Publish mmstudio/latest

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deprecated-list.html

@@ -186,13 +186,13 @@ <h2 title="Contents">Contents</h2>
 </td>
 </tr>
 <tr class="altColor">
-<td class="colOne"><a href="org/micromanager/acquisition/ChannelSpec.html#channelGroup">org.micromanager.acquisition.ChannelSpec.channelGroup</a>
-<div class="block"><span class="deprecationComment">Use Builder and getters instead</span></div>
+<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#channelGroup">org.micromanager.acquisition.SequenceSettings.channelGroup</a>
+<div class="block"><span class="deprecationComment">use Builder and channelGroup() instead</span></div>
 </td>
 </tr>
 <tr class="rowColor">
-<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#channelGroup">org.micromanager.acquisition.SequenceSettings.channelGroup</a>
-<div class="block"><span class="deprecationComment">use Builder and channelGroup() instead</span></div>
+<td class="colOne"><a href="org/micromanager/acquisition/ChannelSpec.html#channelGroup">org.micromanager.acquisition.ChannelSpec.channelGroup</a>
+<div class="block"><span class="deprecationComment">Use Builder and getters instead</span></div>
 </td>
 </tr>
 <tr class="altColor">
@@ -407,11 +407,9 @@ <h2 title="Contents">Contents</h2>
 <td class="colOne"><a href="org/micromanager/PropertyMap.html#copy--">org.micromanager.PropertyMap.copy()</a></td>
 </tr>
 <tr class="altColor">
-<td class="colOne"><a href="org/micromanager/data/Metadata.html#copy--">org.micromanager.data.Metadata.copy()</a>
-<div class="block"><span class="deprecationComment">Use the appropriate of the following:
-     <a href="org/micromanager/data/Metadata.html#copyBuilderPreservingUUID--"><code>Metadata.copyBuilderPreservingUUID()</code></a>, <a href="org/micromanager/data/Metadata.html#copyBuilderWithNewUUID--"><code>Metadata.copyBuilderWithNewUUID()</code></a>,
-     <a href="org/micromanager/data/Metadata.html#copyBuilderRemovingUUID--"><code>Metadata.copyBuilderRemovingUUID()</code></a>. This method is equivalent to
-     <code>copyBuilderPreservingUUID</code>.</span></div>
+<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#copy--">org.micromanager.acquisition.SequenceSettings.copy()</a>
+<div class="block"><span class="deprecationComment">When used correctly, SequenceSettings are immutable.
+     If you really need a copy, use copyBuilder().build();</span></div>
 </td>
 </tr>
 <tr class="rowColor">
@@ -425,13 +423,15 @@ <h2 title="Contents">Contents</h2>
 </td>
 </tr>
 <tr class="rowColor">
-<td class="colOne"><a href="org/micromanager/display/DisplaySettings.html#copy--">org.micromanager.display.DisplaySettings.copy()</a></td>
+<td class="colOne"><a href="org/micromanager/data/Metadata.html#copy--">org.micromanager.data.Metadata.copy()</a>
+<div class="block"><span class="deprecationComment">Use the appropriate of the following:
+     <a href="org/micromanager/data/Metadata.html#copyBuilderPreservingUUID--"><code>Metadata.copyBuilderPreservingUUID()</code></a>, <a href="org/micromanager/data/Metadata.html#copyBuilderWithNewUUID--"><code>Metadata.copyBuilderWithNewUUID()</code></a>,
+     <a href="org/micromanager/data/Metadata.html#copyBuilderRemovingUUID--"><code>Metadata.copyBuilderRemovingUUID()</code></a>. This method is equivalent to
+     <code>copyBuilderPreservingUUID</code>.</span></div>
+</td>
 </tr>
 <tr class="altColor">
-<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#copy--">org.micromanager.acquisition.SequenceSettings.copy()</a>
-<div class="block"><span class="deprecationComment">When used correctly, SequenceSettings are immutable.
-     If you really need a copy, use copyBuilder().build();</span></div>
-</td>
+<td class="colOne"><a href="org/micromanager/display/DisplaySettings.html#copy--">org.micromanager.display.DisplaySettings.copy()</a></td>
 </tr>
 <tr class="rowColor">
 <td class="colOne"><a href="org/micromanager/data/DataManager.html#createCoords-java.lang.String-">org.micromanager.data.DataManager.createCoords(String)</a>

org/micromanager/class-use/PropertyMap.html

@@ -356,14 +356,14 @@ <h3>Uses of <a href="../../../org/micromanager/PropertyMap.html" title="interfac
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">Metadata.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/Metadata.html#getUserData--">getUserData</a></span>()</code>
-<div class="block">Arbitrary additional metadata added by third-party code.</div>
+<td class="colLast"><span class="typeNameLabel">SummaryMetadata.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/SummaryMetadata.html#getUserData--">getUserData</a></span>()</code>
+<div class="block">Any general-purpose user meta data.</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">SummaryMetadata.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/SummaryMetadata.html#getUserData--">getUserData</a></span>()</code>
-<div class="block">Any general-purpose user meta data.</div>
+<td class="colLast"><span class="typeNameLabel">Metadata.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/Metadata.html#getUserData--">getUserData</a></span>()</code>
+<div class="block">Arbitrary additional metadata added by third-party code.</div>
 </td>
 </tr>
 <tr class="altColor">
@@ -431,24 +431,24 @@ <h3>Uses of <a href="../../../org/micromanager/PropertyMap.html" title="interfac
 </td>
 </tr>
 <tr class="rowColor">
-<td class="colFirst"><code><a href="../../../org/micromanager/data/Metadata.Builder.html" title="interface in org.micromanager.data">Metadata.Builder</a></code></td>
-<td class="colLast"><span class="typeNameLabel">Metadata.Builder.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/Metadata.Builder.html#userData-org.micromanager.PropertyMap-">userData</a></span>(<a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;userData)</code>
-<div class="block">Add user-defined data.</div>
-</td>
+<td class="colFirst"><code><a href="../../../org/micromanager/data/SummaryMetadata.Builder.html" title="interface in org.micromanager.data">SummaryMetadata.Builder</a></code></td>
+<td class="colLast"><span class="typeNameLabel">SummaryMetadata.Builder.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/SummaryMetadata.Builder.html#userData-org.micromanager.PropertyMap-">userData</a></span>(<a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;userData)</code>&nbsp;</td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code><a href="../../../org/micromanager/data/Metadata.MetadataBuilder.html" title="interface in org.micromanager.data">Metadata.MetadataBuilder</a></code></td>
-<td class="colLast"><span class="typeNameLabel">Metadata.MetadataBuilder.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/Metadata.MetadataBuilder.html#userData-org.micromanager.PropertyMap-">userData</a></span>(<a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;userData)</code>
+<td class="colFirst"><code><a href="../../../org/micromanager/data/SummaryMetadata.SummaryMetadataBuilder.html" title="interface in org.micromanager.data">SummaryMetadata.SummaryMetadataBuilder</a></code></td>
+<td class="colLast"><span class="typeNameLabel">SummaryMetadata.SummaryMetadataBuilder.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/SummaryMetadata.SummaryMetadataBuilder.html#userData-org.micromanager.PropertyMap-">userData</a></span>(<a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;userData)</code>
 <div class="block"><span class="deprecatedLabel">Deprecated.</span>&nbsp;</div>
 &nbsp;</td>
 </tr>
 <tr class="rowColor">
-<td class="colFirst"><code><a href="../../../org/micromanager/data/SummaryMetadata.Builder.html" title="interface in org.micromanager.data">SummaryMetadata.Builder</a></code></td>
-<td class="colLast"><span class="typeNameLabel">SummaryMetadata.Builder.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/SummaryMetadata.Builder.html#userData-org.micromanager.PropertyMap-">userData</a></span>(<a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;userData)</code>&nbsp;</td>
+<td class="colFirst"><code><a href="../../../org/micromanager/data/Metadata.Builder.html" title="interface in org.micromanager.data">Metadata.Builder</a></code></td>
+<td class="colLast"><span class="typeNameLabel">Metadata.Builder.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/Metadata.Builder.html#userData-org.micromanager.PropertyMap-">userData</a></span>(<a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;userData)</code>
+<div class="block">Add user-defined data.</div>
+</td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code><a href="../../../org/micromanager/data/SummaryMetadata.SummaryMetadataBuilder.html" title="interface in org.micromanager.data">SummaryMetadata.SummaryMetadataBuilder</a></code></td>
-<td class="colLast"><span class="typeNameLabel">SummaryMetadata.SummaryMetadataBuilder.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/SummaryMetadata.SummaryMetadataBuilder.html#userData-org.micromanager.PropertyMap-">userData</a></span>(<a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;userData)</code>
+<td class="colFirst"><code><a href="../../../org/micromanager/data/Metadata.MetadataBuilder.html" title="interface in org.micromanager.data">Metadata.MetadataBuilder</a></code></td>
+<td class="colLast"><span class="typeNameLabel">Metadata.MetadataBuilder.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/data/Metadata.MetadataBuilder.html#userData-org.micromanager.PropertyMap-">userData</a></span>(<a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;userData)</code>
 <div class="block"><span class="deprecatedLabel">Deprecated.</span>&nbsp;</div>
 &nbsp;</td>
 </tr>

org/micromanager/data/class-use/Coords.html

@@ -252,14 +252,14 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Coords.html" title="inter
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code>void</code></td>
-<td class="colLast"><span class="typeNameLabel">RewritableStorage.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/RewritableStorage.html#deleteImage-org.micromanager.data.Coords-">deleteImage</a></span>(<a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a>&nbsp;coords)</code>
-<div class="block">Delete an image from the Storage.</div>
+<td class="colLast"><span class="typeNameLabel">RewritableDatastore.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/RewritableDatastore.html#deleteImage-org.micromanager.data.Coords-">deleteImage</a></span>(<a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a>&nbsp;coords)</code>
+<div class="block">Delete an image from the Datastore.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code>void</code></td>
-<td class="colLast"><span class="typeNameLabel">RewritableDatastore.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/RewritableDatastore.html#deleteImage-org.micromanager.data.Coords-">deleteImage</a></span>(<a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a>&nbsp;coords)</code>
-<div class="block">Delete an image from the Datastore.</div>
+<td class="colLast"><span class="typeNameLabel">RewritableStorage.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/RewritableStorage.html#deleteImage-org.micromanager.data.Coords-">deleteImage</a></span>(<a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a>&nbsp;coords)</code>
+<div class="block">Delete an image from the Storage.</div>
 </td>
 </tr>
 <tr class="rowColor">
@@ -390,14 +390,14 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Coords.html" title="inter
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a></code></td>
-<td class="colLast"><span class="typeNameLabel">AbstractDataViewer.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/AbstractDataViewer.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
-<div class="block">Implements <code>getDisplayPosition</code>.</div>
+<td class="colLast"><span class="typeNameLabel">DisplayPositionChangedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/DisplayPositionChangedEvent.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
+<div class="block">returns the new display position.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a></code></td>
-<td class="colLast"><span class="typeNameLabel">DisplayPositionChangedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/DisplayPositionChangedEvent.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
-<div class="block">returns the new display position.</div>
+<td class="colLast"><span class="typeNameLabel">AbstractDataViewer.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/AbstractDataViewer.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
+<div class="block">Implements <code>getDisplayPosition</code>.</div>
 </td>
 </tr>
 <tr class="rowColor">

org/micromanager/data/class-use/Datastore.html

@@ -274,22 +274,22 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Datastore.html" title="in
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">ImageOverwrittenEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageOverwrittenEvent.html#getDatastore--">getDatastore</a></span>()</code>
+<td class="colLast"><span class="typeNameLabel">ImageDeletedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageDeletedEvent.html#getDatastore--">getDatastore</a></span>()</code>
 <div class="block">Provides the Datastore this image was added to; potentially useful for
  code that listens to events from multiple Datastores.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">Pipeline.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/Pipeline.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Get the output Datastore for this Pipeline.</div>
+<td class="colLast"><span class="typeNameLabel">ImageOverwrittenEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageOverwrittenEvent.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Provides the Datastore this image was added to; potentially useful for
+ code that listens to events from multiple Datastores.</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">ImageDeletedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageDeletedEvent.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Provides the Datastore this image was added to; potentially useful for
- code that listens to events from multiple Datastores.</div>
+<td class="colLast"><span class="typeNameLabel">Pipeline.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/Pipeline.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Get the output Datastore for this Pipeline.</div>
 </td>
 </tr>
 <tr class="altColor">