Merge branch 'release/v3.5.1'

Author: aportelli

Readme.md

@@ -71,6 +71,9 @@ make install
 where `<prefix>` should be replaced by the desired prefix for LatAnalyze installation, and `<n>` is the number of parallel build processes (typically twice your number of cores).
 
 ## History
+#### v3.5.1
+Various fixes and cleaning of outdated code.
+
 #### v3.5
 Additions:
 * 'Impulse' & line type plots

bootstrap.sh

@@ -2,5 +2,5 @@
 
 rm -rf .buildutils
 mkdir -p .buildutils/m4
-./update_eigen.sh eigen-3.3.7.tar.bz2
+./update_eigen.sh eigen-3.3.8.tar.bz2
 autoreconf -fvi

ci-scripts/install-gsl.sh

@@ -9,8 +9,11 @@ fi
 PREFIX=$1
 
 set -ex
-INITDIR=`pwd`
-cd local/build
+INITDIR=$(pwd -P)
+mkdir -p ${PREFIX}
+cd ${PREFIX}
+PREFIX=$(pwd -P)
+cd ${INITDIR}/local/build
 wget http://ftpmirror.gnu.org/gsl/${NAME}.tar.gz
 tar -xzvf ${NAME}.tar.gz
 mkdir -p ${NAME}/build

ci-scripts/install-hdf5.sh

@@ -9,8 +9,11 @@ fi
 PREFIX=$1
 
 set -ex
-INITDIR=`pwd`
-cd local/build
+INITDIR=$(pwd -P)
+mkdir -p ${PREFIX}
+cd ${PREFIX}
+PREFIX=$(pwd -P)
+cd ${INITDIR}/local/build
 wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/${NAME}/src/${NAME}.tar.gz
 tar -xzvf ${NAME}.tar.gz
 mkdir ${NAME}/build

ci-scripts/install-latan.sh

@@ -5,14 +5,18 @@ if (( $# != 1 )); then
   exit 1
 fi
 PREFIX=$1
-OS=$2
 
 set -ex
+INITDIR=$(pwd -P)
+mkdir -p ${PREFIX}
+cd ${PREFIX}
+PREFIX=$(pwd -P)
+cd ${INITDIR}
 ./install-deps.sh ${PREFIX}
 cd ..
 ./bootstrap.sh
 mkdir -p build
 cd build
-../configure --prefix=$PREFIX --with-minuit=$PREFIX --with-nlopt=$PREFIX --with-latcore=$PREFIX --with-hdf5=$PREFIX --with-gsl=$PREFIX CXXFLAGS="${CXXFLAGS} -O3 -march=native -mtune=native"
+../configure --prefix=${PREFIX} --with-minuit=${PREFIX} --with-nlopt=${PREFIX} --with-hdf5=${PREFIX} --with-gsl=${PREFIX} CXXFLAGS="${CXXFLAGS} -O3 -march=haswell -mtune=haswell"
 make -j4
 make install

ci-scripts/install-minuit.sh

@@ -9,8 +9,11 @@ fi
 PREFIX=$1
 
 set -ex
-INITDIR=`pwd`
-cd local/build
+INITDIR=$(pwd -P)
+mkdir -p ${PREFIX}
+cd ${PREFIX}
+PREFIX=$(pwd -P)
+cd ${INITDIR}/local/build
 wget http://www.cern.ch/mathlibs/sw/5_34_14/Minuit2/${NAME}.tar.gz
 tar -xzvf ${NAME}.tar.gz
 mkdir -p ${NAME}/build

ci-scripts/install-nlopt.sh

@@ -9,14 +9,17 @@ fi
 PREFIX=$1
 
 set -ex
-INITDIR=`pwd`
-cd local/build
+INITDIR=$(pwd -P)
+mkdir -p ${PREFIX}
+cd ${PREFIX}
+PREFIX=$(pwd -P)
+cd ${INITDIR}/local/build
 wget https://github.com/stevengj/nlopt/archive/v${NAME}.tar.gz
 tar -xzvf v${NAME}.tar.gz
 NAME=nlopt-${NAME}
 mkdir -p ${NAME}/build
 cd ${NAME}/build
-cmake -DCMAKE_INSTALL_PREFIX=${PREFIX} ..
+cmake -DCMAKE_INSTALL_PREFIX=${PREFIX} -DCMAKE_BUILD_WITH_INSTALL_NAME_DIR=TRUE -DCMAKE_INSTALL_NAME_DIR="${PREFIX}/lib" ..
 make -j4 
 make install
 cd ${INITDIR}/local

configure.ac

@@ -2,7 +2,7 @@
 
 # Initialization
 AC_PREREQ([2.63])
-AC_INIT([LatAnalyze],[3.5],[[email protected]],[LatAnalyze])
+AC_INIT([LatAnalyze],[3.5.1],[[email protected]],[LatAnalyze])
 AC_CONFIG_AUX_DIR([.buildutils])
 AC_CONFIG_SRCDIR([lib/Global.cpp])
 AC_CONFIG_SRCDIR([utils/sample_read.cpp])