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nevromenevrome
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Update the schemas
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5 files changed

+21
-21
lines changed

5 files changed

+21
-21
lines changed

‎c14dating-table-schema.json‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
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"titles" : "C14LabID",
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"dc:description" : "Lab ID of the date",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "[a-zA-Z0-9_\\-]+"
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},
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"propertyUrl" : "dc:identifier"
@@ -15,7 +15,7 @@
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"titles" : "IndividualID",
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"dc:description" : "Foreign Key into the Individuals-Table. Gives the ID of the individual for which the date holds",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "[a-zA-Z0-9_\\-]+"
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},
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#individualReference"

‎dnaSequencing-table-schema.json‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
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"titles" : "SequencingLabID",
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"dc:description" : "ID of the lab generating the sequencing data",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "[a-zA-Z0-9_\\-]+"
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},
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"propertyUrl" : "dc:identifier",
@@ -16,7 +16,7 @@
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"titles" : "IndividualID",
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"dc:description" : "Foreign Key into the Individuals-Table. Gives the ID of the individual that is analysed.",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "[a-zA-Z0-9_\\-]+"
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},
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#individualReference",
@@ -33,7 +33,7 @@
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"titles" : "SkeletalElement",
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"dc:description" : "Name of the skeletal element analysed",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "[Tooth|Petrous|OtherBone|OtherTissue]"
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},
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#tissueType",

‎genotyping-table-schema.json‎

Lines changed: 12 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
66
"titles" : "GenotypingID",
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"dc:description" : "ID of a particular genotyping pulldown for a specific sample",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "[a-zA-Z0-9_\\-]+"
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},
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"propertyUrl" : "dc:identifier",
@@ -16,7 +16,7 @@
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"titles" : "SequencingLabID",
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"dc:description" : "Foreign Key into the sequencing table",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "[a-zA-Z0-9_\\-]+"
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},
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#seqReference",
@@ -26,7 +26,7 @@
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"titles" : "GenotypingSnpSetName",
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"dc:description" : "Standardized Name of the SNP set (can be \"1240K\", \"1000_Genomes\" or \"Other\"",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "1240K|1000_Genomes|Other"
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},
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#genotypingSnpSetName",
@@ -35,22 +35,22 @@
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"name" : "GenotypingPositionsFile",
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"titles" : "GenotypingPositionsFile",
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"dc:description" : "URL or filename of the positions file",
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"datatype" : "xsd:anyURI",
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"datatype" : "anyURI",
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#genotypingPositionsFile",
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"required" : true
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}, {
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"name" : "GenotypingGenotypeFile",
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"titles" : "GenotypingGenotypeFile",
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"dc:description" : "URL or filename of the genotype matrix file",
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"datatype" : "xsd:anyURI",
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"datatype" : "anyURI",
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#genotypingGenotypeFile",
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"required" : true
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}, {
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"name" : "GenotypingFileFormat",
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"titles" : "GenotypingFileFormat",
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"dc:description" : "Format of the genotyping file. Can be \"EIGENSTRAT\" or \"PLINK\"",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "EIGENSTRAT|PLINK"
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},
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#genotypingFileFormat",
@@ -59,15 +59,15 @@
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"name" : "GenotypingColumnPosition",
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"titles" : "GenotypingColumnPosition",
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"dc:description" : "1-based Column position of the sample in the genotype matrix.",
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"datatype" : "xsd:nonNegativeInteger",
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"datatype" : "nonNegativeInteger",
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#genotypingColumnPosition",
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"required" : true
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}, {
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"name" : "GenotypingMethod",
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"titles" : "GenotypingMethod",
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"dc:description" : "Method of the genotyping. Can be \"RandomReadSampling\", \"MajorityReadSampling\", \"DiploidModelBased\" or \"Other\"",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "RandomReadSampling|MajorityReadSampling|DiploidModelBased|Other"
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},
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#genotypingMethod",
@@ -76,25 +76,25 @@
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"name" : "GenotypingTool",
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"titles" : "GenotypingTool",
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"dc:description" : "Tool used for genotyping, such as \"pileupCaller\" or \"GATK\"",
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"datatype" : "xsd:string",
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"datatype" : "string",
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#genotypingTool"
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}, {
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"name" : "NrSnpsTotal",
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"titles": "NrSnpsTotal",
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"dc:description": "Total nr of SNPs attempted to call (= nr of SNPs in the file specified under GenotypingPositionsFile)",
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"datatype" : "xsd:nonNegativeInteger",
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"datatype" : "nonNegativeInteger",
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#nrSnpsTotal"
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}, {
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"name" : "NrSnpsCalled",
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"titles": "NrSnpsCalled",
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"dc:description": "Total nr of SNPs called (=non-missing) for this individual",
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"datatype" : "xsd:nonNegativeInteger",
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"datatype" : "nonNegativeInteger",
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#nrSnpsCalled"
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}, {
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"name" : "GenotypingNote",
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"titles" : "GenotypingNote",
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"dc:description" : "Optional Note for genotyping",
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"datatype" : "xsd:string",
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"datatype" : "string",
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#genotypingNote"
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}, {
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"name" : "Source",

‎individualsTable-schema.json‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
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"titles" : "IndividualID",
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"dc:description" : "Unique identifier for an individual. Can be alphanumeric and include - and _",
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"datatype" : {
9-
"base" : "xsd:string",
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"base" : "string",
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"format" : "[a-zA-Z0-9_\\-]+"
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},
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"propertyUrl" : "dc:identifier",
@@ -16,7 +16,7 @@
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"titles" : "SiteID",
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"dc:description" : "Foreign Key into the Sites-Table. Gives the ID of the site from which the individual is.",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "[a-zA-Z0-9_\\-]+"
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},
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"propertyUrl" : "http://w3id.org/poseidon/terms.rdf.jsonld#siteReference",

‎sitesTable-schema.json‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -6,7 +6,7 @@
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"titles" : "SiteID",
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"dc:description" : "The ID of the site. Can be any alphanumeric string including - and _",
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"datatype" : {
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"base" : "xsd:string",
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"base" : "string",
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"format" : "[a-zA-Z0-9_\\-]+"
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},
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"propertyUrl" : "dc:identifier",
@@ -15,7 +15,7 @@
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"name" : "SiteName",
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"titles" : "SiteName",
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"dc:description" : "The name of the site",
18-
"datatype" : "xsd:string",
18+
"datatype" : "string",
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"propertyUrl" : "schema:name",
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"required" : true
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}, {

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