From 21c71ffc37b38f59ae2d4732677e21c48c6f2a60 Mon Sep 17 00:00:00 2001
From: Liripo <54770415+Liripo@users.noreply.github.com>
Date: Tue, 28 Oct 2025 18:03:05 +0800
Subject: [PATCH] anndata.X.value

adata.X.value don't support
---
 src/pyscenic/cli/utils.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/pyscenic/cli/utils.py b/src/pyscenic/cli/utils.py
index 95f98e5..d17403b 100644
--- a/src/pyscenic/cli/utils.py
+++ b/src/pyscenic/cli/utils.py
@@ -140,7 +140,7 @@ def load_exp_matrix(
             adata = read_h5ad(filename=fname, backed="r")
             if return_sparse:
                 # expr, gene, cell:
-                return adata.X.value, adata.var_names.values, adata.obs_names.values
+                return adata.X.to_memory(), adata.var_names.values, adata.obs_names.values
             else:
                 return pd.DataFrame(
                     adata.X.value.todense(),