Is 19Aug2024.tsv a typo ? I can only find 18Aug2024.txt in the repo. Another question is that this file does not have column amplification_cohort but line 115 in seg2gms.py nees amplification_cohort column for processing. Do I need to run a specify script to regenerate this arm significance file and what's the input file if there is a script to do that.
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required=False, type=str, default='../../data_tables/additional_gsm_inputs/DLBCL_broad_significance.19Aug2024.tsv') |
Is 19Aug2024.tsv a typo ? I can only find 18Aug2024.txt in the repo. Another question is that this file does not have column amplification_cohort but line 115 in seg2gms.py nees amplification_cohort column for processing. Do I need to run a specify script to regenerate this arm significance file and what's the input file if there is a script to do that.
DLBCL-Classifier/src_python/gsm_generation_scripts/seg2gsm.py
Line 29 in b5c6678