From b78ae56d27405ec4087a1febd28afc024aec26dd Mon Sep 17 00:00:00 2001 From: vsoch Date: Mon, 8 May 2023 18:25:52 -0600 Subject: [PATCH 1/3] start of work to add jobset Signed-off-by: vsoch --- Dockerfile | 2 +- controllers/flux/job.go | 7 +- controllers/flux/jobset.go | 137 +++ controllers/flux/minicluster.go | 117 ++- controllers/flux/suite_test.go | 16 +- controllers/flux/templates.go | 31 +- controllers/flux/templates/broker.sh | 69 ++ controllers/flux/templates/cert-generate.sh | 22 - .../flux/templates/{wait.sh => components.sh} | 96 +- controllers/flux/templates/worker.sh | 30 + controllers/flux/volumes.go | 9 +- docs/tutorials/index.md | 4 + docs/tutorials/jobset.md | 33 + .../tests/hello-world/00-hello-world.yaml | 6 - examples/tests/hello-world/minicluster.yaml | 2 +- examples/tests/jobset/minicluster.yaml | 19 + go.mod | 104 +- go.sum | 908 +++--------------- 18 files changed, 573 insertions(+), 1039 deletions(-) create mode 100644 controllers/flux/jobset.go create mode 100644 controllers/flux/templates/broker.sh delete mode 100644 controllers/flux/templates/cert-generate.sh rename controllers/flux/templates/{wait.sh => components.sh} (67%) create mode 100644 controllers/flux/templates/worker.sh create mode 100644 docs/tutorials/jobset.md delete mode 100644 examples/tests/hello-world/00-hello-world.yaml create mode 100644 examples/tests/jobset/minicluster.yaml diff --git a/Dockerfile b/Dockerfile index 0db2d4ec..5f7409e6 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,5 +1,5 @@ # Build the manager binary -FROM golang:1.18 as builder +FROM golang:1.20 as builder WORKDIR /workspace diff --git a/controllers/flux/job.go b/controllers/flux/job.go index f5e9a2be..2e952f45 100644 --- a/controllers/flux/job.go +++ b/controllers/flux/job.go @@ -56,9 +56,10 @@ func (r *MiniClusterReconciler) newMiniClusterJob( }, Spec: corev1.PodSpec{ // matches the service - Subdomain: restfulServiceName, - SetHostnameAsFQDN: &setAsFQDN, - Volumes: getVolumes(cluster), + Subdomain: restfulServiceName, + SetHostnameAsFQDN: &setAsFQDN, + // Not currently in use, commented out for now + //Volumes: getVolumes(cluster), RestartPolicy: corev1.RestartPolicyOnFailure, ImagePullSecrets: getImagePullSecrets(cluster), ServiceAccountName: cluster.Spec.Pod.ServiceAccountName, diff --git a/controllers/flux/jobset.go b/controllers/flux/jobset.go new file mode 100644 index 00000000..2bdfd6df --- /dev/null +++ b/controllers/flux/jobset.go @@ -0,0 +1,137 @@ +/* +Copyright 2023 Lawrence Livermore National Security, LLC + (c.f. AUTHORS, NOTICE.LLNS, COPYING) + +This is part of the Flux resource manager framework. +For details, see https://github.com/flux-framework. + +SPDX-License-Identifier: Apache-2.0 +*/ + +package controllers + +import ( + batchv1 "k8s.io/api/batch/v1" + corev1 "k8s.io/api/core/v1" + metav1 "k8s.io/apimachinery/pkg/apis/meta/v1" + + api "flux-framework/flux-operator/api/v1alpha1" + + jobset "sigs.k8s.io/jobset/api/v1alpha1" +) + +func (r *MiniClusterReconciler) newJobSet( + cluster *api.MiniCluster, +) (*jobset.JobSet, error) { + + suspend := true + jobs := jobset.JobSet{ + ObjectMeta: metav1.ObjectMeta{ + Name: cluster.Name, + Namespace: cluster.Namespace, + Labels: cluster.Spec.JobLabels, + }, + Spec: jobset.JobSetSpec{ + + // Suspend child jobs (the worker pods) when broker finishes + Suspend: &suspend, + // TODO decide on FailurePolicy here + // default is to fail if all jobs in jobset fail + }, + } + + // Get leader broker job, the parent in the JobSet (worker or follower pods) + // cluster, size, entrypoint, indexed + leaderJob, err := r.getJob(cluster, 1, "broker", false) + if err != nil { + return &jobs, err + } + workerJob, err := r.getJob(cluster, cluster.Spec.Size-1, "worker", true) + if err != nil { + return &jobs, err + } + jobs.Spec.ReplicatedJobs = []jobset.ReplicatedJob{leaderJob, workerJob} + return &jobs, nil +} + +// getBrokerJob creates the job for the main leader broker +func (r *MiniClusterReconciler) getJob( + cluster *api.MiniCluster, + size int32, + entrypoint string, + indexed bool, +) (jobset.ReplicatedJob, error) { + + backoffLimit := int32(100) + podLabels := r.getPodLabels(cluster) + enableDNSHostnames := true + completionMode := batchv1.NonIndexedCompletion + + if indexed { + completionMode = batchv1.IndexedCompletion + } + + // TODO how are these named + job := jobset.ReplicatedJob{ + Name: cluster.Name + "-" + entrypoint, + + // Allow pods to be reached by their hostnames! A simple boolean! Chef's kiss! + // ---.- + Network: &jobset.Network{ + EnableDNSHostnames: &enableDNSHostnames, + }, + + Template: batchv1.JobTemplateSpec{ + ObjectMeta: metav1.ObjectMeta{ + Name: cluster.Name, + Namespace: cluster.Namespace, + Labels: cluster.Spec.JobLabels, + }, + }, + // This is the default, but let's be explicit + Replicas: 1, + } + + // Create the JobSpec for the job -> Template -> Spec + jobspec := batchv1.JobSpec{ + BackoffLimit: &backoffLimit, + Completions: &size, + Parallelism: &size, + CompletionMode: &completionMode, + ActiveDeadlineSeconds: &cluster.Spec.DeadlineSeconds, + + // Note there is parameter to limit runtime + Template: corev1.PodTemplateSpec{ + ObjectMeta: metav1.ObjectMeta{ + Name: cluster.Name, + Namespace: cluster.Namespace, + Labels: podLabels, + Annotations: cluster.Spec.Pod.Annotations, + }, + Spec: corev1.PodSpec{ + // matches the service + // Subdomain: restfulServiceName, + Volumes: getVolumes(cluster, entrypoint), + RestartPolicy: corev1.RestartPolicyOnFailure, + ImagePullSecrets: getImagePullSecrets(cluster), + ServiceAccountName: cluster.Spec.Pod.ServiceAccountName, + NodeSelector: cluster.Spec.Pod.NodeSelector, + }, + }, + } + // Get resources for the pod + resources, err := r.getPodResources(cluster) + r.log.Info("šŸŒ€ MiniCluster", "Pod.Resources", resources) + if err != nil { + r.log.Info("šŸŒ€ MiniCluster", "Pod.Resources", resources) + return job, err + } + jobspec.Template.Spec.Overhead = resources + + // Get volume mounts, add on container specific ones + mounts := getVolumeMounts(cluster) + containers, err := r.getContainers(cluster.Spec.Containers, cluster.Name, mounts) + jobspec.Template.Spec.Containers = containers + job.Template.Spec = jobspec + return job, err +} diff --git a/controllers/flux/minicluster.go b/controllers/flux/minicluster.go index 672088fa..78a26f9e 100644 --- a/controllers/flux/minicluster.go +++ b/controllers/flux/minicluster.go @@ -15,16 +15,15 @@ import ( "context" "fmt" "strings" - "text/template" jobctrl "flux-framework/flux-operator/pkg/job" "github.com/google/uuid" - batchv1 "k8s.io/api/batch/v1" corev1 "k8s.io/api/core/v1" metav1 "k8s.io/apimachinery/pkg/apis/meta/v1" ctrl "sigs.k8s.io/controller-runtime" "sigs.k8s.io/controller-runtime/pkg/client" + jobset "sigs.k8s.io/jobset/api/v1alpha1" "k8s.io/apimachinery/pkg/api/errors" "k8s.io/apimachinery/pkg/types" @@ -47,6 +46,9 @@ func (r *MiniClusterReconciler) ensureMiniCluster( cluster *api.MiniCluster, ) (ctrl.Result, error) { + // Setup users for the cluster, if necessary + r.clusterAccounts(cluster) + // Ensure the configs are created (for volume sources) _, result, err := r.getConfigMap(ctx, cluster, "flux-config", cluster.Name+fluxConfigSuffix) if err != nil { @@ -87,11 +89,13 @@ func (r *MiniClusterReconciler) ensureMiniCluster( } // Create headless service for the MiniCluster - selector := map[string]string{"job-name": cluster.Name} - result, err = r.exposeServices(ctx, cluster, restfulServiceName, selector) - if err != nil { - return result, err - } + // We should not technically need this anymore. + // TODO I need to test the cluster, but I can't get the JobSet working + //selector := map[string]string{"job-name": cluster.Name} + //result, err = r.exposeServices(ctx, cluster, restfulServiceName, selector) + //if err != nil { + // return result, err + //} // Create the batch job that brings it all together! // A batchv1.Job can hold a spec for containers that use the configs we just made @@ -101,8 +105,10 @@ func (r *MiniClusterReconciler) ensureMiniCluster( } // If the sizes are different, we patch to update. - if *mc.Spec.Parallelism != cluster.Spec.Size { - r.log.Info("MiniCluster", "Size", mc.Spec.Parallelism, "Requested Size", cluster.Spec.Size) + // The second index (1) is always the worker spec, add 1 for the leader + currentSize := *mc.Spec.ReplicatedJobs[1].Template.Spec.Parallelism + 1 + if currentSize != cluster.Spec.Size { + r.log.Info("MiniCluster", "Size", currentSize, "Requested Size", cluster.Spec.Size) result, err := r.resizeCluster(ctx, mc, cluster) if err != nil { return result, err @@ -137,6 +143,27 @@ func (r *MiniClusterReconciler) ensureMiniCluster( return ctrl.Result{Requeue: true}, nil } +// clusterAccounts sets up the secret key / user passwords if needed +func (r *MiniClusterReconciler) clusterAccounts(cluster *api.MiniCluster) { + + // Ensure our requested users each each have a password + for i, user := range cluster.Spec.Users { + if cluster.Spec.Users[i].Password == "" { + cluster.Spec.Users[i].Password = getRandomToken(user.Password) + } + + // Passwords will be truncated to 8 + if len(cluster.Spec.Users[i].Password) > 8 { + cluster.Spec.Users[i].Password = cluster.Spec.Users[i].Password[:8] + } + } + + // Ensure Flux Restful has a secret key + if cluster.Spec.FluxRestful.SecretKey == "" { + cluster.Spec.FluxRestful.SecretKey = getRandomToken(cluster.Spec.FluxRestful.SecretKey) + } +} + // cleanupPodsStorage looks for the existing job, and cleans up if completed func (r *MiniClusterReconciler) cleanupPodsStorage( ctx context.Context, @@ -199,9 +226,9 @@ func (r *MiniClusterReconciler) cleanupPodsStorage( func (r *MiniClusterReconciler) getExistingJob( ctx context.Context, cluster *api.MiniCluster, -) (*batchv1.Job, error) { +) (*jobset.JobSet, error) { - existing := &batchv1.Job{} + existing := &jobset.JobSet{} err := r.Client.Get( ctx, types.NamespacedName{ @@ -216,16 +243,22 @@ func (r *MiniClusterReconciler) getExistingJob( // resizeCluster will patch the cluster to make a larger (or smaller) size func (r *MiniClusterReconciler) resizeCluster( ctx context.Context, - job *batchv1.Job, + job *jobset.JobSet, cluster *api.MiniCluster, ) (ctrl.Result, error) { + // The Jobset is ONLY the workers, so it's the size of the + // cluster -1. We don't allow the user to delete the leader + workerSize := cluster.Spec.Size - 1 + currentSize := *job.Spec.ReplicatedJobs[1].Template.Spec.Parallelism + 1 + // We absolutely don't allow a size less than 1 + // This is the user asking to delete the entire cluster, so // If this happens, restore to current / original size if cluster.Spec.Size < 1 { r.log.Info("MiniCluster", "PatchSize", cluster.Spec.Size, "Status", "Denied") patch := client.MergeFrom(cluster.DeepCopy()) - cluster.Spec.Size = *job.Spec.Parallelism + cluster.Spec.Size = currentSize // Apply the patch to restore to the original size err := r.Client.Patch(ctx, cluster, patch) @@ -247,8 +280,8 @@ func (r *MiniClusterReconciler) resizeCluster( // If we get here, the size is smaller r.log.Info("MiniCluster", "PatchSize", cluster.Spec.Size, "Status", "Accepted") patch := client.MergeFrom(job.DeepCopy()) - job.Spec.Parallelism = &cluster.Spec.Size - job.Spec.Completions = &cluster.Spec.Size + job.Spec.ReplicatedJobs[1].Template.Spec.Parallelism = &workerSize + job.Spec.ReplicatedJobs[1].Template.Spec.Completions = &workerSize err := r.Client.Patch(ctx, job, patch) return ctrl.Result{Requeue: true}, err } @@ -257,7 +290,7 @@ func (r *MiniClusterReconciler) resizeCluster( func (r *MiniClusterReconciler) getMiniCluster( ctx context.Context, cluster *api.MiniCluster, -) (*batchv1.Job, ctrl.Result, error) { +) (*jobset.JobSet, ctrl.Result, error) { // Look for an existing job existing, err := r.getExistingJob(ctx, cluster) @@ -266,7 +299,7 @@ func (r *MiniClusterReconciler) getMiniCluster( if err != nil { if errors.IsNotFound(err) { - job, err := r.newMiniClusterJob(cluster) + job, err := r.newJobSet(cluster) if err != nil { r.log.Error( err, "Failed to create new MiniCluster Batch Job", @@ -353,16 +386,27 @@ func (r *MiniClusterReconciler) getConfigMap( } else if configName == "entrypoint" { // The main logic for generating the Curve certificate, start commands, is here - // We create a custom script for each container that warrants one, - // meaning a Flux Runner. + // We create custom scripts for each container that warrants one, + // meaning a Flux Runner. The custom scripts include both a broker (leader) + // and worker entrypoint for i, container := range cluster.Spec.Containers { if container.RunFlux { - waitScriptID := fmt.Sprintf("wait-%d", i) - waitScript, err := generateWaitScript(cluster, i) + + // Main broker script + scriptID := fmt.Sprintf("broker-%d", i) + script, err := generateStartScript(cluster, i, brokerStartTemplate) + if err != nil { + return existing, ctrl.Result{}, err + } + data[scriptID] = script + + // Worker config maps + scriptID = fmt.Sprintf("worker-%d", i) + script, err = generateStartScript(cluster, i, workerStartTemplate) if err != nil { return existing, ctrl.Result{}, err } - data[waitScriptID] = waitScript + data[scriptID] = script } } } @@ -436,8 +480,8 @@ func getRequiredRanks(cluster *api.MiniCluster) string { return generateRange(int(cluster.Spec.Size)) } -// generateWaitScript generates the main script to start everything up! -func generateWaitScript(cluster *api.MiniCluster, containerIndex int) (string, error) { +// generateStartScript generates a start script for a broker or a worker +func generateStartScript(cluster *api.MiniCluster, containerIndex int, startTemplate string) (string, error) { // The first pod (0) should always generate the curve certificate container := cluster.Spec.Containers[containerIndex] @@ -446,19 +490,6 @@ func generateWaitScript(cluster *api.MiniCluster, containerIndex int) (string, e // The resources size must also match the max size in the cluster hosts := generateHostlist(cluster, int(cluster.Spec.MaxSize)) - // Ensure our requested users each each have a password - for i, user := range cluster.Spec.Users { - cluster.Spec.Users[i].Password = getRandomToken(user.Password) - - // Passwords will be truncated to 8 - if len(cluster.Spec.Users[i].Password) > 8 { - cluster.Spec.Users[i].Password = cluster.Spec.Users[i].Password[:8] - } - } - - // Ensure Flux Restful has a secret key - cluster.Spec.FluxRestful.SecretKey = getRandomToken(cluster.Spec.FluxRestful.SecretKey) - // Only derive cores if > 1 var cores int32 if container.Cores > 1 { @@ -472,7 +503,7 @@ func generateWaitScript(cluster *api.MiniCluster, containerIndex int) (string, e requiredRanks := getRequiredRanks(cluster) // The token uuid is the same across images - wt := WaitTemplate{ + wt := StartTemplate{ FluxUser: getFluxUser(cluster.Spec.FluxRestful.Username), FluxToken: getRandomToken(cluster.Spec.FluxRestful.Token), MainHost: mainHost, @@ -483,13 +514,17 @@ func generateWaitScript(cluster *api.MiniCluster, containerIndex int) (string, e Batch: batchCommand, RequiredRanks: requiredRanks, } - t, err := template.New("wait-sh").Parse(waitToStartTemplate) + + // Wrap the named template to identify it later + startTemplate = `{{define "start"}}` + startTemplate + "{{end}}" + + // We assemble different strings (including the components) into one! + t, err := combineTemplates(startComponents, startTemplate) if err != nil { return "", err } - var output bytes.Buffer - if err := t.Execute(&output, wt); err != nil { + if err := t.ExecuteTemplate(&output, "start", wt); err != nil { return "", err } diff --git a/controllers/flux/suite_test.go b/controllers/flux/suite_test.go index 644ca70f..71ed3e0e 100644 --- a/controllers/flux/suite_test.go +++ b/controllers/flux/suite_test.go @@ -20,17 +20,17 @@ import ( "path/filepath" "testing" - . "github.com/onsi/ginkgo" + . "github.com/onsi/ginkgo/v2" . "github.com/onsi/gomega" + "k8s.io/client-go/kubernetes/scheme" "k8s.io/client-go/rest" "sigs.k8s.io/controller-runtime/pkg/client" "sigs.k8s.io/controller-runtime/pkg/envtest" - "sigs.k8s.io/controller-runtime/pkg/envtest/printer" logf "sigs.k8s.io/controller-runtime/pkg/log" "sigs.k8s.io/controller-runtime/pkg/log/zap" - mydomainv1alpha1 "flux-framework/flux-operator/api/v1alpha1" + cachev1alpha1 "flux-framework/flux-operator/api/v1alpha1" //+kubebuilder:scaffold:imports ) @@ -44,9 +44,7 @@ var testEnv *envtest.Environment func TestAPIs(t *testing.T) { RegisterFailHandler(Fail) - RunSpecsWithDefaultAndCustomReporters(t, - "Controller Suite", - []Reporter{printer.NewlineReporter{}}) + RunSpecs(t, "Controller Suite") } var _ = BeforeSuite(func() { @@ -54,7 +52,7 @@ var _ = BeforeSuite(func() { By("bootstrapping test environment") testEnv = &envtest.Environment{ - CRDDirectoryPaths: []string{filepath.Join("..", "..", "config", "crd", "bases")}, + CRDDirectoryPaths: []string{filepath.Join("..", "config", "crd", "bases")}, ErrorIfCRDPathMissing: true, } @@ -64,7 +62,7 @@ var _ = BeforeSuite(func() { Expect(err).NotTo(HaveOccurred()) Expect(cfg).NotTo(BeNil()) - err = mydomainv1alpha1.AddToScheme(scheme.Scheme) + err = cachev1alpha1.AddToScheme(scheme.Scheme) Expect(err).NotTo(HaveOccurred()) //+kubebuilder:scaffold:scheme @@ -73,7 +71,7 @@ var _ = BeforeSuite(func() { Expect(err).NotTo(HaveOccurred()) Expect(k8sClient).NotTo(BeNil()) -}, 60) +}) var _ = AfterSuite(func() { By("tearing down the test environment") diff --git a/controllers/flux/templates.go b/controllers/flux/templates.go index 82672abb..78e94059 100644 --- a/controllers/flux/templates.go +++ b/controllers/flux/templates.go @@ -12,6 +12,8 @@ package controllers import ( api "flux-framework/flux-operator/api/v1alpha1" + "fmt" + "text/template" _ "embed" ) @@ -22,17 +24,20 @@ var brokerConfigTemplate string //go:embed templates/job-manager.toml var brokerConfigJobManagerPlugin string +//go:embed templates/components.sh +var startComponents string + //go:embed templates/archive.toml var brokerArchiveSection string -//go:embed templates/wait.sh -var waitToStartTemplate string +//go:embed templates/broker.sh +var brokerStartTemplate string -//go:embed templates/cert-generate.sh -var generateCertTemplate string +//go:embed templates/worker.sh +var workerStartTemplate string -// WaitTemplate populates wait.sh -type WaitTemplate struct { +// StartTemplate populates broker.sh or worker.sh +type StartTemplate struct { FluxToken string // Token to log into the UI, should be consistent across containers FluxUser string // Username for Flux Restful API MainHost string // Main host identifier @@ -49,7 +54,15 @@ type WaitTemplate struct { Batch []string } -// CertTemplate populates cert-generate.sh -type CertTemplate struct { - PreCommand string +// combineTemplates into one "start" +func combineTemplates(listing ...string) (t *template.Template, err error) { + t = template.New("start") + + for i, templ := range listing { + _, err = t.New(fmt.Sprint("_", i)).Parse(templ) + if err != nil { + return t, err + } + } + return t, nil } diff --git a/controllers/flux/templates/broker.sh b/controllers/flux/templates/broker.sh new file mode 100644 index 00000000..149668b4 --- /dev/null +++ b/controllers/flux/templates/broker.sh @@ -0,0 +1,69 @@ +#!/bin/sh + +# This script handles start logic for the broker +{{template "init" .}} + +# Are we running diagnostics or the start command? +if [ "${diagnostics}" == "true" ]; then + run_diagnostics +else + + # Start flux with the original entrypoint + # If it's a batch job, we write the script for the broker to run + {{ if .Container.Batch }}rm -rf flux-job.batch + echo "#!/bin/bash +{{ if .Container.BatchRaw }}{{range $index, $line := .Batch}}{{ if $line }}{{$line}}{{ end }} +{{ end }} +{{ else }}{{range $index, $line := .Batch}}{{ if $line }}flux submit --flags waitable --error=${FLUX_OUTPUT_DIR}/job-{{$index}}.err --output=${FLUX_OUTPUT_DIR}/job-{{$index}}.out {{$line}}{{ end }} +{{ end }} +flux queue idle +flux jobs -a{{ end }} +" >> flux-job.batch + chmod +x flux-job.batch + {{ if not .Container.Commands.RunFluxAsRoot }}chown -R ${fluxuid} flux-job.batch{{ end }} + {{ end }} # end if container batch + + # Commands only run by the broker + {{ .Container.Commands.BrokerPre}} {{ if .Spec.Logging.Quiet }}> /dev/null 2>&1{{ end }} + + # No command - use default to start server +{{ if not .Spec.Logging.Quiet }} echo "Extra command arguments are: $@"{{ end }} + if [ "$@" == "" ]; then + + # An interactive job also doesn't require a command + {{ if .Spec.Interactive }}run_interactive_cluster + {{ else }}run_flux_restful{{ end }} + + # Case 2: Fall back to provided command + else + + # If we are running a batch job, no launcher mode + {{ if .Container.Batch }} + {{ if not .Spec.Logging.Quiet }}printf "āœØļø Prepared Batch Job:\n" + cat flux-job.batch + {{ end }} + + flags="{{ if ge .Spec.Tasks .Spec.Size }} -N {{.Spec.Size}}{{ end }} -n {{.Spec.Tasks}} {{ if .Spec.Flux.OptionFlags }}{{ .Spec.Flux.OptionFlags}}{{ end }} {{ if .Spec.Logging.Debug }} -vvv{{ end }}" + {{ if not .Spec.Logging.Quiet }} + printf "\nšŸŒ€ Batch Mode: flux start -o --config /etc/flux/config ${brokerOptions} {{.Container.Commands.Prefix}} sh -c 'flux batch ${flags} --flags waitable ./flux-job.batch && flux job wait --all'\n" + {{ end }} + {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxstart wall time %E" {{ end }}${asFlux} flux start -o --config /etc/flux/config ${brokerOptions} {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxsubmit wall time %E" {{ end }} {{.Container.Commands.Prefix}} sh -c "flux batch ${flags} --flags waitable ./flux-job.batch && flux job wait --all" {{ if .Spec.Logging.Quiet }}> /dev/null 2>&1{{ end }} + + {{ else }} # else for if container.batch + {{ if not .Spec.Logging.Quiet }} # if tasks >= size + # Container launchers are snakemake, nextflow, that will launch their own jobs + {{ if .Container.Launcher }} + printf "\nšŸŒ€ Launcher Mode: flux start -o --config /etc/flux/config ${brokerOptions} {{.Container.Commands.Prefix}} $@\n" + {{ else }} + printf "\nšŸŒ€ Submit Mode: flux start -o --config /etc/flux/config ${brokerOptions} {{.Container.Commands.Prefix}} flux submit {{ if ge .Spec.Tasks .Spec.Size }} -N {{.Spec.Size}}{{ end }} -n {{.Spec.Tasks}} --quiet {{ if .Spec.Flux.OptionFlags }}{{ .Spec.Flux.OptionFlags}}{{ end }} --watch{{ if .Spec.Logging.Debug }} -vvv{{ end }} $@\n" + {{ end }} +{{ end }} + {{ if .Container.Launcher }} + {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxstart wall time %E" {{ end }}${asFlux} flux start -o --config /etc/flux/config ${brokerOptions} {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxsubmit wall time %E" {{ end }} {{.Container.Commands.Prefix}} $@ + {{ else }} + {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxstart wall time %E" {{ end }}${asFlux} flux start -o --config /etc/flux/config ${brokerOptions} {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxsubmit wall time %E" {{ end }} {{.Container.Commands.Prefix}} flux submit {{ if ge .Spec.Tasks .Spec.Size }} -N {{.Spec.Size}}{{ end }} -n {{.Spec.Tasks}} --quiet {{ if .Spec.Flux.OptionFlags }}{{ .Spec.Flux.OptionFlags}}{{ end }} --watch{{ if .Spec.Logging.Debug }} -vvv{{ end }} $@ + {{ end }} # end if container.launcher + {{ end }} # end if container.batch + fi + {{ .Container.Commands.Post}} +fi \ No newline at end of file diff --git a/controllers/flux/templates/cert-generate.sh b/controllers/flux/templates/cert-generate.sh deleted file mode 100644 index f75f6673..00000000 --- a/controllers/flux/templates/cert-generate.sh +++ /dev/null @@ -1,22 +0,0 @@ -#!/bin/sh - -# This script exists just to generate and print the curve.cert for adding -# as a config map to the actual Flux MiniCluster - -# Always run flux commands (and the broker) as flux user -asFlux="sudo -u flux -E" - -# If any preCommand logic is defined -{{ .PreCommand}} - -# We currently require sudo and an ubuntu base -which sudo > /dev/null 2>&1 || (echo "sudo is required to be installed" && exit 1); -which flux > /dev/null 2>&1 || (echo "flux is required to be installed" && exit 1); - -# Add a flux user (required) -sudo adduser --disabled-password --uid 1000 --gecos "" flux > /dev/null 2>&1 || true - -# The entire purpose of this script is to generate the certificate and print to logs -mkdir -p /mnt/curve -flux keygen /mnt/curve/curve.cert -cat /mnt/curve/curve.cert diff --git a/controllers/flux/templates/wait.sh b/controllers/flux/templates/components.sh similarity index 67% rename from controllers/flux/templates/wait.sh rename to controllers/flux/templates/components.sh index e2a2ccae..900e4ed3 100644 --- a/controllers/flux/templates/wait.sh +++ b/controllers/flux/templates/components.sh @@ -1,9 +1,7 @@ #!/bin/sh -# This waiting script is run continuously and only updates -# hosts and runs the job (breaking from the while) when -# update_hosts.sh has been populated. This means the pod usually -# needs to be updated with the config map that has ips! +# Shared components for the broker and worker template +{{define "init"}} # If any initCommand logic is defined {{ .Container.Commands.Init}} {{ if .Spec.Logging.Quiet }}> /dev/null{{ end }} @@ -275,91 +273,5 @@ function run_interactive_cluster() { ${asFlux} {{.Container.Commands.Prefix}} flux broker --config-path /etc/flux/config ${brokerOptions} } -# Are we running diagnostics or the start command? -if [ "${diagnostics}" == "true" ]; then - run_diagnostics -else - - # Start flux with the original entrypoint - if [ $(hostname) == "${mainHost}" ]; then - - # If it's a batch job, we write the script for the broker to run - {{ if .Container.Batch }}rm -rf flux-job.batch - echo "#!/bin/bash -{{ if .Container.BatchRaw }}{{range $index, $line := .Batch}}{{ if $line }}{{$line}}{{ end }} -{{ end }} -{{ else }}{{range $index, $line := .Batch}}{{ if $line }}flux submit --flags waitable --error=${FLUX_OUTPUT_DIR}/job-{{$index}}.err --output=${FLUX_OUTPUT_DIR}/job-{{$index}}.out {{$line}}{{ end }} -{{ end }} -flux queue idle -flux jobs -a{{ end }} -" >> flux-job.batch - chmod +x flux-job.batch - {{ if not .Container.Commands.RunFluxAsRoot }}chown -R ${fluxuid} flux-job.batch{{ end }} - {{ end }} # end if container batch - - # Commands only run by the broker - {{ .Container.Commands.BrokerPre}} {{ if .Spec.Logging.Quiet }}> /dev/null 2>&1{{ end }} - - # No command - use default to start server -{{ if not .Spec.Logging.Quiet }} echo "Extra command arguments are: $@"{{ end }} - if [ "$@" == "" ]; then - - # An interactive job also doesn't require a command - {{ if .Spec.Interactive }}run_interactive_cluster - {{ else }}run_flux_restful{{ end }} - - # Case 2: Fall back to provided command - else - - # If we are running a batch job, no launcher mode - {{ if .Container.Batch }} - {{ if not .Spec.Logging.Quiet }}printf "āœØļø Prepared Batch Job:\n" - cat flux-job.batch - {{ end }} - - flags="{{ if ge .Spec.Tasks .Spec.Size }} -N {{.Spec.Size}}{{ end }} -n {{.Spec.Tasks}} {{ if .Spec.Flux.OptionFlags }}{{ .Spec.Flux.OptionFlags}}{{ end }} {{ if .Spec.Logging.Debug }} -vvv{{ end }}" - {{ if not .Spec.Logging.Quiet }} - printf "\nšŸŒ€ Batch Mode: flux start -o --config /etc/flux/config ${brokerOptions} {{.Container.Commands.Prefix}} sh -c 'flux batch ${flags} --flags waitable ./flux-job.batch && flux job wait --all'\n" - {{ end }} - {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxstart wall time %E" {{ end }}${asFlux} flux start -o --config /etc/flux/config ${brokerOptions} {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxsubmit wall time %E" {{ end }} {{.Container.Commands.Prefix}} sh -c "flux batch ${flags} --flags waitable ./flux-job.batch && flux job wait --all" {{ if .Spec.Logging.Quiet }}> /dev/null 2>&1{{ end }} - - {{ else }} # else for if container.batch - {{ if not .Spec.Logging.Quiet }} # if tasks >= size - # Container launchers are snakemake, nextflow, that will launch their own jobs - {{ if .Container.Launcher }} - printf "\nšŸŒ€ Launcher Mode: flux start -o --config /etc/flux/config ${brokerOptions} {{.Container.Commands.Prefix}} $@\n" - {{ else }} - printf "\nšŸŒ€ Submit Mode: flux start -o --config /etc/flux/config ${brokerOptions} {{.Container.Commands.Prefix}} flux submit {{ if ge .Spec.Tasks .Spec.Size }} -N {{.Spec.Size}}{{ end }} -n {{.Spec.Tasks}} --quiet {{ if .Spec.Flux.OptionFlags }}{{ .Spec.Flux.OptionFlags}}{{ end }} --watch{{ if .Spec.Logging.Debug }} -vvv{{ end }} $@\n" - {{ end }} -{{ end }} - {{ if .Container.Launcher }} - {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxstart wall time %E" {{ end }}${asFlux} flux start -o --config /etc/flux/config ${brokerOptions} {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxsubmit wall time %E" {{ end }} {{.Container.Commands.Prefix}} $@ - {{ else }} - {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxstart wall time %E" {{ end }}${asFlux} flux start -o --config /etc/flux/config ${brokerOptions} {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxsubmit wall time %E" {{ end }} {{.Container.Commands.Prefix}} flux submit {{ if ge .Spec.Tasks .Spec.Size }} -N {{.Spec.Size}}{{ end }} -n {{.Spec.Tasks}} --quiet {{ if .Spec.Flux.OptionFlags }}{{ .Spec.Flux.OptionFlags}}{{ end }} --watch{{ if .Spec.Logging.Debug }} -vvv{{ end }} $@ - {{ end }} # end if container.launcher - {{ end }} # end if container.batch - fi - else - - # Commands only run by the workers - {{ .Container.Commands.WorkerPre}} {{ if .Spec.Logging.Quiet }}> /dev/null 2>&1{{ end }} - - # Sleep until the broker is ready - {{ if not .Spec.Logging.Quiet }}printf "\nšŸŒ€ {{.Container.Commands.Prefix}} flux start -o --config /etc/flux/config ${brokerOptions}\n"{{ end }} - while true - do - {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxstart wall time %E" {{ end }}${asFlux} {{.Container.Commands.Prefix}} flux start -o --config /etc/flux/config ${brokerOptions} - retval=$? - {{ if not .Spec.Logging.Quiet }}printf "Return value for follower worker is ${retval}\n"{{ end }} - if [[ "${retval}" -eq 0 ]]; then - {{ if not .Spec.Logging.Quiet }}printf "The follower worker exited cleanly. Goodbye!\n"{{ end }} - break - fi - {{ if not .Spec.Logging.Quiet }}printf "\nšŸ˜Ŗ Sleeping 15s until broker is ready..."{{ end }} - sleep 15 - done - fi - - {{ .Container.Commands.Post}} -fi - +# End init logic +{{end}} \ No newline at end of file diff --git a/controllers/flux/templates/worker.sh b/controllers/flux/templates/worker.sh new file mode 100644 index 00000000..cce02e9e --- /dev/null +++ b/controllers/flux/templates/worker.sh @@ -0,0 +1,30 @@ +#!/bin/sh + +# The start script for a Flux cluster worker +{{template "init" .}} + +# Are we running diagnostics or the start command? +if [ "${diagnostics}" == "true" ]; then + run_diagnostics +else + + # Commands only run by the workers + {{ .Container.Commands.WorkerPre}} {{ if .Spec.Logging.Quiet }}> /dev/null 2>&1{{ end }} + + # Sleep until the broker is ready + {{ if not .Spec.Logging.Quiet }}printf "\nšŸŒ€ {{.Container.Commands.Prefix}} flux start -o --config /etc/flux/config ${brokerOptions}\n"{{ end }} + while true + do + {{ if .Spec.Logging.Timed }}/usr/bin/time -f "FLUXTIME fluxstart wall time %E" {{ end }}${asFlux} {{.Container.Commands.Prefix}} flux start -o --config /etc/flux/config ${brokerOptions} + retval=$? + {{ if not .Spec.Logging.Quiet }}printf "Return value for follower worker is ${retval}\n"{{ end }} + if [[ "${retval}" -eq 0 ]]; then + {{ if not .Spec.Logging.Quiet }}printf "The follower worker exited cleanly. Goodbye!\n"{{ end }} + break + fi + {{ if not .Spec.Logging.Quiet }}printf "\nšŸ˜Ŗ Sleeping 15s until broker is ready..."{{ end }} + sleep 15 + done + {{ .Container.Commands.Post}} +fi + diff --git a/controllers/flux/volumes.go b/controllers/flux/volumes.go index 80813273..6fb94317 100644 --- a/controllers/flux/volumes.go +++ b/controllers/flux/volumes.go @@ -53,20 +53,21 @@ func getVolumeMounts(cluster *api.MiniCluster) []corev1.VolumeMount { } // getVolumes that are shared between MiniCluster and statefulset -func getVolumes(cluster *api.MiniCluster) []corev1.Volume { +func getVolumes(cluster *api.MiniCluster, entrypoint string) []corev1.Volume { // Runner start scripts makeExecutable := int32(0777) runnerStartScripts := []corev1.KeyToPath{} - // Prepare a custom "wait.sh" for each container based on index + // Prepare a custom "broker.sh" or "worker.sh" entrypoint + // for each container based on index for i, container := range cluster.Spec.Containers { // For now, only Flux runners get the custom wait.sh script if container.RunFlux { startScript := corev1.KeyToPath{ - Key: fmt.Sprintf("wait-%d", i), - Path: fmt.Sprintf("wait-%d.sh", i), + Key: fmt.Sprintf("%s-%d", entrypoint, i), + Path: fmt.Sprintf("%s-%d.sh", entrypoint, i), Mode: &makeExecutable, } runnerStartScripts = append(runnerStartScripts, startScript) diff --git a/docs/tutorials/index.md b/docs/tutorials/index.md index a68705db..0453ed6e 100644 --- a/docs/tutorials/index.md +++ b/docs/tutorials/index.md @@ -22,6 +22,10 @@ The following tutorials are provided from their respective directories (and are ### Experimental +#### Kubernetes + + - [JobSet](https://github.com/flux-framework/flux-operator/tree/main/examples/test/jobset/minicluster.yaml): + #### Nested - [K3s](https://github.com/flux-framework/flux-operator/tree/main/examples/nested/k3s/basic): instiatiate k3s inside Flux, and deploy an app. diff --git a/docs/tutorials/jobset.md b/docs/tutorials/jobset.md new file mode 100644 index 00000000..f966a228 --- /dev/null +++ b/docs/tutorials/jobset.md @@ -0,0 +1,33 @@ +# Testing JobSet + +In this tutorial we will test an implementation using JobSet. The installation of the operator is the equivalent, +but you will need to [install JobSet first](https://github.com/kubernetes-sigs/jobset). + +## Setup + +Create a kind cluster. + +```bash +$ kind create cluster +``` + +Install the JobSet (it won't work if you don't!): + +```bash +VERSION=v0.1.3 +kubectl apply --server-side -f https://github.com/kubernetes-sigs/jobset/releases/download/$VERSION/manifests.yaml +``` + +Now let's try creating a hello world example MiniCluster with the JobSet. + +```bash +$ kubectl create namespace flux-operator +$ kubectl apply -f examples/dist/flux-operator-dev.yaml +$ kubectl apply -f examples/tests/jobset/minicluster.yaml +``` + +This is a WIP! The JobSet (when installed as above) isn't seen by the operator: + +```bash +2023-05-09T00:09:51Z ERROR Reconciler error {"controller": "minicluster", "controllerGroup": "flux-framework.org", "controllerKind": "MiniCluster", "MiniCluster": {"name":"flux-sample","namespace":"flux-operator"}, "namespace": "flux-operator", "name": "flux-sample", "reconcileID": "1db5223d-1f8a-4e49-a219-8d3ba55de826", "error": "no kind is registered for the type v1alpha1.JobSet in scheme \"pkg/runtime/scheme.go:100\""} +``` \ No newline at end of file diff --git a/examples/tests/hello-world/00-hello-world.yaml b/examples/tests/hello-world/00-hello-world.yaml deleted file mode 100644 index 553c3b2c..00000000 --- a/examples/tests/hello-world/00-hello-world.yaml +++ /dev/null @@ -1,6 +0,0 @@ -apiVersion: kuttl.dev/v1beta1 -kind: TestStep -commands: - - command: /bin/bash ./test.sh - namespaced: true -timeout: 60 diff --git a/examples/tests/hello-world/minicluster.yaml b/examples/tests/hello-world/minicluster.yaml index a8358514..5d6b9807 100644 --- a/examples/tests/hello-world/minicluster.yaml +++ b/examples/tests/hello-world/minicluster.yaml @@ -14,4 +14,4 @@ spec: # This is a list because a pod can support multiple containers containers: - image: ghcr.io/flux-framework/flux-restful-api:latest - command: echo hello world + command: echo hello world \ No newline at end of file diff --git a/examples/tests/jobset/minicluster.yaml b/examples/tests/jobset/minicluster.yaml new file mode 100644 index 00000000..df185359 --- /dev/null +++ b/examples/tests/jobset/minicluster.yaml @@ -0,0 +1,19 @@ +apiVersion: flux-framework.org/v1alpha1 +kind: MiniCluster +metadata: + name: flux-sample + namespace: flux-operator +spec: + # suppress all output except for test run + logging: + quiet: true + + # Number of pods to create for MiniCluster + size: 4 + + # This is a list because a pod can support multiple containers + containers: + - image: ghcr.io/flux-framework/flux-restful-api:latest + command: echo hello world + commands: + post: sleep infinity diff --git a/go.mod b/go.mod index 41909d2f..715eb916 100644 --- a/go.mod +++ b/go.mod @@ -1,85 +1,79 @@ module flux-framework/flux-operator -go 1.18 +go 1.20 require ( - github.com/go-logr/logr v1.2.3 - github.com/google/uuid v1.1.2 + github.com/go-logr/logr v1.2.4 + github.com/google/uuid v1.3.0 github.com/mitchellh/hashstructure/v2 v2.0.2 github.com/onsi/ginkgo v1.16.5 - github.com/onsi/gomega v1.19.0 - gopkg.in/yaml.v3 v3.0.1 - k8s.io/api v0.25.0 - k8s.io/apiextensions-apiserver v0.24.0 - k8s.io/apimachinery v0.25.0 - k8s.io/client-go v0.25.0 - k8s.io/klog/v2 v2.70.1 - sigs.k8s.io/controller-runtime v0.12.1 + github.com/onsi/ginkgo/v2 v2.9.4 + github.com/onsi/gomega v1.27.6 + k8s.io/api v0.26.4 + k8s.io/apiextensions-apiserver v0.26.3 + k8s.io/apimachinery v0.26.4 + k8s.io/client-go v0.26.4 + k8s.io/klog/v2 v2.90.1 + k8s.io/kube-openapi v0.0.0-20230327201221-f5883ff37f0c + sigs.k8s.io/controller-runtime v0.14.6 + sigs.k8s.io/jobset v0.1.3 ) require ( - cloud.google.com/go v0.97.0 // indirect - github.com/Azure/go-autorest v14.2.0+incompatible // indirect - github.com/Azure/go-autorest/autorest v0.11.27 // indirect - github.com/Azure/go-autorest/autorest/adal v0.9.20 // indirect - github.com/Azure/go-autorest/autorest/date v0.3.0 // indirect - github.com/Azure/go-autorest/logger v0.2.1 // indirect - github.com/Azure/go-autorest/tracing v0.6.0 // indirect - github.com/PuerkitoBio/purell v1.1.1 // indirect - github.com/PuerkitoBio/urlesc v0.0.0-20170810143723-de5bf2ad4578 // indirect github.com/beorn7/perks v1.0.1 // indirect - github.com/cespare/xxhash/v2 v2.1.2 // indirect + github.com/cespare/xxhash/v2 v2.2.0 // indirect github.com/davecgh/go-spew v1.1.1 // indirect - github.com/emicklei/go-restful/v3 v3.8.0 // indirect - github.com/evanphx/json-patch v4.12.0+incompatible // indirect - github.com/fsnotify/fsnotify v1.5.1 // indirect - github.com/go-logr/zapr v1.2.0 // indirect - github.com/go-openapi/jsonpointer v0.19.5 // indirect - github.com/go-openapi/jsonreference v0.19.5 // indirect - github.com/go-openapi/swag v0.19.14 // indirect + github.com/emicklei/go-restful/v3 v3.10.2 // indirect + github.com/evanphx/json-patch/v5 v5.6.0 // indirect + github.com/fsnotify/fsnotify v1.6.0 // indirect + github.com/go-logr/zapr v1.2.3 // indirect + github.com/go-openapi/jsonpointer v0.19.6 // indirect + github.com/go-openapi/jsonreference v0.20.2 // indirect + github.com/go-openapi/swag v0.22.3 // indirect + github.com/go-task/slim-sprig v0.0.0-20230315185526-52ccab3ef572 // indirect github.com/gogo/protobuf v1.3.2 // indirect - github.com/golang-jwt/jwt/v4 v4.2.0 // indirect github.com/golang/groupcache v0.0.0-20210331224755-41bb18bfe9da // indirect - github.com/golang/protobuf v1.5.2 // indirect - github.com/google/gnostic v0.5.7-v3refs // indirect - github.com/google/go-cmp v0.5.6 // indirect - github.com/google/gofuzz v1.1.0 // indirect - github.com/imdario/mergo v0.3.12 // indirect + github.com/golang/protobuf v1.5.3 // indirect + github.com/google/gnostic v0.6.9 // indirect + github.com/google/go-cmp v0.5.9 // indirect + github.com/google/gofuzz v1.2.0 // indirect + github.com/google/pprof v0.0.0-20210720184732-4bb14d4b1be1 // indirect + github.com/imdario/mergo v0.3.15 // indirect github.com/josharian/intern v1.0.0 // indirect github.com/json-iterator/go v1.1.12 // indirect - github.com/mailru/easyjson v0.7.6 // indirect - github.com/matttproud/golang_protobuf_extensions v1.0.2-0.20181231171920-c182affec369 // indirect + github.com/mailru/easyjson v0.7.7 // indirect + github.com/matttproud/golang_protobuf_extensions v1.0.4 // indirect github.com/moby/spdystream v0.2.0 // indirect github.com/modern-go/concurrent v0.0.0-20180306012644-bacd9c7ef1dd // indirect github.com/modern-go/reflect2 v1.0.2 // indirect github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822 // indirect github.com/nxadm/tail v1.4.8 // indirect github.com/pkg/errors v0.9.1 // indirect - github.com/prometheus/client_golang v1.12.1 // indirect - github.com/prometheus/client_model v0.2.0 // indirect - github.com/prometheus/common v0.32.1 // indirect - github.com/prometheus/procfs v0.7.3 // indirect + github.com/prometheus/client_golang v1.14.0 // indirect + github.com/prometheus/client_model v0.3.0 // indirect + github.com/prometheus/common v0.42.0 // indirect + github.com/prometheus/procfs v0.9.0 // indirect github.com/spf13/pflag v1.0.5 // indirect - go.uber.org/atomic v1.7.0 // indirect - go.uber.org/multierr v1.6.0 // indirect - go.uber.org/zap v1.19.1 // indirect - golang.org/x/crypto v0.0.0-20220315160706-3147a52a75dd // indirect - golang.org/x/net v0.0.0-20220722155237-a158d28d115b // indirect - golang.org/x/oauth2 v0.0.0-20211104180415-d3ed0bb246c8 // indirect - golang.org/x/sys v0.0.0-20220722155257-8c9f86f7a55f // indirect - golang.org/x/term v0.0.0-20210927222741-03fcf44c2211 // indirect - golang.org/x/text v0.3.7 // indirect - golang.org/x/time v0.0.0-20220210224613-90d013bbcef8 // indirect + go.uber.org/atomic v1.10.0 // indirect + go.uber.org/multierr v1.11.0 // indirect + go.uber.org/zap v1.24.0 // indirect + golang.org/x/net v0.9.0 // indirect + golang.org/x/oauth2 v0.6.0 // indirect + golang.org/x/sys v0.7.0 // indirect + golang.org/x/term v0.7.0 // indirect + golang.org/x/text v0.9.0 // indirect + golang.org/x/time v0.3.0 // indirect + golang.org/x/tools v0.8.0 // indirect gomodules.xyz/jsonpatch/v2 v2.2.0 // indirect google.golang.org/appengine v1.6.7 // indirect - google.golang.org/protobuf v1.28.0 // indirect + google.golang.org/protobuf v1.30.0 // indirect gopkg.in/inf.v0 v0.9.1 // indirect gopkg.in/tomb.v1 v1.0.0-20141024135613-dd632973f1e7 // indirect gopkg.in/yaml.v2 v2.4.0 // indirect - k8s.io/component-base v0.24.0 // indirect - k8s.io/kube-openapi v0.0.0-20220803162953-67bda5d908f1 // indirect - k8s.io/utils v0.0.0-20220728103510-ee6ede2d64ed // indirect - sigs.k8s.io/json v0.0.0-20220713155537-f223a00ba0e2 // indirect + gopkg.in/yaml.v3 v3.0.1 // indirect + k8s.io/component-base v0.26.3 // indirect + k8s.io/utils v0.0.0-20230313181309-38a27ef9d749 // indirect + sigs.k8s.io/json v0.0.0-20221116044647-bc3834ca7abd // indirect sigs.k8s.io/structured-merge-diff/v4 v4.2.3 // indirect sigs.k8s.io/yaml v1.3.0 // indirect ) diff --git a/go.sum b/go.sum index f760fb96..00a34a74 100644 --- a/go.sum +++ b/go.sum @@ -1,223 +1,74 @@ cloud.google.com/go v0.26.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw= cloud.google.com/go v0.34.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw= -cloud.google.com/go v0.38.0/go.mod h1:990N+gfupTy94rShfmMCWGDn0LpTmnzTp2qbd1dvSRU= -cloud.google.com/go v0.44.1/go.mod h1:iSa0KzasP4Uvy3f1mN/7PiObzGgflwredwwASm/v6AU= -cloud.google.com/go v0.44.2/go.mod h1:60680Gw3Yr4ikxnPRS/oxxkBccT6SA1yMk63TGekxKY= -cloud.google.com/go v0.45.1/go.mod h1:RpBamKRgapWJb87xiFSdk4g1CME7QZg3uwTez+TSTjc= -cloud.google.com/go v0.46.3/go.mod h1:a6bKKbmY7er1mI7TEI4lsAkts/mkhTSZK8w33B4RAg0= -cloud.google.com/go v0.50.0/go.mod h1:r9sluTvynVuxRIOHXQEHMFffphuXHOMZMycpNR5e6To= -cloud.google.com/go v0.52.0/go.mod h1:pXajvRH/6o3+F9jDHZWQ5PbGhn+o8w9qiu/CffaVdO4= -cloud.google.com/go v0.53.0/go.mod h1:fp/UouUEsRkN6ryDKNW/Upv/JBKnv6WDthjR6+vze6M= -cloud.google.com/go v0.54.0/go.mod h1:1rq2OEkV3YMf6n/9ZvGWI3GWw0VoqH/1x2nd8Is/bPc= -cloud.google.com/go v0.56.0/go.mod h1:jr7tqZxxKOVYizybht9+26Z/gUq7tiRzu+ACVAMbKVk= -cloud.google.com/go v0.57.0/go.mod h1:oXiQ6Rzq3RAkkY7N6t3TcE6jE+CIBBbA36lwQ1JyzZs= -cloud.google.com/go v0.62.0/go.mod h1:jmCYTdRCQuc1PHIIJ/maLInMho30T/Y0M4hTdTShOYc= -cloud.google.com/go v0.65.0/go.mod h1:O5N8zS7uWy9vkA9vayVHs65eM1ubvY4h553ofrNHObY= -cloud.google.com/go v0.72.0/go.mod h1:M+5Vjvlc2wnp6tjzE102Dw08nGShTscUx2nZMufOKPI= -cloud.google.com/go v0.74.0/go.mod h1:VV1xSbzvo+9QJOxLDaJfTjx5e+MePCpCWwvftOeQmWk= -cloud.google.com/go v0.78.0/go.mod h1:QjdrLG0uq+YwhjoVOLsS1t7TW8fs36kLs4XO5R5ECHg= -cloud.google.com/go v0.79.0/go.mod h1:3bzgcEeQlzbuEAYu4mrWhKqWjmpprinYgKJLgKHnbb8= -cloud.google.com/go v0.81.0/go.mod h1:mk/AM35KwGk/Nm2YSeZbxXdrNK3KZOYHmLkOqC2V6E0= -cloud.google.com/go v0.83.0/go.mod h1:Z7MJUsANfY0pYPdw0lbnivPx4/vhy/e2FEkSkF7vAVY= -cloud.google.com/go v0.84.0/go.mod h1:RazrYuxIK6Kb7YrzzhPoLmCVzl7Sup4NrbKPg8KHSUM= -cloud.google.com/go v0.87.0/go.mod h1:TpDYlFy7vuLzZMMZ+B6iRiELaY7z/gJPaqbMx6mlWcY= -cloud.google.com/go v0.90.0/go.mod h1:kRX0mNRHe0e2rC6oNakvwQqzyDmg57xJ+SZU1eT2aDQ= -cloud.google.com/go v0.93.3/go.mod h1:8utlLll2EF5XMAV15woO4lSbWQlk8rer9aLOfLh7+YI= -cloud.google.com/go v0.94.1/go.mod h1:qAlAugsXlC+JWO+Bke5vCtc9ONxjQT3drlTTnAplMW4= -cloud.google.com/go v0.97.0 h1:3DXvAyifywvq64LfkKaMOmkWPS1CikIQdMe2lY9vxU8= -cloud.google.com/go v0.97.0/go.mod h1:GF7l59pYBVlXQIBLx3a761cZ41F9bBH3JUlihCt2Udc= -cloud.google.com/go/bigquery v1.0.1/go.mod h1:i/xbL2UlR5RvWAURpBYZTtm/cXjCha9lbfbpx4poX+o= 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h1:jhfEVHT8odbXTkndysNHCcx0awwzvfOlguIAii9o8iA= -cloud.google.com/go/pubsub v1.3.1/go.mod h1:i+ucay31+CNRpDW4Lu78I4xXG+O1r/MAHgjpRVR+TSU= -cloud.google.com/go/storage v1.0.0/go.mod h1:IhtSnM/ZTZV8YYJWCY8RULGVqBDmpoyjwiyrjsg+URw= -cloud.google.com/go/storage v1.5.0/go.mod h1:tpKbwo567HUNpVclU5sGELwQWBDZ8gh0ZeosJ0Rtdos= -cloud.google.com/go/storage v1.6.0/go.mod h1:N7U0C8pVQ/+NIKOBQyamJIeKQKkZ+mxpohlUTyfDhBk= -cloud.google.com/go/storage v1.8.0/go.mod h1:Wv1Oy7z6Yz3DshWRJFhqM/UCfaWIRTdp0RXyy7KQOVs= -cloud.google.com/go/storage v1.10.0/go.mod h1:FLPqc6j+Ki4BU591ie1oL6qBQGu2Bl/tZ9ullr3+Kg0= -dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU= -github.com/Azure/go-ansiterm v0.0.0-20210617225240-d185dfc1b5a1/go.mod h1:xomTg63KZ2rFqZQzSB4Vz2SUXa1BpHTVz9L5PTmPC4E= -github.com/Azure/go-autorest v14.2.0+incompatible h1:V5VMDjClD3GiElqLWO7mz2MxNAK/vTfRHdAubSIPRgs= -github.com/Azure/go-autorest v14.2.0+incompatible/go.mod 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h1:a2VclLzOGrwOHDiV8EfBGhvjHvP46CtW5j6POvhYGGo= sigs.k8s.io/yaml v1.3.0/go.mod h1:GeOyir5tyXNByN85N/dRIT9es5UQNerPYEKK56eTBm8= From 8a17f382527e3910cd82db6f7ace0c524be47608 Mon Sep 17 00:00:00 2001 From: vsoch Date: Mon, 8 May 2023 23:17:53 -0600 Subject: [PATCH 2/3] first go of jobset wroking we were not able to use the jobset networking, but instead fell back to our custom headless service with a job-group selector Signed-off-by: vsoch --- .github/workflows/main.yaml | 2 + .github/workflows/test-python.yaml | 2 + Makefile | 1 + chart/templates/manager-rbac.yaml | 26 ++++++ config/rbac/role.yaml | 26 ++++++ controllers/flux/containers.go | 3 +- controllers/flux/job.go | 100 --------------------- controllers/flux/jobset.go | 32 ++++--- controllers/flux/minicluster.go | 21 ++--- controllers/flux/minicluster_controller.go | 3 + controllers/flux/pods.go | 23 ++++- controllers/flux/templates/broker.toml | 2 +- docs/tutorials/jobset.md | 35 +++++++- examples/dist/flux-operator.yaml | 26 ++++++ examples/tests/jobset/minicluster.yaml | 8 +- main.go | 4 + 16 files changed, 179 insertions(+), 135 deletions(-) delete mode 100644 controllers/flux/job.go diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml index a796236d..cff7d182 100644 --- a/.github/workflows/main.yaml +++ b/.github/workflows/main.yaml @@ -101,6 +101,8 @@ jobs: fi make deploy-local minikube image load ghcr.io/flux-framework/flux-operator:test + VERSION=v0.1.3 + kubectl apply --server-side -f https://github.com/kubernetes-sigs/jobset/releases/download/$VERSION/manifests.yaml kubectl apply -f examples/dist/flux-operator-local.yaml - name: Test ${{ matrix.test[0] }} diff --git a/.github/workflows/test-python.yaml b/.github/workflows/test-python.yaml index fad67bbd..f5abbf81 100644 --- a/.github/workflows/test-python.yaml +++ b/.github/workflows/test-python.yaml @@ -71,6 +71,8 @@ jobs: minikube ssh docker pull ${container} make deploy-local minikube image load ghcr.io/flux-framework/flux-operator:test + VERSION=v0.1.3 + kubectl apply --server-side -f https://github.com/kubernetes-sigs/jobset/releases/download/$VERSION/manifests.yaml kubectl apply -f examples/dist/flux-operator-local.yaml - name: Test ${{ matrix.test[0] }} diff --git a/Makefile b/Makefile index 3570930f..82b0020b 100644 --- a/Makefile +++ b/Makefile @@ -165,6 +165,7 @@ clean: kubectl delete -n flux-operator pods --all --grace-period=0 --force kubectl delete -n flux-operator pvc --all --grace-period=0 --force kubectl delete -n flux-operator pv --all --grace-period=0 --force + kubectl delete -n flux-operator jobset --all --grace-period=0 --force kubectl delete -n flux-operator jobs --all --grace-period=0 --force kubectl delete -n flux-operator MiniCluster --all --grace-period=0 --force diff --git a/chart/templates/manager-rbac.yaml b/chart/templates/manager-rbac.yaml index 97462bd1..20fcf79d 100644 --- a/chart/templates/manager-rbac.yaml +++ b/chart/templates/manager-rbac.yaml @@ -273,6 +273,32 @@ rules: - patch - update - watch +- apiGroups: + - jobset.x-k8s.io + resources: + - jobsets + verbs: + - create + - delete + - get + - list + - patch + - update + - watch +- apiGroups: + - jobset.x-k8s.io + resources: + - jobsets/finalizers + verbs: + - update +- apiGroups: + - jobset.x-k8s.io + resources: + - jobsets/status + verbs: + - get + - patch + - update - apiGroups: - networking.k8s.io resources: diff --git a/config/rbac/role.yaml b/config/rbac/role.yaml index 8cef0c43..4ccd30f8 100644 --- a/config/rbac/role.yaml +++ b/config/rbac/role.yaml @@ -273,6 +273,32 @@ rules: - patch - update - watch +- apiGroups: + - jobset.x-k8s.io + resources: + - jobsets + verbs: + - create + - delete + - get + - list + - patch + - update + - watch +- apiGroups: + - jobset.x-k8s.io + resources: + - jobsets/finalizers + verbs: + - update +- apiGroups: + - jobset.x-k8s.io + resources: + - jobsets/status + verbs: + - get + - patch + - update - apiGroups: - networking.k8s.io resources: diff --git a/controllers/flux/containers.go b/controllers/flux/containers.go index 9ff8fe18..222ccbb2 100644 --- a/controllers/flux/containers.go +++ b/controllers/flux/containers.go @@ -23,6 +23,7 @@ func (r *MiniClusterReconciler) getContainers( specs []api.MiniClusterContainer, defaultName string, mounts []corev1.VolumeMount, + entrypoint string, ) ([]corev1.Container, error) { // Create the containers for the pod @@ -45,7 +46,7 @@ func (r *MiniClusterReconciler) getContainers( if container.RunFlux { // wait.sh path corresponds to container identifier - waitScript := fmt.Sprintf("/flux_operator/wait-%d.sh", i) + waitScript := fmt.Sprintf("/flux_operator/%s-%d.sh", entrypoint, i) command = []string{"/bin/bash", waitScript, container.Command} containerName = defaultName } diff --git a/controllers/flux/job.go b/controllers/flux/job.go deleted file mode 100644 index 2e952f45..00000000 --- a/controllers/flux/job.go +++ /dev/null @@ -1,100 +0,0 @@ -/* -Copyright 2022-2023 Lawrence Livermore National Security, LLC - (c.f. AUTHORS, NOTICE.LLNS, COPYING) - -This is part of the Flux resource manager framework. -For details, see https://github.com/flux-framework. - -SPDX-License-Identifier: Apache-2.0 -*/ - -package controllers - -import ( - batchv1 "k8s.io/api/batch/v1" - corev1 "k8s.io/api/core/v1" - metav1 "k8s.io/apimachinery/pkg/apis/meta/v1" - ctrl "sigs.k8s.io/controller-runtime" - - api "flux-framework/flux-operator/api/v1alpha1" -) - -// newMiniCluster is used to create the MiniCluster Job -func (r *MiniClusterReconciler) newMiniClusterJob( - cluster *api.MiniCluster, -) (*batchv1.Job, error) { - - // Number of retries before marking as failed - backoffLimit := int32(100) - completionMode := batchv1.IndexedCompletion - podLabels := r.getPodLabels(cluster) - setAsFQDN := false - - // This is an indexed-job - job := &batchv1.Job{ - ObjectMeta: metav1.ObjectMeta{ - Name: cluster.Name, - Namespace: cluster.Namespace, - Labels: cluster.Spec.JobLabels, - }, - - Spec: batchv1.JobSpec{ - - BackoffLimit: &backoffLimit, - Completions: &cluster.Spec.Size, - Parallelism: &cluster.Spec.Size, - CompletionMode: &completionMode, - ActiveDeadlineSeconds: &cluster.Spec.DeadlineSeconds, - - // Note there is parameter to limit runtime - Template: corev1.PodTemplateSpec{ - ObjectMeta: metav1.ObjectMeta{ - Name: cluster.Name, - Namespace: cluster.Namespace, - Labels: podLabels, - Annotations: cluster.Spec.Pod.Annotations, - }, - Spec: corev1.PodSpec{ - // matches the service - Subdomain: restfulServiceName, - SetHostnameAsFQDN: &setAsFQDN, - // Not currently in use, commented out for now - //Volumes: getVolumes(cluster), - RestartPolicy: corev1.RestartPolicyOnFailure, - ImagePullSecrets: getImagePullSecrets(cluster), - ServiceAccountName: cluster.Spec.Pod.ServiceAccountName, - NodeSelector: cluster.Spec.Pod.NodeSelector, - }}, - }, - } - - // Get resources for the pod - resources, err := r.getPodResources(cluster) - r.log.Info("šŸŒ€ MiniCluster", "Pod.Resources", resources) - if err != nil { - r.log.Info("šŸŒ€ MiniCluster", "Pod.Resources", resources) - return job, err - } - job.Spec.Template.Spec.Overhead = resources - - // Get volume mounts, add on container specific ones - mounts := getVolumeMounts(cluster) - containers, err := r.getContainers(cluster.Spec.Containers, cluster.Name, mounts) - job.Spec.Template.Spec.Containers = containers - ctrl.SetControllerReference(cluster, job, r.Scheme) - return job, err -} - -// getImagePullSecrets returns a list of secret object references for each container. -func getImagePullSecrets(cluster *api.MiniCluster) []corev1.LocalObjectReference { - pullSecrets := []corev1.LocalObjectReference{} - for _, container := range cluster.Spec.Containers { - if container.ImagePullSecret != "" { - newSecret := corev1.LocalObjectReference{ - Name: container.ImagePullSecret, - } - pullSecrets = append(pullSecrets, newSecret) - } - } - return pullSecrets -} diff --git a/controllers/flux/jobset.go b/controllers/flux/jobset.go index 2bdfd6df..856a1f2b 100644 --- a/controllers/flux/jobset.go +++ b/controllers/flux/jobset.go @@ -17,6 +17,7 @@ import ( api "flux-framework/flux-operator/api/v1alpha1" + ctrl "sigs.k8s.io/controller-runtime" jobset "sigs.k8s.io/jobset/api/v1alpha1" ) @@ -24,16 +25,18 @@ func (r *MiniClusterReconciler) newJobSet( cluster *api.MiniCluster, ) (*jobset.JobSet, error) { - suspend := true + // When suspend is true we have a hard time debugging jobs, so keep false + suspend := false jobs := jobset.JobSet{ ObjectMeta: metav1.ObjectMeta{ - Name: cluster.Name, + Name: "minicluster", Namespace: cluster.Namespace, Labels: cluster.Spec.JobLabels, }, Spec: jobset.JobSetSpec{ - // Suspend child jobs (the worker pods) when broker finishes + // This might be the control for child jobs (worker) + // But I don't think we need this anymore. Suspend: &suspend, // TODO decide on FailurePolicy here // default is to fail if all jobs in jobset fail @@ -41,8 +44,10 @@ func (r *MiniClusterReconciler) newJobSet( } // Get leader broker job, the parent in the JobSet (worker or follower pods) + // Both are required to be in indexed completion mode to have a service! + // I'm not sure that totally makes sense, will suggest a change. // cluster, size, entrypoint, indexed - leaderJob, err := r.getJob(cluster, 1, "broker", false) + leaderJob, err := r.getJob(cluster, 1, "broker", true) if err != nil { return &jobs, err } @@ -51,10 +56,11 @@ func (r *MiniClusterReconciler) newJobSet( return &jobs, err } jobs.Spec.ReplicatedJobs = []jobset.ReplicatedJob{leaderJob, workerJob} + ctrl.SetControllerReference(cluster, &jobs, r.Scheme) return &jobs, nil } -// getBrokerJob creates the job for the main leader broker +// getJob creates a job for a main leader (broker) or worker (followers) func (r *MiniClusterReconciler) getJob( cluster *api.MiniCluster, size int32, @@ -64,18 +70,19 @@ func (r *MiniClusterReconciler) getJob( backoffLimit := int32(100) podLabels := r.getPodLabels(cluster) - enableDNSHostnames := true + enableDNSHostnames := false completionMode := batchv1.NonIndexedCompletion if indexed { completionMode = batchv1.IndexedCompletion } - // TODO how are these named job := jobset.ReplicatedJob{ Name: cluster.Name + "-" + entrypoint, - // Allow pods to be reached by their hostnames! A simple boolean! Chef's kiss! + // This would allow pods to be reached by their hostnames! + // It doesn't work for the Flux broker config at the moment, + // but could if we are allowed to specify the service name. // ---.- Network: &jobset.Network{ EnableDNSHostnames: &enableDNSHostnames, @@ -110,7 +117,7 @@ func (r *MiniClusterReconciler) getJob( }, Spec: corev1.PodSpec{ // matches the service - // Subdomain: restfulServiceName, + Subdomain: restfulServiceName, Volumes: getVolumes(cluster, entrypoint), RestartPolicy: corev1.RestartPolicyOnFailure, ImagePullSecrets: getImagePullSecrets(cluster), @@ -130,7 +137,12 @@ func (r *MiniClusterReconciler) getJob( // Get volume mounts, add on container specific ones mounts := getVolumeMounts(cluster) - containers, err := r.getContainers(cluster.Spec.Containers, cluster.Name, mounts) + containers, err := r.getContainers( + cluster.Spec.Containers, + cluster.Name, + mounts, + entrypoint, + ) jobspec.Template.Spec.Containers = containers job.Template.Spec = jobspec return job, err diff --git a/controllers/flux/minicluster.go b/controllers/flux/minicluster.go index 78a26f9e..0a042eb1 100644 --- a/controllers/flux/minicluster.go +++ b/controllers/flux/minicluster.go @@ -89,13 +89,11 @@ func (r *MiniClusterReconciler) ensureMiniCluster( } // Create headless service for the MiniCluster - // We should not technically need this anymore. - // TODO I need to test the cluster, but I can't get the JobSet working - //selector := map[string]string{"job-name": cluster.Name} - //result, err = r.exposeServices(ctx, cluster, restfulServiceName, selector) - //if err != nil { - // return result, err - //} + selector := map[string]string{"job-group": cluster.Name} + result, err = r.exposeServices(ctx, cluster, restfulServiceName, selector) + if err != nil { + return result, err + } // Create the batch job that brings it all together! // A batchv1.Job can hold a spec for containers that use the configs we just made @@ -452,16 +450,19 @@ func (r *MiniClusterReconciler) getConfigMap( func generateHostlist(cluster *api.MiniCluster, size int) string { // The hosts are generated through the max size, so the cluster can expand - return fmt.Sprintf("%s-[%s]", cluster.Name, generateRange(size)) + // minicluster-flux-sample-broker-0-0 + // minicluster-flux-sample-worker-0-1 through 0-3 for a size 4 cluster + return fmt.Sprintf("minicluster-%s-broker-0-0,minicluster-%s-worker-0-[%s]", cluster.Name, cluster.Name, generateRange(size-1)) } // generateFluxConfig creates the broker.toml file used to boostrap flux func generateFluxConfig(cluster *api.MiniCluster) string { // The hosts are generated through the max size, so the cluster can expand + brokerFqdn := fmt.Sprintf("minicluster-%s-broker-0-0", cluster.Name) fqdn := fmt.Sprintf("%s.%s.svc.cluster.local", restfulServiceName, cluster.Namespace) - hosts := fmt.Sprintf("[%s]", generateRange(int(cluster.Spec.MaxSize))) - fluxConfig := fmt.Sprintf(brokerConfigTemplate, fqdn, cluster.Name, hosts) + hosts := fmt.Sprintf("%s, minicluster-%s-worker-0-[%s]", brokerFqdn, cluster.Name, generateRange(int(cluster.Spec.MaxSize-1))) + fluxConfig := fmt.Sprintf(brokerConfigTemplate, fqdn, hosts) fluxConfig += "\n" + brokerArchiveSection return fluxConfig } diff --git a/controllers/flux/minicluster_controller.go b/controllers/flux/minicluster_controller.go index 26293aa8..46c8735e 100644 --- a/controllers/flux/minicluster_controller.go +++ b/controllers/flux/minicluster_controller.go @@ -89,6 +89,9 @@ func NewMiniClusterReconciler( //+kubebuilder:rbac:groups=networking.k8s.io,resources="ingresses",verbs=get;list;watch;create;update;patch;delete //+kubebuilder:rbac:groups="",resources=events,verbs=create;watch;update +//+kubebuilder:rbac:groups=jobset.x-k8s.io,resources=jobsets,verbs=get;list;watch;create;update;patch;delete +//+kubebuilder:rbac:groups=jobset.x-k8s.io,resources=jobsets/status,verbs=get;update;patch +//+kubebuilder:rbac:groups=jobset.x-k8s.io,resources=jobsets/finalizers,verbs=update //+kubebuilder:rbac:groups=batch,resources=jobs,verbs=get;list;watch;create;update;patch;delete;exec //+kubebuilder:rbac:groups=batch,resources=jobs/status,verbs=get;list;watch;create;update;patch;delete;exec diff --git a/controllers/flux/pods.go b/controllers/flux/pods.go index b54deb9e..3656434e 100644 --- a/controllers/flux/pods.go +++ b/controllers/flux/pods.go @@ -28,6 +28,8 @@ func (r *MiniClusterReconciler) getPodLabels(cluster *api.MiniCluster) map[strin podLabels := cluster.Spec.Pod.Labels podLabels["namespace"] = cluster.Namespace podLabels["app.kubernetes.io/name"] = cluster.Name + // This will select the service + podLabels["job-group"] = cluster.Name return podLabels } @@ -109,9 +111,6 @@ func (r *MiniClusterReconciler) newServicePod( podLabels := r.getPodLabels(cluster) podServiceName := cluster.Name + "-services" - // service selector? - podLabels["job-name"] = cluster.Name - // This is an indexed-job pod := &corev1.Pod{ ObjectMeta: metav1.ObjectMeta{ @@ -132,7 +131,9 @@ func (r *MiniClusterReconciler) newServicePod( }, } mounts := []corev1.VolumeMount{} - containers, err := r.getContainers(cluster.Spec.Services, podServiceName, mounts) + + // A service container has no entrypoint for a flux runner (empty string) + containers, err := r.getContainers(cluster.Spec.Services, podServiceName, mounts, "") if err != nil { return pod, err } @@ -140,3 +141,17 @@ func (r *MiniClusterReconciler) newServicePod( ctrl.SetControllerReference(cluster, pod, r.Scheme) return pod, err } + +// getImagePullSecrets returns a list of secret object references for each container. +func getImagePullSecrets(cluster *api.MiniCluster) []corev1.LocalObjectReference { + pullSecrets := []corev1.LocalObjectReference{} + for _, container := range cluster.Spec.Containers { + if container.ImagePullSecret != "" { + newSecret := corev1.LocalObjectReference{ + Name: container.ImagePullSecret, + } + pullSecrets = append(pullSecrets, newSecret) + } + } + return pullSecrets +} diff --git a/controllers/flux/templates/broker.toml b/controllers/flux/templates/broker.toml index e6f40fba..a8584c56 100644 --- a/controllers/flux/templates/broker.toml +++ b/controllers/flux/templates/broker.toml @@ -16,5 +16,5 @@ default_port = 8050 default_bind = "tcp://eth0:%%p" default_connect = "tcp://%%h.%s:%%p" hosts = [ - { host="%s-%s"}, + { host="%s"}, ] diff --git a/docs/tutorials/jobset.md b/docs/tutorials/jobset.md index f966a228..58778c0d 100644 --- a/docs/tutorials/jobset.md +++ b/docs/tutorials/jobset.md @@ -26,8 +26,39 @@ $ kubectl apply -f examples/dist/flux-operator-dev.yaml $ kubectl apply -f examples/tests/jobset/minicluster.yaml ``` -This is a WIP! The JobSet (when installed as above) isn't seen by the operator: +And then you can see the pods: ```bash -2023-05-09T00:09:51Z ERROR Reconciler error {"controller": "minicluster", "controllerGroup": "flux-framework.org", "controllerKind": "MiniCluster", "MiniCluster": {"name":"flux-sample","namespace":"flux-operator"}, "namespace": "flux-operator", "name": "flux-sample", "reconcileID": "1db5223d-1f8a-4e49-a219-8d3ba55de826", "error": "no kind is registered for the type v1alpha1.JobSet in scheme \"pkg/runtime/scheme.go:100\""} +kubectl get -n flux-operator pods +NAME READY STATUS RESTARTS AGE +minicluster-flux-sample-broker-0-0-fsv4p 1/1 Running 0 12m +minicluster-flux-sample-worker-0-0-tjg69 1/1 Running 0 12m +minicluster-flux-sample-worker-0-1-hwmbb 1/1 Running 0 12m +minicluster-flux-sample-worker-0-2-q246d 1/1 Running 0 12m +``` + +And that the broker is running and ready for dootie! I mean duty! :D + +``` +āœØ Curve certificate generated by helper pod +# **** Generated on 2023-04-26 22:54:42 by CZMQ **** +# ZeroMQ CURVE **Secret** Certificate +# DO NOT PROVIDE THIS FILE TO OTHER USERS nor change its permissions. + +metadata + name = "flux-cert-generator" + keygen.hostname = "flux-sample-0" +curve + public-key = "WCU!!@2t4>.:Khqg%bNFN#.lf*Eh)vlbVx^@s-is" + secret-key = "NXvRbbIU9KZ?&64Y#)09@zxSw20VT.FfH(J/sJ1-" + +šŸŒ€ flux start -o --config /etc/flux/config -Scron.directory=/etc/flux/system/cron.d -Stbon.fanout=256 -Srundir=/run/flux -Sstatedir=/var/lib/flux -Slocal-uri=local:///run/flux/local -Slog-stderr-level=6 -Slog-stderr-mode=local +broker.info[2]: start: none->join 0.434417ms +broker.info[2]: parent-ready: join->init 0.442597s +broker.info[2]: configuration updated +broker.info[2]: rc1.0: running /etc/flux/rc1.d/01-sched-fluxion +broker.info[2]: rc1.0: running /etc/flux/rc1.d/02-cron +broker.info[2]: rc1.0: /etc/flux/rc1 Exited (rc=0) 0.1s +broker.info[2]: rc1-success: init->quorum 0.12074s +broker.info[2]: quorum-full: quorum->run 0.201772s ``` \ No newline at end of file diff --git a/examples/dist/flux-operator.yaml b/examples/dist/flux-operator.yaml index fe82f2d9..1915c20f 100644 --- a/examples/dist/flux-operator.yaml +++ b/examples/dist/flux-operator.yaml @@ -1047,6 +1047,32 @@ rules: - patch - update - watch +- apiGroups: + - jobset.x-k8s.io + resources: + - jobsets + verbs: + - create + - delete + - get + - list + - patch + - update + - watch +- apiGroups: + - jobset.x-k8s.io + resources: + - jobsets/finalizers + verbs: + - update +- apiGroups: + - jobset.x-k8s.io + resources: + - jobsets/status + verbs: + - get + - patch + - update - apiGroups: - networking.k8s.io resources: diff --git a/examples/tests/jobset/minicluster.yaml b/examples/tests/jobset/minicluster.yaml index df185359..1b6a8686 100644 --- a/examples/tests/jobset/minicluster.yaml +++ b/examples/tests/jobset/minicluster.yaml @@ -4,16 +4,10 @@ metadata: name: flux-sample namespace: flux-operator spec: - # suppress all output except for test run - logging: - quiet: true - # Number of pods to create for MiniCluster size: 4 # This is a list because a pod can support multiple containers containers: - image: ghcr.io/flux-framework/flux-restful-api:latest - command: echo hello world - commands: - post: sleep infinity + command: sleep infinity \ No newline at end of file diff --git a/main.go b/main.go index a0bb2fe1..2b8999fd 100644 --- a/main.go +++ b/main.go @@ -31,6 +31,8 @@ import ( api "flux-framework/flux-operator/api/v1alpha1" + jobset "sigs.k8s.io/jobset/api/v1alpha1" + "flux-framework/flux-operator/controllers/core" //+kubebuilder:scaffold:imports ) @@ -44,6 +46,8 @@ func init() { utilruntime.Must(clientgoscheme.AddToScheme(scheme)) utilruntime.Must(api.AddToScheme(scheme)) + utilruntime.Must(jobset.AddToScheme(scheme)) + //+kubebuilder:scaffold:scheme } From 56fd2a77fa08460f412a5ace4acaf55b9ff6c065 Mon Sep 17 00:00:00 2001 From: vsoch Date: Fri, 19 May 2023 18:07:58 -0600 Subject: [PATCH 3/3] add SuccessPolicy and test broker as regular job Signed-off-by: vsoch --- controllers/flux/jobset.go | 12 +++++++-- docs/tutorials/jobset.md | 25 +++++++++++++++++-- .../tests/jobset/minicluster-complete.yaml | 13 ++++++++++ go.mod | 3 ++- go.sum | 4 +++ 5 files changed, 52 insertions(+), 5 deletions(-) create mode 100644 examples/tests/jobset/minicluster-complete.yaml diff --git a/controllers/flux/jobset.go b/controllers/flux/jobset.go index 856a1f2b..90ea97af 100644 --- a/controllers/flux/jobset.go +++ b/controllers/flux/jobset.go @@ -25,6 +25,9 @@ func (r *MiniClusterReconciler) newJobSet( cluster *api.MiniCluster, ) (*jobset.JobSet, error) { + // Name for the broker job for the failure policy + brokerJobName := cluster.Name + "-broker" + // When suspend is true we have a hard time debugging jobs, so keep false suspend := false jobs := jobset.JobSet{ @@ -35,6 +38,12 @@ func (r *MiniClusterReconciler) newJobSet( }, Spec: jobset.JobSetSpec{ + // The job is successful when the broker job finishes with completed (0) + SuccessPolicy: &jobset.SuccessPolicy{ + Operator: jobset.OperatorAny, + TargetReplicatedJobs: []string{brokerJobName}, + }, + // This might be the control for child jobs (worker) // But I don't think we need this anymore. Suspend: &suspend, @@ -44,8 +53,7 @@ func (r *MiniClusterReconciler) newJobSet( } // Get leader broker job, the parent in the JobSet (worker or follower pods) - // Both are required to be in indexed completion mode to have a service! - // I'm not sure that totally makes sense, will suggest a change. + // We have to do this as indexed for the predictable hostname // cluster, size, entrypoint, indexed leaderJob, err := r.getJob(cluster, 1, "broker", true) if err != nil { diff --git a/docs/tutorials/jobset.md b/docs/tutorials/jobset.md index 58778c0d..39872fe4 100644 --- a/docs/tutorials/jobset.md +++ b/docs/tutorials/jobset.md @@ -8,7 +8,7 @@ but you will need to [install JobSet first](https://github.com/kubernetes-sigs/j Create a kind cluster. ```bash -$ kind create cluster +$ kind create cluster --image kindest/node:v1.27.0 ``` Install the JobSet (it won't work if you don't!): @@ -18,6 +18,20 @@ VERSION=v0.1.3 kubectl apply --server-side -f https://github.com/kubernetes-sigs/jobset/releases/download/$VERSION/manifests.yaml ``` +If you are developing and want to install from the main branch: + +```bash +kubectl apply --server-side -k github.com/kubernetes-sigs/jobset/config/default?ref=main +``` + +And the go.mod will need to be updated by first doing: + +```bash +go get sigs.k8s.io/jobset@main +go mod vendor +go mod download +``` + Now let's try creating a hello world example MiniCluster with the JobSet. ```bash @@ -37,7 +51,7 @@ minicluster-flux-sample-worker-0-1-hwmbb 1/1 Running 0 12m minicluster-flux-sample-worker-0-2-q246d 1/1 Running 0 12m ``` -And that the broker is running and ready for dootie! I mean duty! :D +And that the broker is running and ready for duty! :D ``` āœØ Curve certificate generated by helper pod @@ -61,4 +75,11 @@ broker.info[2]: rc1.0: running /etc/flux/rc1.d/02-cron broker.info[2]: rc1.0: /etc/flux/rc1 Exited (rc=0) 0.1s broker.info[2]: rc1-success: init->quorum 0.12074s broker.info[2]: quorum-full: quorum->run 0.201772s +``` + +Delete that cluster, and now test a case that will finish (that one has a `sleep infinity`): + +```bash +$ kubectl delete -f examples/tests/jobset/minicluster.yaml +$ kubectl apply -f examples/tests/jobset/minicluster-complete.yaml ``` \ No newline at end of file diff --git a/examples/tests/jobset/minicluster-complete.yaml b/examples/tests/jobset/minicluster-complete.yaml new file mode 100644 index 00000000..3f2b1a68 --- /dev/null +++ b/examples/tests/jobset/minicluster-complete.yaml @@ -0,0 +1,13 @@ +apiVersion: flux-framework.org/v1alpha1 +kind: MiniCluster +metadata: + name: flux-sample + namespace: flux-operator +spec: + # Number of pods to create for MiniCluster + size: 4 + + # This is a list because a pod can support multiple containers + containers: + - image: ghcr.io/flux-framework/flux-restful-api:latest + command: sleep 15 \ No newline at end of file diff --git a/go.mod b/go.mod index 715eb916..210cd37a 100644 --- a/go.mod +++ b/go.mod @@ -16,7 +16,7 @@ require ( k8s.io/klog/v2 v2.90.1 k8s.io/kube-openapi v0.0.0-20230327201221-f5883ff37f0c sigs.k8s.io/controller-runtime v0.14.6 - sigs.k8s.io/jobset v0.1.3 + sigs.k8s.io/jobset v0.2.0-devel.0.20230519200217-2f65e5633234 ) require ( @@ -48,6 +48,7 @@ require ( github.com/modern-go/reflect2 v1.0.2 // indirect github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822 // indirect github.com/nxadm/tail v1.4.8 // indirect + github.com/open-policy-agent/cert-controller v0.7.0 // indirect github.com/pkg/errors v0.9.1 // indirect github.com/prometheus/client_golang v1.14.0 // indirect github.com/prometheus/client_model v0.3.0 // indirect diff --git a/go.sum b/go.sum index 00a34a74..f9cbd88e 100644 --- a/go.sum +++ b/go.sum @@ -149,6 +149,8 @@ github.com/onsi/gomega v1.7.1/go.mod h1:XdKZgCCFLUoM/7CFJVPcG8C1xQ1AJ0vpAezJrB7J github.com/onsi/gomega v1.10.1/go.mod h1:iN09h71vgCQne3DLsj+A5owkum+a2tYe+TOCB1ybHNo= github.com/onsi/gomega v1.27.6 h1:ENqfyGeS5AX/rlXDd/ETokDz93u0YufY1Pgxuy/PvWE= github.com/onsi/gomega v1.27.6/go.mod h1:PIQNjfQwkP3aQAH7lf7j87O/5FiNr+ZR8+ipb+qQlhg= +github.com/open-policy-agent/cert-controller v0.7.0 h1:5ggZjSQJ1YgkT+ngNAGBGHaOYfGuYq97IrNldchCoHI= +github.com/open-policy-agent/cert-controller v0.7.0/go.mod h1:Dkkdcr1BeSUig/62dYLqgvx3lIN0XtEikKTGW1lKSQo= github.com/pkg/errors v0.8.1/go.mod h1:bwawxfHBFNV+L2hUp1rHADufV3IMtnDRdf1r5NINEl0= github.com/pkg/errors v0.9.1 h1:FEBLx1zS214owpjy7qsBeixbURkuhQAwrK5UwLGTwt4= github.com/pkg/errors v0.9.1/go.mod h1:bwawxfHBFNV+L2hUp1rHADufV3IMtnDRdf1r5NINEl0= @@ -356,6 +358,8 @@ sigs.k8s.io/controller-runtime v0.14.6 h1:oxstGVvXGNnMvY7TAESYk+lzr6S3V5VFxQ6d92 sigs.k8s.io/controller-runtime v0.14.6/go.mod h1:WqIdsAY6JBsjfc/CqO0CORmNtoCtE4S6qbPc9s68h+0= sigs.k8s.io/jobset v0.1.3 h1:0Ewf5EKkqzr3F8VtrIwT90rnivE+Gl/8wNzHOJhlpCA= sigs.k8s.io/jobset v0.1.3/go.mod h1:KlffDELnRoNkGjaCXNvCXaCZrioCySt9syOI/lU2D7k= +sigs.k8s.io/jobset v0.2.0-devel.0.20230519200217-2f65e5633234 h1:kL0HeWQIZ2vcgfezxSTw3dIgVvceRyRZwrhRG85wxVI= +sigs.k8s.io/jobset v0.2.0-devel.0.20230519200217-2f65e5633234/go.mod h1:sNpBsYDUhLmL90ApQmyK2MxW7VBoEU0rNxQXVREaRzw= sigs.k8s.io/json v0.0.0-20221116044647-bc3834ca7abd h1:EDPBXCAspyGV4jQlpZSudPeMmr1bNJefnuqLsRAsHZo= sigs.k8s.io/json v0.0.0-20221116044647-bc3834ca7abd/go.mod h1:B8JuhiUyNFVKdsE8h686QcCxMaH6HrOAZj4vswFpcB0= sigs.k8s.io/structured-merge-diff/v4 v4.2.3 h1:PRbqxJClWWYMNV1dhaG4NsibJbArud9kFxnAMREiWFE=