example of use of DoCO #1. figshare. https://doi.org/10.6084/m9.figshare.1513725 @@ -132,6 +132,6 @@ Journal Articles. In Proceedings of the International Symposium on XML for the Long Haul: Issues in the Long-term Preservation of XML. - OA at http://dx.doi.org/10.4242/BalisageVol6.Beck01." . + OA at https://doi.org/10.4242/BalisageVol6.Beck01." . -#cite Peroni, Silvio (2015): Example of use of DoCO #2. figshare. http://dx.doi.org/10.6084/m9.figshare.1513733 +#cite Peroni, Silvio (2015): Example of use of DoCO #2. figshare. https://doi.org/10.6084/m9.figshare.1513733 diff --git a/spar/ontology_examples/fabio.txt b/spar/ontology_examples/fabio.txt index 1dd3a32..c68474e 100644 --- a/spar/ontology_examples/fabio.txt +++ b/spar/ontology_examples/fabio.txt @@ -109,7 +109,7 @@ By using FaBiO entities, which also include part of the . @prefix co: . @@ -185,7 +185,7 @@ Even if FaBiO does not handle author ordering directly, it is possible to use it foaf:givenName "Richard" ; foaf:familyName "Benjamins" . -#cite Peroni, Silvio (2015): Example of use of FaBiO #2. figshare. http://dx.doi.org/10.6084/m9.figshare.1512820 +#cite Peroni, Silvio (2015): Example of use of FaBiO #2. figshare. https://doi.org/10.6084/m9.figshare.1512820 #id fabio_3 @@ -243,4 +243,4 @@ facet:artificial-intelligence-incl-robotics a fabio:SubjectTerm ; skos:prefLabel "Artificial Intelligence (incl. Robotics)" ; skos:inScheme . -#cite Peroni, Silvio (2015): Example of use of FaBiO #3. figshare. http://dx.doi.org/10.6084/m9.figshare.1512821 +#cite Peroni, Silvio (2015): Example of use of FaBiO #3. figshare. https://doi.org/10.6084/m9.figshare.1512821 diff --git a/spar/ontology_examples/fivestars.txt b/spar/ontology_examples/fivestars.txt index d621fed..8f9822c 100644 --- a/spar/ontology_examples/fivestars.txt +++ b/spar/ontology_examples/fivestars.txt @@ -4,12 +4,12 @@ #description The [Five Stars of Online Journal Articles Ontology](/ontologies/fivestars) allows to encode ratings machine-readable form according to five different criteria, i.e., peer review, open access, enhanced content, available datasets, and machine-readable metadata. This example shows the Five Stars ratings for the following article (from which the example is extracted): -

    Shotton, D. (2012). The Five Stars of Online Journal Articles - a Framework for Article Evaluation. In D-Lib Magazine, 18 (1/2). http://dx.doi.org/10.1045/january2012-shotton

    +

    Shotton, D. (2012). The Five Stars of Online Journal Articles - a Framework for Article Evaluation. In D-Lib Magazine, 18 (1/2). https://doi.org/10.1045/january2012-shotton

    #code @prefix fivestars: . @prefix xsd: . - + fivestars:hasPeerReviewRating "3"^^xsd:nonNegativeInteger ; fivestars:peerReviewRatingComment @@ -41,4 +41,4 @@ than a research paper with primary research data, has influenced the overall rating obtained." . -#cite Peroni, Silvio (2015): Example of use of FiveStars #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1560007 +#cite Peroni, Silvio (2015): Example of use of FiveStars #1. figshare. https://doi.org/10.6084/m9.figshare.1560007 diff --git a/spar/ontology_examples/frapo.txt b/spar/ontology_examples/frapo.txt index a8b3ce7..78c48e2 100644 --- a/spar/ontology_examples/frapo.txt +++ b/spar/ontology_examples/frapo.txt @@ -4,7 +4,7 @@ #description The specification of the connection between a research paper, the investigation done and discussed in it and the funds that allowed such investigation are important aspects to describe in the paper itself. Usually, such aspects are introduced in a footnote or, even better, in an appropriate acknowledgement section that describe them in natural language. -The use of [FRAPO](/ontologies/frapo) in combination with other SPAR Ontologies such as [FaBiO](/ontologies/fabio) and [SCoRO](/ontologies/scoro) permits the description of the aforementioned aspects in RDF. For instance, the well-known paper published by a young Peter Mika and entitled "[Ontologies are us: a unified model of social networks and semantics](http://dx.doi.org/10.1016/j.websem.2006.11.002)" has been one of the outcomes of Mika's investigation founded by his Ph.D. scholarship. [FRAPO](/ontologies/frapo) allows one to explicitly describe all of this by means of its several classes and properties. +The use of [FRAPO](/ontologies/frapo) in combination with other SPAR Ontologies such as [FaBiO](/ontologies/fabio) and [SCoRO](/ontologies/scoro) permits the description of the aforementioned aspects in RDF. For instance, the well-known paper published by a young Peter Mika and entitled "[Ontologies are us: a unified model of social networks and semantics](https://doi.org/10.1016/j.websem.2006.11.002)" has been one of the outcomes of Mika's investigation founded by his Ph.D. scholarship. [FRAPO](/ontologies/frapo) allows one to explicitly describe all of this by means of its several classes and properties. #code @prefix : . @prefix fabio: . @@ -21,7 +21,7 @@ org:vrije-universiteit-amsterdam a frapo:University ; :investigation a frapo:Investigation ; frapo:hasOutput - . + . :phd-scholarship-2004 a frapo:Scholarship ; foaf:name "Ph.D. Scholarship 2004" ; @@ -38,18 +38,18 @@ person:peter-mika a foaf:Person ; scoro:withContribution scoro:writes-manuscript-draft ; scoro:withContributionEffort scoro:solo-effort ; scoro:relatesToEntity - . + . :mika-revises-manuscript a scoro:ContributionSituation ; scoro:withContribution scoro:revises-manuscript ; scoro:withContributionEffort scoro:solo-effort ; scoro:relatesToEntity - . + . :affiliation-vua a pro:RoleInTime ; pro:withRole scoro:affiliate ; pro:relatesToOrganization org:vrije-universiteit-amsterdam ; pro:relatesToDocument - . + . -#cite Peroni, Silvio (2015): Example of use of FRAPO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1549721 +#cite Peroni, Silvio (2015): Example of use of FRAPO #1. figshare. https://doi.org/10.6084/m9.figshare.1549721 diff --git a/spar/ontology_examples/frbr.txt b/spar/ontology_examples/frbr.txt index 94babfb..8b18681 100644 --- a/spar/ontology_examples/frbr.txt +++ b/spar/ontology_examples/frbr.txt @@ -104,4 +104,4 @@ Although it is possible to use FRBR (in combination with [DC Terms](http://dubli :springer a frbr:CorporateBody ; dcterms:description "Springer" . -#cite Peroni, Silvio (2015): Example of use of FRBR DL #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1540739 +#cite Peroni, Silvio (2015): Example of use of FRBR DL #1. figshare. https://doi.org/10.6084/m9.figshare.1540739 diff --git a/spar/ontology_examples/pro.txt b/spar/ontology_examples/pro.txt index b3262c3..ee9f2c2 100644 --- a/spar/ontology_examples/pro.txt +++ b/spar/ontology_examples/pro.txt @@ -25,13 +25,13 @@ In order to address this issue, [PRO](/ontologies/pro) provides a convenient way :silvio-peroni-author a pro:RoleInTime ; pro:withRole pro:author ; pro:relatesToDocument - , - . + , + . :silvio-peroni-at-unibo a pro:RoleInTime ; pro:withRole scoro:affiliate ; pro:relatesToDocument - ; + ; pro:relatesToOrganization dogfood:university-of-bologna ; tvc:atTime :unibo-affiliation-time . @@ -43,7 +43,7 @@ In order to address this issue, [PRO](/ontologies/pro) provides a convenient way :silvio-peroni-at-kmi a pro:RoleInTime ; pro:withRole scoro:affiliate ; pro:relatesToDocument - ; + ; pro:relatesToOrganization dogfood:kmi-the-open-university-uk ; tvc:atTime :kmi-affiliation-time . @@ -54,4 +54,4 @@ In order to address this issue, [PRO](/ontologies/pro) provides a convenient way ti:hasIntervalEndDate "2008-09-30T23:59:59Z"^^xsd:dateTime . -#cite Peroni, Silvio (2015): Example of use of PRO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1538655 +#cite Peroni, Silvio (2015): Example of use of PRO #1. figshare. https://doi.org/10.6084/m9.figshare.1538655 diff --git a/spar/ontology_examples/pso.txt b/spar/ontology_examples/pso.txt index 12f95ea..dd70d82 100644 --- a/spar/ontology_examples/pso.txt +++ b/spar/ontology_examples/pso.txt @@ -4,7 +4,7 @@ #description Using PSO, it is possible to describe the statuses of a document and how they change over time. For instance, consider the following description: -> The paper entitled "[Annotations with EARMARK for arbitrary, overlapping and out-of order markup](http://dx.doi.org/10.1145/1600193.1600232)" was submitted to [DocEng 2009](http://www.documentengineering.org/) on 24 April 2009 at 13:18. At noon on 26 April, when the authors received acknowledgement of safe receipt of the paper from the conference editorial committee, the paper was considered "under review" until 27 May at 17:38. +> The paper entitled "[Annotations with EARMARK for arbitrary, overlapping and out-of order markup](https://doi.org/10.1145/1600193.1600232)" was submitted to [DocEng 2009](http://www.documentengineering.org/) on 24 April 2009 at 13:18. At noon on 26 April, when the authors received acknowledgement of safe receipt of the paper from the conference editorial committee, the paper was considered "under review" until 27 May at 17:38. In this example there are at least two different status assigned to the document. A permanent status, i.e., "submitted", that started on 24 April 2009 at 13:18 and that holds forever (unless a withdrawn is requested), and a temporary status, i.e. "under review", that started at noon on 26 April and finished on 27 May at 17:38. @@ -16,7 +16,7 @@ In this example there are at least two different status assigned to the document @prefix tvc: . @prefix xsd: . - + pso:holdsStatusInTime :submitted-to-doceng , :under-revision-by-doceng-pc . @@ -59,4 +59,4 @@ In this example there are at least two different status assigned to the document "The reviewers completed their reviews of the paper." . -#cite Peroni, Silvio (2015): Example of use of PSO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1536426 +#cite Peroni, Silvio (2015): Example of use of PSO #1. figshare. https://doi.org/10.6084/m9.figshare.1536426 diff --git a/spar/ontology_examples/pwo.txt b/spar/ontology_examples/pwo.txt index d0b23c1..5d22b1f 100644 --- a/spar/ontology_examples/pwo.txt +++ b/spar/ontology_examples/pwo.txt @@ -250,4 +250,4 @@ The whole publishing workflow we have just described can be formally represented ti:hasIntervalStartDate "2013-06-10T17:47:53"^^xsd:dateTime . -#cite Peroni, Silvio (2015): Example of use of PWO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1540728 +#cite Peroni, Silvio (2015): Example of use of PWO #1. figshare. https://doi.org/10.6084/m9.figshare.1540728 diff --git a/spar/ontology_examples/scoro.txt b/spar/ontology_examples/scoro.txt index e560679..06af3ef 100644 --- a/spar/ontology_examples/scoro.txt +++ b/spar/ontology_examples/scoro.txt @@ -4,7 +4,7 @@ #description Providing a description of how a certain research is described in a published paper, highlighting the various roles of the people who were involved and indicating explicitly their contribution, is crucial in research communications. Here we show how to provide an RDF description of all these information related to a particular article, i.e., "[Adventures in semantic publishing: exemplar semantic enhancement of -a research article](http://dx.doi.org/10.1371/journal.pcbi.1000361)", by means of [SCoRO](/ontologies/scoro). While SCoRO is used for describing person's roles and contributions, in the example it is used in combination with [FaBiO](/ontologies/fabio), that provides structured vocabulary terms to characterize scholarly publications, and with [FRAPO](/ontologies/frapo), that provides structured vocabulary terms to describe research administration, research funding, and the projects and investigations that such funding supports. +a research article](https://doi.org/10.1371/journal.pcbi.1000361)", by means of [SCoRO](/ontologies/scoro). While SCoRO is used for describing person's roles and contributions, in the example it is used in combination with [FaBiO](/ontologies/fabio), that provides structured vocabulary terms to characterize scholarly publications, and with [FRAPO](/ontologies/frapo), that provides structured vocabulary terms to describe research administration, research funding, and the projects and investigations that such funding supports. #code @prefix : . @prefix dcterms: . @@ -21,9 +21,9 @@ a research article](http://dx.doi.org/10.1371/journal.pcbi.1000361)", by means o :shotton-et-al-investigation a frapo:Investigation ; dcterms:title "Experiments in Semantic Publishing" ; frapo:hasOutput - . + . - + a fabio:JournalArticle ; dcterms:bibliographicCitation "Shotton D, Portwin K, Klyne G, Miles A (2009). Adventures @@ -45,7 +45,7 @@ a research article](http://dx.doi.org/10.1371/journal.pcbi.1000361)", by means o pro:author , scoro:senior-author ; pro:relatesToDocument - . + . :shotton-pi a pro:RoleInTime ; pro:withRole scoro:principal-investigator ; @@ -63,7 +63,7 @@ a research article](http://dx.doi.org/10.1371/journal.pcbi.1000361)", by means o # ... -#cite Peroni, Silvio (2015): Example of use of SCoRO #1. figshare. http://dx.doi.org/10.6084/m9.figshare.1543378 +#cite Peroni, Silvio (2015): Example of use of SCoRO #1. figshare. https://doi.org/10.6084/m9.figshare.1543378 #id scoro_2 @@ -89,7 +89,7 @@ a research article](http://dx.doi.org/10.1371/journal.pcbi.1000361)", by means o :sp-principal-author
 a pro:RoleInTime ; pro:withRole scoro:principal-author ; pro:relatesToDocument - . + . :david-shotton a foaf:Person ; foaf:givenName "David" ; @@ -99,14 +99,14 @@ a research article](http://dx.doi.org/10.1371/journal.pcbi.1000361)", by means o :ds-principal-author
 a pro:RoleInTime ; pro:withRole scoro:principal-author ; pro:relatesToDocument - ; + ; scoro:isEqualToRoleInTime :sp-principal-author . - + a fabio:JournalArticle ; dcterms:title "FaBiO and CiTO: ontologies for describing bibliographic resources and citations" ; dcterms:creator :silvio-peroni , :david-shotton . -#cite Peroni, Silvio (2015): Example of use of SCoRO #2. figshare. http://dx.doi.org/10.6084/m9.figshare.1549669 +#cite Peroni, Silvio (2015): Example of use of SCoRO #2. figshare. https://doi.org/10.6084/m9.figshare.1549669