add support for Python 3.12 (#92)

Author: kip-hart

.github/workflows/python_package.yaml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: [3.8, 3.9, '3.10', '3.11']
+        python-version: [3.8, 3.9, '3.10', '3.11', '3.12']
         os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
 
     steps:

CHANGELOG.rst

@@ -6,8 +6,12 @@ All notable changes to this project will be documented in this file.
 The format is based on `Keep a Changelog`_,
 and this project adheres to `Semantic Versioning`_.
 
-`Unreleased`_
+`1.5.9`_ - 2023-10-05
 --------------------------
+Added
+'''''
+- Support for Python 3.12
+  
 Changed
 '''''''
 - Updated version numbers of dependencies per security report.
@@ -318,7 +322,8 @@ Added
 
 .. LINKS
 
-.. _`Unreleased`: https://github.com/kip-hart/MicroStructPy/compare/v1.5.8...HEAD
+.. _`Unreleased`: https://github.com/kip-hart/MicroStructPy/compare/v1.5.9...HEAD
+.. _`1.5.9`: https://github.com/kip-hart/MicroStructPy/compare/v1.5.8...v1.5.9
 .. _`1.5.8`: https://github.com/kip-hart/MicroStructPy/compare/v1.5.7...v1.5.8
 .. _`1.5.7`: https://github.com/kip-hart/MicroStructPy/compare/v1.5.6...v1.5.7
 .. _`1.5.6`: https://github.com/kip-hart/MicroStructPy/compare/v1.5.5...v1.5.6

docs/requirements.txt

@@ -1,6 +1,6 @@
 gmsh==4.11.1
-matplotlib==3.7.2
-numpy==1.24.4
+matplotlib>=3.7.3
+numpy>=1.24.4
 pybind11==2.4.3
 setuptools>=65.5.1 
 sphinx==4.2.0

requirements.txt

@@ -1,12 +1,12 @@
 aabbtree==2.5.0
-matplotlib==3.7.2
+matplotlib>=3.7.3
 pybind11==2.4.3
 pygmsh==7.1.17
-MeshPy==2018.2.1
-numpy==1.24.4
+MeshPy==2022.1.3
+numpy>=1.24.4
 pyquaternion==0.9.5
 pyvoro-mmalahe==1.3.4
-scipy==1.10.1
+scipy>=1.10.1
 setuptools>=65.5.1 
 xmltodict==0.12.0
 tox==3.14.0

setup.py

@@ -61,6 +61,7 @@ def find_version(*fname):
         'Programming Language :: Python :: 3.9',
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
+        'Programming Language :: Python :: 3.12',
         'Topic :: Scientific/Engineering',
         'Topic :: Scientific/Engineering :: Mathematics',
         'Topic :: Scientific/Engineering :: Physics'

src/microstructpy/__init__.py

@@ -4,4 +4,4 @@
 import microstructpy.seeding
 import microstructpy.verification
 
-__version__ = '1.5.8'
+__version__ = '1.5.9'

src/microstructpy/examples/uniform_seeding.py

@@ -61,7 +61,7 @@
 norm = mpl.colors.Normalize(vmin=min_area, vmax=max_area)
 sm = plt.cm.ScalarMappable(cmap=cmap, norm=norm)
 sm.set_array([])
-cb = plt.colorbar(sm, ticks=[min_area, std_area, max_area],
+cb = plt.colorbar(sm, ticks=[min_area, std_area, max_area], ax=plt.gca(),
                   orientation='horizontal', fraction=0.046, pad=0.08)
 cb.set_label('Cell Area')
 

src/microstructpy/geometry/ellipse.py

@@ -569,7 +569,7 @@ def plot(self, **kwargs):
 
         """  # NOQA: E501
         p = patches.Ellipse(self.center, 2 * self.a, 2 * self.b,
-                            self.angle_deg, **kwargs)
+                            angle=self.angle_deg, **kwargs)
         plt.gca().add_patch(p)
 
     # ----------------------------------------------------------------------- #

src/microstructpy/geometry/rectangle.py

@@ -396,7 +396,7 @@ def plot(self, **kwargs):
         w = self.length
         h = self.width
         ang = self.angle
-        c = patches.Rectangle(pt, w, h, ang, **kwargs)
+        c = patches.Rectangle(pt, w, h, angle=ang, **kwargs)
         plt.gca().add_patch(c)
 
 

src/microstructpy/seeding/seedlist.py

@@ -575,7 +575,7 @@ def plot(self, index_by='seed', material=[], loc=0, **kwargs):
             rects = [Rectangle(xy=xyi, width=wi, height=hi, angle=ai) for
                      xyi, wi, hi, ai in zip(rect_data['xy'], rect_data['w'],
                      rect_data['h'], rect_data['angle'])]
-            rc = collections.PatchCollection(rects, False, **rect_kwargs)
+            rc = collections.PatchCollection(rects, match_original=False, **rect_kwargs)
             ax.add_collection(rc)
 
             # Plot Polygons
@@ -1161,7 +1161,7 @@ def _plot_2d(ax, seeds, seed_args):
 
     # Plot Rectangles
     rects = [Rectangle(**rect_inps) for rect_inps in rect_data]
-    rc = collections.PatchCollection(rects, False, **rect_kwargs)
+    rc = collections.PatchCollection(rects, match_original=False, **rect_kwargs)
     ax.add_collection(rc)
 
     ax.autoscale_view()