refactor: use spectraSampleIndex and use () for functions

jorainer · jorainer · commit 21314c7757b8 · 2024-06-07T10:19:02.000+02:00
- Use the `spectraSampleIndex()` function instead of `fromFile()`.
- Use `()` to indicate functions in the descriptive text to easily discriminate
  them from classes and parameters.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: xcmsTutorials
 Title: Exploring and Analyzing LC-MS data with Spectra and xcms
-Version: 1.1.0
+Version: 1.1.1
 Authors@R: c(
 	     person(given = "Johannes", family = "Rainer",
 		    email = "Johannes.Rainer@eurac.edu",
diff --git a/NEWS.md b/NEWS.md
@@ -1,5 +1,12 @@
 # xcmsTutorials 1.0
 
+## Changes in 1.1.1
+
+- Use `spectraSampleIndex()` instead of the old `fromFile()` function to get
+  sample assignments of individual spectra.
+- Add `()` to all functions in the descriptive text to discriminate functions
+  from classes or parameter names.
+
 ## Changes in 1.1.0
 
 - Release the tutorial to Zenodo.
diff --git a/vignettes/xcms-preprocessing.Rmd b/vignettes/xcms-preprocessing.Rmd
