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lines changed Original file line number Diff line number Diff line change @@ -14,12 +14,14 @@ before_install:
1414 - export PLANEMO_CONDA_PREFIX="$HOME/conda"
1515
1616install :
17- # html5lib (planemo dep) requires setuptools >= 18.5
18- - pip install -q flake8 planemo
19- - planemo conda_init
20- - export PATH="$PLANEMO_CONDA_PREFIX/bin:$PATH"
21- - conda create -y -q -c bioconda --name iuc_conda samtools=0.1.19 bcftools
22- - . activate iuc_conda
17+ - pip install --upgrade setuptools
18+ - pip install -q click==5.1
19+ - pip install -q planemo
20+ - planemo conda_init --conda_prefix $CONDA_PREFIX
21+ - export PATH=$CONDA_PREFIX/bin:$PATH
22+ - conda install -y -q conda=3.19.3
23+ - conda create -y -q -c bioconda --name iuc_conda numpy==1.9.2 samtools bcftools
24+ - source activate iuc_conda
2325 - planemo --version
2426 - conda --version
2527 - echo $TRAVIS_COMMIT_RANGE
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