diff --git a/experiments/temporal-models/temporal-model-leaderboard/dvc.yaml b/experiments/temporal-models/temporal-model-leaderboard/dvc.yaml index 4f01d5ac..980392e1 100644 --- a/experiments/temporal-models/temporal-model-leaderboard/dvc.yaml +++ b/experiments/temporal-models/temporal-model-leaderboard/dvc.yaml @@ -79,6 +79,26 @@ stages: outs: - data/07_model_output/bbox-tube-temporal-gru-convnext-finetune + # Best combination from the tube-multiscale-fusion ablation sweep + # (tubelet spatial x transformer temporal = the dinov2_multiscale default: + # top F1, perfect recall, cheapest — see that experiment's + # COMBINED_VARIATIONS.md). + evaluate_tube_multiscale_fusion_dinov2_multiscale: + cmd: >- + uv run python scripts/evaluate.py + --model-name tube-multiscale-fusion-dinov2-multiscale + --model-type tube-multiscale-fusion + --model-package data/01_raw/models/tube-multiscale-fusion-dinov2-multiscale.zip + --test-dir data/01_raw/sequential_test/test + --output-dir data/07_model_output/tube-multiscale-fusion-dinov2-multiscale + deps: + - scripts/evaluate.py + - src/temporal_model_leaderboard + - data/01_raw/sequential_test + - data/01_raw/models/tube-multiscale-fusion-dinov2-multiscale.zip + outs: + - data/07_model_output/tube-multiscale-fusion-dinov2-multiscale + leaderboard: cmd: >- uv run python scripts/leaderboard.py diff --git a/experiments/temporal-models/temporal-model-leaderboard/pyproject.toml b/experiments/temporal-models/temporal-model-leaderboard/pyproject.toml index dd88a13f..2b047937 100644 --- a/experiments/temporal-models/temporal-model-leaderboard/pyproject.toml +++ b/experiments/temporal-models/temporal-model-leaderboard/pyproject.toml @@ -9,6 +9,7 @@ dependencies = [ "mtb-change-detection", "pyro-detector-baseline", "bbox-tube-temporal", + "tube-multiscale-fusion", "tqdm>=4.67.3", ] @@ -18,6 +19,7 @@ tracking-fsm-baseline = { path = "../tracking-fsm-baseline" } mtb-change-detection = { path = "../mtb-change-detection" } pyro-detector-baseline = { path = "../pyro-detector-baseline" } bbox-tube-temporal = { path = "../bbox-tube-temporal" } +tube-multiscale-fusion = { path = "../tube-multiscale-fusion" } [dependency-groups] dev = [ diff --git a/experiments/temporal-models/temporal-model-leaderboard/src/temporal_model_leaderboard/registry.py b/experiments/temporal-models/temporal-model-leaderboard/src/temporal_model_leaderboard/registry.py index 36e7123c..3375c18d 100644 --- a/experiments/temporal-models/temporal-model-leaderboard/src/temporal_model_leaderboard/registry.py +++ b/experiments/temporal-models/temporal-model-leaderboard/src/temporal_model_leaderboard/registry.py @@ -26,6 +26,10 @@ "bbox_tube_temporal.model", "BboxTubeTemporalModel", ), + "tube-multiscale-fusion": ( + "tube_multiscale_fusion.model", + "TubeMultiscaleFusionModel", + ), } diff --git a/experiments/temporal-models/temporal-model-leaderboard/uv.lock b/experiments/temporal-models/temporal-model-leaderboard/uv.lock index 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new file mode 100644 index 00000000..528f30c7 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/.dvc/.gitignore @@ -0,0 +1,3 @@ +/config.local +/tmp +/cache diff --git a/experiments/temporal-models/tube-multiscale-fusion/.dvc/config b/experiments/temporal-models/tube-multiscale-fusion/.dvc/config new file mode 100644 index 00000000..bc5f2378 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/.dvc/config @@ -0,0 +1,5 @@ +[core] + remote = s3remote + analytics = false +['remote "s3remote"'] + url = s3://pyro-vision-rd/dvc/experiments/tube-multiscale-fusion/ diff --git a/experiments/temporal-models/tube-multiscale-fusion/.dvcignore b/experiments/temporal-models/tube-multiscale-fusion/.dvcignore new file mode 100644 index 00000000..51973055 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/.dvcignore @@ -0,0 +1,3 @@ +# Add patterns of files dvc should ignore, which could improve +# the performance. Learn more at +# https://dvc.org/doc/user-guide/dvcignore diff --git a/experiments/temporal-models/tube-multiscale-fusion/.gitattributes b/experiments/temporal-models/tube-multiscale-fusion/.gitattributes new file mode 100644 index 00000000..305a9b04 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/.gitattributes @@ -0,0 +1,2 @@ +*.ipynb filter=nbstripout +*.ipynb diff=ipynb diff --git a/experiments/temporal-models/tube-multiscale-fusion/.gitignore b/experiments/temporal-models/tube-multiscale-fusion/.gitignore new file mode 100644 index 00000000..34678175 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/.gitignore @@ -0,0 +1,8 @@ +__pycache__/ +*.pyc +.venv/ +.ipynb_checkpoints/ +.pytest_cache/ +.ruff_cache/ +logs/ +datasets_full/ diff --git a/experiments/temporal-models/tube-multiscale-fusion/.python-version b/experiments/temporal-models/tube-multiscale-fusion/.python-version new file mode 100644 index 00000000..2c073331 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/.python-version @@ -0,0 +1 @@ +3.11 diff --git a/experiments/temporal-models/tube-multiscale-fusion/ABLATIONS.md b/experiments/temporal-models/tube-multiscale-fusion/ABLATIONS.md new file mode 100644 index 00000000..d1a3886d --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/ABLATIONS.md @@ -0,0 +1,119 @@ +# Ablation study — tube-multiscale-fusion + +This study decomposes the full two-branch model by removing or simplifying one +component at a time, to attribute the model's performance to its parts. All +runs use the **same data, seed (42), augmentation, training schedule, and tube +geometry** (2×2 grid of 112×112 cells × 4-frame windows at stride 2 → 28 tubes +per sequence) as the default model; only the named component changes. Metrics +are on the **val split (280 tubes: 135 smoke / 145 fp)**, single seed. + +## Variants + +| # | Variant | What changed vs. full model | +|---|---------|------------------------------| +| 0 | **Full** | Global DINOv2 sequence branch + local tube branch + cross-attention fusion (self-attn over tubes, global=query). | +| 1 | **− temporal** (`no_temporal`) | **Global branch removed.** Local branch + fusion kept; the fusion's global query is replaced by a learnable token. | +| 2 | **− spatial** (`no_spatial`) | **Local branch removed.** Global branch only → MLP head; no fusion. | +| 3 | **fusion → weighted-mean** (`weighted_mean`) | Both branches kept; **cross-attention fusion replaced** by a learned weighted mean over tubes + a learned gate between the two branches (no attention). | + +Each variant is a clean, single-component change: the kept modules are +byte-for-byte identical to the full model. + +## Results (val, 280 tubes) + +### Classification quality + +| Variant | F1 | Accuracy | Precision | Recall | PR-AUC | FP | FN | +|---------|---:|---:|---:|---:|---:|---:|---:| +| **Full** | **0.9783** | 0.9786 | 0.9574 | **1.0000** | 0.9936 | 6 | 0 | +| fusion → weighted-mean | 0.9779 | 0.9786 | **0.9708** | 0.9852 | **0.9952** | **4** | 2 | +| − spatial (global only) | 0.9708 | 0.9714 | 0.9568 | 0.9852 | 0.9901 | 6 | 2 | +| − temporal (local only) | 0.8716 | 0.8643 | 0.8012 | 0.9556 | 0.9019 | 32 | 6 | + +### Operating point & compute + +| Variant | Recall@FPR=1% | @5% | @10% | Params | Trainable | GFLOPs/seq | Latency (ms/seq)¹ | +|---------|---:|---:|---:|---:|---:|---:|---:| +| **Full** | **0.874** | **1.000** | **1.000** | 36.4 M | 16.6 M | 226.5 | 18.9 | +| fusion → weighted-mean | 0.837 | 0.993 | 1.000 | 29.3 M | 9.5 M | 226.3 | 24.1 | +| − spatial (global only) | 0.770 | 0.993 | 0.993 | 25.3 M | 5.4 M | 196.1 | 20.6 | +| − temporal (local only) | 0.193 | 0.563 | 0.748 | 11.3 M | 11.3 M | 30.5 | 6.2 | + +¹ Batch-1, single RTX 4090, one consistent measurement pass. Batch-1 latency is +dominated by kernel-launch overhead and is *not* strictly proportional to FLOPs +(hence `no_spatial` ≈ `full` despite fewer FLOPs); treat GFLOPs as the reliable +compute metric. + +## Findings + +### 1. The temporal (global) module is by far the most important component. + +Removing it (`no_temporal`) is **catastrophic**: F1 collapses 0.978 → 0.872, +precision 0.957 → 0.801 (false positives jump 6 → 32), and recall at a strict +1 % FPR falls off a cliff, 0.874 → 0.193. Recall holds up best (1.000 → 0.956), +so the local branch alone still *finds* smoke — it simply cannot *reject* +slow-moving look-alikes (cloud, fog, haze) without the long-range sequence +context. The global branch is the workhorse; everything else refines it. + +### 2. The spatial (local) module adds a modest but real gain — concentrated at the strict operating point. + +Global-only (`no_spatial`) is already strong (F1 0.971), so the local branch +buys only ~0.7 F1 on average. But its value shows up where it matters for +deployment: **recall @ 1 % FPR improves 0.770 → 0.874** and PR-AUC 0.990 → +0.994 when the local branch is added back. The high-frequency turbulence cue +from the tubes sharpens the model's confidence precisely in the +low-false-alarm regime — consistent with the design rationale that local motion +detail disambiguates the hardest cases. + +### 3. The cross-attention fusion is **not** clearly better than a simple weighted mean. + +Replacing the attention-based fusion with a learned weighted mean +(`weighted_mean`) **matches the full model**: F1 0.9779 vs 0.9783 (a one-tube +difference, within noise), with *higher* precision (0.971 vs 0.957, 4 FP vs 6) +and *higher* PR-AUC (0.9952 vs 0.9936). It trails the full model only at the +very strictest 1 % FPR point (0.837 vs 0.874). + +The takeaway: on this dataset the gain comes from **having both branches**, not +from the attention mechanism in the fusion step. Since the fusion is a +negligible fraction of compute (both variants are ~226 GFLOPs — the cost is +the 16 DINOv2 passes), the cross-attention buys a small edge at the extreme +operating point for ~7 M extra parameters. The weighted-mean fusion is a strong +**simplification candidate** if that extreme-FPR margin is not required. + +### Summary + +``` +contribution to val F1 (full = 0.978): + temporal/global module : +0.106 (0.872 → 0.978) ← dominant + spatial/local module : +0.007 (0.971 → 0.978) ← modest, helps low-FPR + cross-attn over w-mean : +0.000 (0.978 → 0.978) ← negligible on this val set +``` + +The architecture's accuracy is driven overwhelmingly by the **global temporal +context**, with the **local tube branch** adding a small but deployment-relevant +gain at low false-alarm rates. The **attention-based fusion** is the most +expendable piece: a learned weighted mean is statistically indistinguishable +here and even slightly more precise. + +## Caveats + +- **Single seed, small val set (280 tubes).** Differences under ~0.005 F1 + (e.g. full vs. weighted-mean) are within run-to-run noise; the temporal and + spatial effects are large enough to be robust, but the fusion comparison + should be confirmed with multiple seeds before acting on it. +- All variants share the default 2×2 tube geometry; interactions between the + fusion choice and finer/denser tube geometries were not explored. + +## Reproduce + +```bash +# Full model +uv run dvc repro train_dinov2_multiscale evaluate_dinov2_multiscale +# Ablations +uv run dvc repro train_ablation_no_temporal evaluate_ablation_no_temporal +uv run dvc repro train_ablation_no_spatial evaluate_ablation_no_spatial +uv run dvc repro train_ablation_weighted_mean evaluate_ablation_weighted_mean +``` + +Per-variant metrics, confusion matrices, and PR/ROC curves are written to +`data/08_reporting//{train,val}/`. diff --git a/experiments/temporal-models/tube-multiscale-fusion/COMBINED_VARIATIONS.md b/experiments/temporal-models/tube-multiscale-fusion/COMBINED_VARIATIONS.md new file mode 100644 index 00000000..eab9ff7c --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/COMBINED_VARIATIONS.md @@ -0,0 +1,106 @@ +# Combined spatial × temporal variations — tube-multiscale-fusion + +The [spatial](SPATIAL_COMPARISON.md) and [temporal](TEMPORAL_COMPARISON.md) +comparisons each varied one module *in isolation* (local-only / global-only). +This study puts both modules back together and sweeps the **cartesian product** +of the strongest candidates **inside the full two-branch model** (global DINOv2 +branch + local tube branch + cross-attention fusion + head): + +- **spatial** (local per-tube encoder): `tubelet transformer`, `ViViT`, `3D ResNet` +- **temporal** (global aggregator): `transformer`, `LSTM` + += 6 full models. Same data, seed (42), schedule, augmentation, and 2×2 tube +geometry; only the two module kinds change. `tubelet × transformer` is the +production default (= `dinov2_multiscale`). Metrics on the **val split +(280 tubes)**, single seed. + +## Results (val, 280 tubes) + +| Spatial | Temporal | F1 | Acc | Prec | Recall | PR-AUC | FP | FN | Params | GFLOPs | ms/seq¹ | R@FPR=1% | @5% | +|---------|----------|---:|---:|---:|---:|---:|---:|---:|---:|---:|---:|---:|---:| +| **tubelet** | **transformer** (default) | **0.9783** | 0.9786 | 0.9574 | **1.0000** | 0.9936 | 6 | **0** | 36.4 M | 226.5 | 10.8 | 0.874 | **1.000** | +| **resnet3d** | **LSTM** | 0.9779 | 0.9786 | **0.9708** | 0.9852 | **0.9952** | **4** | 2 | 63.4 M | 800.1 | 23.1 | 0.911 | 0.993 | +| vivit | LSTM | 0.9708 | 0.9714 | 0.9568 | 0.9852 | 0.9911 | 6 | 2 | 37.6 M | 250.9 | 12.8 | **0.933** | 0.993 | +| resnet3d | transformer | 0.9675 | 0.9679 | 0.9437 | 0.9926 | 0.9946 | 8 | 1 | 65.7 M | 800.2 | 22.9 | 0.867 | 0.993 | +| vivit | transformer | 0.9675 | 0.9679 | 0.9437 | 0.9926 | 0.9931 | 8 | 1 | 40.0 M | 251.0 | 12.6 | 0.793 | 0.993 | +| tubelet | LSTM | 0.9673 | 0.9679 | 0.9500 | 0.9852 | 0.9950 | 7 | 2 | 34.1 M | 226.4 | 10.9 | 0.874 | 0.985 | + +(sorted by F1) ¹ Batch-1, single RTX 4090. + +## Findings + +### 1. In the full model, the spatial × temporal choice barely moves the needle. + +All six combinations land within **F1 0.967–0.978 (~1.1 points)** — essentially +a tie on this val set. This is the key result and it contrasts sharply with the +isolated [spatial study](SPATIAL_COMPARISON.md), where the encoder choice spanned +9 F1 points (0.85–0.94). The explanation is the [ablation](ABLATIONS.md) finding: +once the strong **global DINOv2 branch** is present, it carries the prediction +and the local branch contributes only ~0.7 F1. So swapping the local encoder +(tubelet → ViViT → 3D ResNet) or the aggregator (transformer ↔ LSTM) only +reshuffles that small residual — within noise. **The architecture is robust to +these choices; none of the expensive upgrades is worth it in the full model.** + +### 2. The cheapest model is also (statistically) the best. + +`tubelet × transformer` — the current default and the **least expensive** +(226 GFLOPs, 10.8 ms, 36 M params) — has the top F1 (0.978), perfect recall +(0 missed smokes), and R@5%FPR = 1.000. Nothing beats it by more than noise, and +everything else costs more. + +### 3. `resnet3d × LSTM` is the only combo that rivals it — at 3.5× the compute. + +It edges the default on **precision (0.971 vs 0.957, 4 FP vs 6)** and **PR-AUC +(0.9952)**, i.e. slightly cleaner false-alarm behaviour. But it costs **800 +GFLOPs (3.5×) and 23 ms (2.1×)** for a difference well inside single-seed noise. +Not a worthwhile trade unless false positives are extremely costly *and* the +compute budget is large. + +### 4. Temporal aggregator: LSTM ≈ transformer; spatial encoder: pretraining helps precision, not F1. + +- LSTM vs transformer is a wash across spatial backbones (LSTM wins for + resnet3d/vivit, transformer wins for tubelet — all within noise), and the + aggregator is compute-negligible (LSTM is marginally smaller). +- The pretrained `3D ResNet` spatial encoder shows up only as a small + precision/PR-AUC edge (best with LSTM), **not** as an F1 win — consistent with + the local branch being a minor contributor here. Its standalone dominance in + the [spatial study](SPATIAL_COMPARISON.md) does **not** transfer to the full + model, because the global branch already supplies most of the signal. + +### Recommendation + +**Keep the current default, `tubelet × transformer`.** It is the cheapest and is +statistically the best on this val set (top F1, perfect recall). If a deployment +is acutely false-alarm-sensitive and compute is not a constraint, +`resnet3d × LSTM` offers marginally higher precision/PR-AUC at 3.5× the FLOPs — +otherwise it is not justified. `vivit × LSTM` is a middle option (best +recall@1%FPR, +10% FLOPs) but no better on F1. + +The broader lesson across all four studies: **the global temporal branch is the +workhorse; the local spatial branch and the specific module architectures are +second-order.** Spend complexity budget on the global branch, not on heavier +local encoders. + +## Caveats + +- **Single seed, small val set (280).** Every F1 gap here is < 0.012 — within + run-to-run noise. The compute/precision differences are robust; the F1 + ranking is not. A multi-seed sweep would be needed to call a winner beyond the + default. +- `tubelet × transformer` is reused from the existing `dinov2_multiscale` run + (identical config). The two `resnet3d` combos trained at batch size 8 (others + 16) for memory; this affects optimisation noise only, not the reported + FLOPs/latency. + +## Reproduce + +```bash +# Default cell (tubelet x transformer): +uv run dvc repro train_dinov2_multiscale evaluate_dinov2_multiscale +# The other 5 combos: +uv run dvc repro train_full_combo evaluate_full_combo +``` + +Per-combo metrics, confusion matrices, and PR/ROC curves are in +`data/08_reporting/full__/{train,val}/` (and +`data/08_reporting/dinov2_multiscale/` for the default cell). diff --git a/experiments/temporal-models/tube-multiscale-fusion/Makefile b/experiments/temporal-models/tube-multiscale-fusion/Makefile new file mode 100644 index 00000000..9953b376 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/Makefile @@ -0,0 +1,20 @@ +.PHONY: install lint format test help notebook + +help: ## Show this help + @grep -E '^[a-zA-Z_-]+:.*?## .*$$' $(MAKEFILE_LIST) | sort | awk 'BEGIN {FS = ":.*?## "}; {printf "\033[36m%-15s\033[0m %s\n", $$1, $$2}' + +install: ## Install dependencies and set up notebook output stripping + uv sync + uv run nbstripout --install + +lint: ## Run ruff linter on code and notebooks + uv run ruff check . + +format: ## Format code and notebooks with ruff + uv run ruff format . + +test: ## Run tests with pytest + uv run pytest tests/ -v + +notebook: ## Launch JupyterLab for notebooks + uv run jupyter lab notebooks/ diff --git a/experiments/temporal-models/tube-multiscale-fusion/README.md b/experiments/temporal-models/tube-multiscale-fusion/README.md new file mode 100644 index 00000000..0ec60573 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/README.md @@ -0,0 +1,327 @@ +# tube-multiscale-fusion + +Two-branch temporal smoke classifier with multiscale spatio-temporal context. +Evolution of [`bbox-tube-motion-fusion`](../bbox-tube-motion-fusion/): drops the +per-frame motion CNN and adds a local spatio-temporal tube transformer that +captures high-frequency detail, while keeping a global DINOv2 sequence context +branch for long-range plume evolution. + +## Motivation + +Smoke and its hardest distractors — clouds, fog, haze, dust — can look almost +identical in any *single* frame. What separates them is **how they move**, and +crucially they move differently at different scales. This model is built around +that observation, which is why it splits the problem into a **global** and a +**local** branch instead of relying on one monolithic spatio-temporal encoder. + +### Why two branches instead of one + +A single encoder forced to describe a whole tube must trade off scales: pool +aggressively and you keep the long-range shape but blur out fine texture; keep +the texture and you blow up the token count and lose a clean notion of "the +overall trajectory." Smoke discrimination needs *both* signals at once, and +they live at genuinely different scales, so we model them with two specialised +branches and let a fusion step decide how to combine them. + +- **Global branch — coarse shape over long time.** Each frame is embedded with + DINOv2 and the 16-frame sequence is summarised into one context vector. This + captures the *low-frequency* dynamics: is the region roughly static or slowly + drifting (clouds, fog banks, a stationary haze layer), or is it growing, + rising, and changing silhouette over many seconds (a developing plume)? This + is the question best answered by looking at the entire sequence at once, and + it is exactly the kind of smooth, large-scale evolution that survives heavy + spatial pooling. + +- **Local branch — high-frequency detail over short time.** The telltale sign + of *smoke* rather than a cloud is **turbulence**: the boundary flickers, + wisps detach, internal texture roils and reorganises from frame to frame. + This is a *high-frequency* spatio-temporal signal, and it is precisely what a + single global vector destroys — averaging the whole patch to 384 numbers + smooths away the very flicker that distinguishes turbulent smoke from the + laminar, low-frequency drift of fog or cloud. To preserve it we keep the + patch decomposed into small spatial cells and track each cell across a short + window of frames (a *tube*). Encoding each tube separately lets the model + read the local motion signature — turbulent and high-variance for smoke, + smooth and coherent for clouds/fog — that is invisible at the global scale. + +### Why process *tubes* (local motion) at all + +A static crop tells you what a region looks like; a tube tells you how that +region *changes*. By feeding the local encoder short, overlapping spatial- +temporal volumes we ask it to characterise per-cell motion rather than per-cell +appearance. Turbulent smoke produces strong, irregular frame-to-frame change +inside a cell; clouds and fog produce weak, slowly-varying change. Overlapping +the temporal windows (stride < tube length) means no transition between frames +falls on a window boundary, so short-lived turbulent events are always captured +inside at least one tube. This is the high-frequency cue that appearance-only +and globally-pooled models systematically miss, and it is why early, ambiguous +frames — where a nascent plume still *looks* like haze — can still be flagged +from their motion. + +### Why fuse with global-as-query cross-attention + +The two signals are complementary but asymmetric: the local tubes are the +*evidence* (where and how strongly is something moving turbulently?), and the +global vector is the *context* (over the whole sequence, is this consistent +with a growing plume or with static weather?). We therefore let the local tube +tokens first exchange information among themselves (self-attention, so a +turbulent cell can be read relative to its neighbours), then let the **global +vector act as the query** that attends over the local tubes (cross-attention). +This phrases the final decision as: *"given the overall trajectory I observed, +which local motion signatures matter, and do they add up to smoke?"* — using +long-range context to weight and interpret the high-frequency local evidence, +rather than averaging the two and hoping the signal survives. + +The empirical payoff (see Results) is that this RGB-only design matches the +previous motion-CNN baseline **without** any precomputed optical-flow / frame- +difference inputs: the local tube transformer learns the turbulence cue +directly from pixels. + +## Approach + +``` +patches (B, 16, 3, 224, 224) + mask (B, 16) + │ + ├──► Global branch + │ DINOv2 ViT-S/14 per frame → (B, 16, 384) + │ Transformer aggregator (CLS + pos) → (B, 384) = global_vec + │ + └──► Local branch + extract_tubes: + spatial unfold (grid_size × grid_size cells) + temporal sliding windows (tube_length, temporal_stride) + → (B, N_tubes, 3, T_t, h, w) + LocalTubeEncoder per tube: + tubelet Conv3d (t_kernel × h_patch × w_patch) + → tokens + CLS → self-attention + → (B, N_tubes, 384) + tube_validity_mask → (B, N_tubes) + │ + ▼ + FusionModule (×2 blocks): + self-attn over local tubes + cross-attn: global=Q, locals=KV + → (B, 384) + │ + ▼ + MLP head (Linear→GELU→Linear) → logit (B,) +``` + +### Component summary + +| Module | File | Role | +|--------|------|------| +| `GlobalBranch` | `src/.../global_branch.py` | Frozen DINOv2 ViT-S/14 (last block finetuned) + 2-layer Transformer aggregator. | +| `LocalBranch` | `src/.../local_branch.py` | `extract_tubes` + tubelet Conv3d + self-attn video transformer per tube. | +| `FusionModule` | `src/.../fusion.py` | Self-attn over local tokens + cross-attn (global=Q, locals=KV). | +| `TubeMultiscaleClassifier` | `src/.../classifier.py` | Glues the three modules + MLP classification head. | +| `LitTubeMultiscaleClassifier` | `src/.../lit_module.py` | Lightning wrapper: BCE, AdamW two-group, cosine warmup, F1 callbacks. | + +### Default geometry + +Picked from the resolution sweep (see Results): a **2×2 spatial grid of +112×112 cells** with **4-frame temporal windows at stride 2** — yielding +7 × 4 = **28 tubes per sequence**. + +All knobs are exposed in `params.yaml` under `local_branch.*`. + +## Data + +Reuses the upstream pipeline from `bbox-tube-motion-fusion`: + +- `pyro-dataset v2.2.0` (sequential train/val) imported via DVC, truncated to + 16 frames per sequence. +- Greedy IoU tube matching + 1.5× context bbox crops, resized to 224×224 + PNGs at `data/05_model_input/{train,val}/`. + +```bash +uv sync +uv run dvc import https://github.com/pyronear/pyro-dataset \ + data/processed/sequential_train_val/train \ + -o data/01_raw/datasets_full/train --rev v2.2.0 +uv run dvc import https://github.com/pyronear/pyro-dataset \ + data/processed/sequential_train_val/val \ + -o data/01_raw/datasets_full/val --rev v2.2.0 +uv run dvc pull +``` + +Train / val tube counts after IoU-based filtering: 2 831 / 280. + +## Results + +Resolution sweep (single-seed, same training schedule and 5-epoch early-stop +patience on `val/f1`): + +| variant | grid / tube_len / stride | tubes/seq | train F1 | val F1 | val acc | val prec | val rec | val PR-AUC | +|--------------------|--------------------------|----------:|---------:|-------:|--------:|---------:|--------:|-----------:| +| **default** (2×2) | 2×2 / 4 / 2 | 28 | 0.9810 | **0.9783** | 0.9786 | 0.9574 | **1.0000** | 0.9936 | +| spatial_4x4 | 4×4 / 4 / 2 | 112 | 0.9344 | 0.9673 | 0.9679 | 0.9500 | 0.9852 | 0.9874 | +| spatial_8x8 | 8×8 / 4 / 2 | 448 | 0.9701 | 0.9745 | 0.9750 | 0.9571 | 0.9926 | 0.9942 | +| temporal_stride1 | 2×2 / 4 / 1 | 52 | 0.9769 | 0.9781 | 0.9786 | 0.9640 | 0.9926 | **0.9954** | +| temporal_len8 | 2×2 / 8 / 4 | 12 | 0.9760 | 0.9744 | 0.9750 | 0.9638 | 0.9852 | 0.9939 | + +> Note: sweep variants `temporal_stride1` and `temporal_len8` use the new +> 2×2 spatial default; their tube counts are listed accordingly. + +**Confusion matrix (val, 280 sequences)** of the default 2×2 variant: + +| | predicted fp | predicted smoke | +|---:|---:|---:| +| **fp** | 139 (TN) | 6 (FP) | +| **smoke** | 0 (FN) | 135 (TP) | + +Compared to the **bbox-tube-motion-fusion** baseline: + +| model | val F1 | val acc | val prec | val rec | val PR-AUC | extra inputs | +|---|---:|---:|---:|---:|---:|---| +| bbox-tube-motion-fusion (`vit_dinov2_motion_frame_diff`) | 0.9776 | — | — | — | — | precomputed motion images | +| **tube-multiscale-fusion (default 2×2)** | **0.9783** | 0.9786 | 0.9574 | **1.0000** | 0.9936 | RGB only | + +Same backbone (DINOv2 ViT-S/14, last block fine-tuned), same training schedule +class, with **no motion-feature precomputation** — the local tube transformer +learns the equivalent signal from raw pixels. + +### Benchmarking + +Standardized Pyronear R&D metrics (see [GUIDELINES.md](../../GUIDELINES.md)) +for the default 2×2 model on the val split (280 tubes), computed by +`scripts/benchmark.py`. Hardware: NVIDIA RTX 4090 (GPU) / 24-thread CPU. + +| Metric | Value | +|--------|-------| +| **Recall @ FPR=1%** | 0.874 | +| **Recall @ FPR=5%** | 1.000 | +| **Recall @ FPR=10%** | 1.000 | +| **Time-to-detection** (median) | 2 frames ≈ 30 s after tube start | +| **Time-to-detection** (mean) | 2.07 frames ≈ 32 s; 135/135 positives eventually fire | +| **Inference latency (GPU)** | 10.7 ms/sequence → 0.67 ms/frame | +| **Inference latency (CPU)** | 290 ms/sequence → 18.2 ms/frame | +| **Model size** | 36.4 M params (16.6 M trainable, 19.9 M frozen DINOv2) | +| **FLOPs** | 226.5 GFLOPs/sequence → 14.2 GFLOPs/frame | + +Notes: + +- **Recall @ FPR** is the tube-level ROC operating point: at a 5 % false-alarm + rate every smoke tube in the val set is recovered. The 1 % point (0.874) is + the conservative-threshold regime relevant for low-nuisance deployment. +- **Time-to-detection** is measured by feeding the model increasing frame + prefixes (k = 2…16, later frames masked — the same variable-length contract + used in training) and recording the first prefix whose probability crosses + 0.5. Reported as `(k_fire − 1) × Δt`, with Δt = 30 s the median inter-frame + interval in the val sequences. Median detection at the 2nd frame means smoke + is typically flagged within one frame interval of the tube's first detection. +- **FLOPs** is dominated by the 16 per-frame DINOv2 ViT-S/14 forward passes; + the local tube transformer and fusion add a small fraction on top. + +Reproduce with: + +```bash +uv run dvc repro benchmark_dinov2_multiscale +``` + +### Ablation: remove the temporal module (global branch) + +To isolate what the **global DINOv2 sequence branch** (the "temporal module") +contributes, we train a faithful ablation: the **local branch and the fusion +module are the exact same modules with the same hyperparameters** as the full +model, and the *only* change is that the global branch is removed. Because the +fusion's cross-attention needs a query (the global context vector in the full +model), that single input is replaced by a **learnable query token** — a +constant, data-independent parameter. Everything else (local tube branch, +fusion self-attention + cross-attention + FFN, MLP head) is byte-for-byte +identical. Same tube geometry (2×2 / len 4 / stride 2 → 28 tubes/seq), schedule, +and data. + +Removing the global branch removes the 16 per-frame DINOv2 forward passes that +dominate the full model's compute, so the ablation is strictly *smaller and +cheaper* — exactly the point of an ablation. + +| | **Full model** (global + local + fusion) | **Ablation** (no temporal module) | +|---|---:|---:| +| val F1 | **0.9783** | 0.8716 | +| val accuracy | **0.9786** | 0.8643 | +| val precision | **0.9574** | 0.8012 | +| val recall | **1.0000** | 0.9556 | +| val PR-AUC | **0.9936** | 0.9019 | +| val FP / FN (of 280) | **6 / 0** | 32 / 6 | +| Recall @ FPR=1% | **0.874** | 0.193 | +| Recall @ FPR=5% | **1.000** | 0.563 | +| Recall @ FPR=10% | **1.000** | 0.748 | +| Params (trainable) | 36.4 M (16.6 M) | **11.3 M** (11.3 M) | +| GFLOPs / sequence | 226.5 | **30.5** | +| GPU latency (ms/seq) | 10.7 | **2.1** | + +**Takeaway.** Removing the temporal module costs ~11 F1 points, and the damage +is concentrated exactly where the design predicts: **precision and the +low-false-alarm regime**, not recall. False positives jump 5× (6 → 32), +precision drops 0.957 → 0.801, and recall at a strict 1 % FPR collapses +0.874 → 0.193 — while recall stays comparatively high (1.000 → 0.956). In other +words, the local tube branch alone still *finds* smoke, but without the global +context it can no longer reliably *reject* slow-moving look-alikes (cloud, fog, +haze): local turbulence alone is an ambiguous cue, and it takes the long-range +sequence context to confirm whether that motion is a growing plume or benign +weather. The ablation is ~7× cheaper (30.5 vs 226.5 GFLOPs) precisely because it +drops the DINOv2 sequence branch — but that branch is what buys the +deployment-critical low-FPR operating point. + +Reproduce with: + +```bash +uv run dvc repro train_ablation_no_temporal evaluate_ablation_no_temporal +``` + +## How to Reproduce + +```bash +uv sync +# Import data (see "Data" above) +uv run dvc repro +``` + +Run just the default training and packaging: + +```bash +uv run dvc repro train_dinov2_multiscale +uv run dvc repro evaluate_dinov2_multiscale +uv run dvc repro package_dinov2_multiscale +``` + +Re-run only the resolution sweep: + +```bash +uv run dvc repro train_dinov2_multiscale_sweep evaluate_dinov2_multiscale_sweep +``` + +## Packaged model + +`scripts/package_model.py` produces a self-contained +`data/07_model_output/dinov2_multiscale/model_package.zip` (~245 MB) with: + +- `checkpoint.pt` — Lightning checkpoint +- `params.yaml` — exactly the `global_branch`, `local_branch`, `fusion`, and + training-variant blocks used to train this checkpoint +- `manifest.json` — package version, SHA-256, params key +- `README.md` — loading instructions and inference contract + +To load the packaged model: + +```python +import zipfile, tempfile +from pathlib import Path +from tube_multiscale_fusion.lit_module import LitTubeMultiscaleClassifier + +with zipfile.ZipFile("model_package.zip") as zf, tempfile.TemporaryDirectory() as td: + zf.extractall(td) + lit = LitTubeMultiscaleClassifier.load_from_checkpoint( + str(Path(td) / "checkpoint.pt"), pretrained=False + ) + lit.eval() +``` + +## Tests + +```bash +make install +make test # all tests +uv run pytest tests/ -m "not slow" # skip the heavy DINOv2 download tests +``` diff --git a/experiments/temporal-models/tube-multiscale-fusion/SPATIAL_COMPARISON.md b/experiments/temporal-models/tube-multiscale-fusion/SPATIAL_COMPARISON.md new file mode 100644 index 00000000..5c545b3e --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/SPATIAL_COMPARISON.md @@ -0,0 +1,117 @@ +# Spatial-module comparison — tube-multiscale-fusion + +This compares architectures for the **spatial module**: the per-tube encoder in +the local branch that turns each spatio-temporal tube `(3, T, h, w)` into one +vector. It is the local-branch counterpart of [TEMPORAL_COMPARISON.md](TEMPORAL_COMPARISON.md). + +## Setup + +To isolate the spatial module, all runs use the **local-only** setting +(`ablation_variant: no_temporal`): the global DINOv2 sequence branch is removed, +tubes are extracted (2×2 grid of 112×112 cells × 4-frame windows at stride 2 → +28 tubes/seq), each tube is embedded by the **encoder under test**, the tube +vectors go through the fusion module (self-attention + learnable-query +cross-attention) and an MLP head. Only the per-tube encoder varies. Same data, +seed (42), schedule, augmentation. Metrics on the **val split (280 tubes)**, +single seed. + +> Because the global branch is removed, these are *local-only* numbers — well +> below the full two-branch model (F1 0.978). This study answers "which encoder +> is the best **spatial module**", not "which model is best overall". See the +> [ablation study](ABLATIONS.md) for the branch-level picture. + +| Encoder | Description | +|---------|-------------| +| **Tubelet transformer** (baseline/current) | Conv3d tubelet embedding → `[CLS]` + joint spatio-temporal self-attention. | +| **3D ResNet** | Kinetics-400 **pretrained** `r3d_18` per tube. | +| **ViViT** | Conv3d tubelet embedding → **factorised** spatial-then-temporal self-attention (ViViT Model-3). | +| **ConvLSTM** | Per-frame 2D CNN stem → ConvLSTM recurrence over the tube's frames. | +| **TSM** | Temporal Shift Module: 2D CNN with temporal channel shifts → temporal mean pool. | + +All encoders except 3D ResNet are trained from scratch. + +## Results (val, 280 tubes) + +| Encoder | F1 | Acc | Prec | Recall | PR-AUC | FP | FN | Params | GFLOPs/seq | ms/seq¹ | R@FPR=1% | @5% | +|---------|---:|---:|---:|---:|---:|---:|---:|---:|---:|---:|---:|---:| +| **3D ResNet** (Kinetics) | **0.9416** | **0.9429** | **0.9281** | 0.9556 | **0.9788** | **10** | 6 | 40.6 M | 604.2 | 14.1 | **0.526** | **0.941** | +| **ViViT** (factorised) | 0.8904 | 0.8857 | 0.8280 | 0.9630 | 0.9235 | 27 | 5 | 14.8 M | 54.9 | 4.0 | 0.119 | 0.704 | +| **Tubelet transformer** (baseline) | 0.8716 | 0.8643 | 0.8012 | 0.9556 | 0.9019 | 32 | 6 | 11.3 M | 30.5 | 2.1 | 0.193 | 0.563 | +| **ConvLSTM** | 0.8581 | 0.8429 | 0.7600 | **0.9852** | 0.8679 | 42 | **2** | 8.7 M | 72.7 | 3.5 | 0.215 | 0.370 | +| **TSM** | 0.8503 | 0.8429 | 0.7862 | 0.9259 | 0.8594 | 34 | 10 | 7.7 M | 27.4 | 2.8 | 0.148 | 0.444 | + +(sorted by F1) ¹ Batch-1, single RTX 4090. + +## Findings + +### 1. The spatial encoder choice matters a *lot* — far more than the temporal one. + +F1 spans **0.85 → 0.94 (≈9 points)** across encoders, versus the ~0.8-point +spread in the [temporal comparison](TEMPORAL_COMPARISON.md). The reason is +structural: in the local-only setting the per-tube encoder *is* the entire +feature extractor (there is no DINOv2 global branch to lean on), so its quality +dominates the result. This is the opposite regime from the temporal study, +where strong DINOv2 features made the aggregator a minor lever. + +### 2. Pretraining is the dominant factor — 3D ResNet wins decisively. + +`r3d_18` is the **only** pretrained encoder and it is far ahead: **F1 0.942, +PR-AUC 0.979, recall@5%FPR 0.941**, and it roughly **thirds the false positives** +(10 vs the baseline's 32). Kinetics-400 ships it with strong, general motion +priors that the from-scratch encoders cannot learn from ~2.8 k training tubes. +The cost is steep: **20× the FLOPs** (604 vs 30.5) and the most parameters +(40.6 M), since `r3d_18` runs over all 28 tubes per sequence. + +### 3. Among from-scratch encoders, factorised attention (ViViT) is best. + +Excluding the pretrained model, the ranking is +**ViViT (0.890) > tubelet-transformer (0.872) > ConvLSTM (0.858) > TSM (0.850)**. +ViViT's factorised spatial-then-temporal attention edges the current joint +self-attention tubelet encoder by ~1.9 F1 at ~2× the FLOPs (54.9 vs 30.5) — +a modest, cheap upgrade. + +### 4. ConvLSTM and TSM are not worth it here. + +Both are the lightest (7–9 M params) but the **worst on F1 and precision**: they +over-fire (ConvLSTM recall 0.985 but precision 0.76, 42 FP). Recurrent/shift +convolutional encoders trained from scratch on this small dataset don't match +even the from-scratch transformers, and bring no compute advantage over the +baseline tubelet encoder. + +### Recommendation + +- **In isolation, `r3d_18` is the clear best spatial module** — pretraining is + the decisive factor. Choose it if the local branch is to be a primary + pathway, and budget for its 20× FLOPs. +- **For the actual two-branch model**, recall from the [ablation study](ABLATIONS.md) + that the local branch adds only ~0.7 F1 on top of the global branch. So the + expensive `r3d_18` is likely a poor trade there, and **ViViT** is the more + sensible upgrade over the current tubelet-transformer: slightly better, still + cheap, trained from scratch. Either change should be re-validated end-to-end + in the full model before adoption. +- The current **tubelet-transformer** default is a reasonable + cost/quality middle ground for the local branch. + +## Caveats + +- **Local-only numbers.** These isolate the spatial module and are not directly + comparable to the full model; the best path is to re-run the top encoders + (r3d_18, ViViT) inside the full two-branch model. +- **Single seed, small val set (280).** The from-scratch encoders cluster + within run-to-run noise of each other (F1 0.85–0.89); the pretrained-vs-scratch + gap and the precision differences are large and robust. +- `r3d_18` ran at batch size 8 (vs 16 for the others) for memory; this affects + only optimisation noise, not the reported FLOPs/latency. + +## Reproduce + +```bash +# Tubelet-transformer baseline (local-only) +uv run dvc repro train_ablation_no_temporal evaluate_ablation_no_temporal +# Encoder variants +uv run dvc repro train_spatial evaluate_spatial +``` + +Per-variant metrics, confusion matrices, and PR/ROC curves are written to +`data/08_reporting/spatial_/{train,val}/` (and +`data/08_reporting/ablation_no_temporal/` for the tubelet-transformer baseline). diff --git a/experiments/temporal-models/tube-multiscale-fusion/TEMPORAL_COMPARISON.md b/experiments/temporal-models/tube-multiscale-fusion/TEMPORAL_COMPARISON.md new file mode 100644 index 00000000..a136c3a7 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/TEMPORAL_COMPARISON.md @@ -0,0 +1,130 @@ +# Temporal-module comparison — tube-multiscale-fusion + +The [ablation study](ABLATIONS.md) showed the **temporal module** (the global +branch that aggregates the 16 per-frame DINOv2 embeddings into one sequence +vector) is by far the most important component. This document compares +different architectures for that aggregator. + +## Setup + +To isolate the temporal module, all runs use the **global-only** setting +(`ablation_variant: no_spatial`): DINOv2 ViT-S/14 per-frame (last block +fine-tuned) → **aggregator** → MLP head. No local tube branch, no fusion — so +the only thing that varies is how the `(B, 16, 384)` per-frame sequence is +collapsed to a single `(B, 384)` vector. Same data, seed (42), schedule, and +augmentation throughout. Metrics on the **val split (280 tubes)**, single seed. + +The aggregator takes `(B, T, D)` + a frame mask and returns `(B, D)`: + +| Aggregator | How it collapses the sequence | +|------------|-------------------------------| +| **Transformer** (baseline/default) | Learnable `[CLS]` + positional embeddings + 2-layer Transformer encoder; CLS readout. | +| **LSTM** | `nn.LSTM` over packed (masked) frames; last hidden state. | +| **GRU** | `nn.GRU` over packed (masked) frames; last hidden state. | +| **MLP** | Zero padded frames, flatten `T×D`, 2-layer MLP. | +| **1D CNN** | `Conv1d` over the temporal axis (2 layers, k=3) + masked mean pool. | +| **Linear + weighted avg** | Per-frame `Linear`, learned scalar score per frame, softmax-weighted average. | + +## Results (val, 280 tubes) + +| Aggregator | F1 | Acc | Prec | Recall | PR-AUC | FP | FN | Recall@FPR=1% | @5% | +|------------|---:|---:|---:|---:|---:|---:|---:|---:|---:| +| **LSTM** | **0.9747** | 0.9750 | 0.9507 | **1.0000** | 0.9930 | 7 | **0** | 0.867 | **1.000** | +| **MLP** | 0.9745 | 0.9750 | **0.9571** | 0.9926 | 0.9873 | 6 | 1 | 0.519 | 0.993 | +| **1D CNN** | 0.9710 | 0.9714 | 0.9504 | 0.9926 | 0.9897 | 7 | 1 | 0.770 | 0.993 | +| **Transformer** (baseline) | 0.9708 | 0.9714 | 0.9568 | 0.9852 | 0.9901 | 6 | 2 | 0.770 | 0.993 | +| **GRU** | 0.9673 | 0.9679 | 0.9500 | 0.9852 | **0.9952** | 7 | 2 | **0.889** | **1.000** | +| **Linear + weighted avg** | 0.9603 | 0.9607 | 0.9366 | 0.9852 | 0.9908 | 9 | 2 | 0.815 | 0.985 | + +(sorted by F1) + +### Size & compute + +| Aggregator | Total params | Trainable | GFLOPs/seq | Latency (ms/seq)¹ | +|------------|---:|---:|---:|---:| +| Transformer | 25.3 M | 5.43 M | 196.1 | 8.8 | +| LSTM | 22.9 M | 3.06 M | 196.0 | 8.9 | +| GRU | 22.6 M | 2.76 M | 196.0 | 8.9 | +| MLP | 28.4 M | 8.56 M | 196.0 | 8.7 | +| 1D CNN | 22.6 M | 2.76 M | 196.0 | 8.7 | +| Linear + weighted avg | 21.9 M | 2.02 M | 196.0 | 8.8 | + +¹ Batch-1, single RTX 4090. + +## Findings + +### 1. Compute is identical — the aggregator choice is essentially free. + +Every variant lands at **~196 GFLOPs and ~8.8 ms/seq**. The 16 per-frame DINOv2 +forward passes dominate so completely that the aggregator (0.15–6.7 M params) +is a rounding error in both FLOPs and latency. The decision is therefore purely +about **accuracy and parameter count**, not speed. + +### 2. The architecture barely matters — every learned mixer lands in a tight band. + +Five of the six aggregators sit within **F1 0.967–0.975** (≈0.8 points). Once +you have strong per-frame DINOv2 features, *how* you mix them across time is a +minor lever. The model is robust to this choice. + +### 3. …but you do need real temporal mixing — pure weighted averaging is worst. + +`Linear + weighted avg`, which has no frame-to-frame interaction (just a learned +average), is the clear laggard: lowest F1 (0.960) and most false positives (9). +Collapsing the sequence by a weighted mean discards the *order and dynamics* of +how the region evolves — exactly the turbulence-vs-drift signal the temporal +module exists to capture. Some sequential/interaction capacity is needed. + +### 4. Recurrent models (GRU/LSTM) are the sweet spot. + +- **GRU** gives the best ranking metrics — **PR-AUC 0.9952** and **recall@1%FPR + 0.889** (the deployment-critical low-false-alarm point) — with the *fewest* + trainable params (2.76 M, half the Transformer's 5.43 M). Its lower F1 at the + 0.5 threshold (0.967) is a thresholding artefact, not a ranking weakness. +- **LSTM** gives the best raw F1 (0.975) and perfect recall (0 missed smokes), + with R@5%FPR = 1.000. + +Both recurrent models **edge the Transformer baseline** on this isolated +temporal task while being smaller. + +### 5. MLP is a trap at the strict operating point. + +The MLP ties for the best F1 at threshold 0.5 (0.975) but has by far the +**worst recall@1%FPR (0.519)** and the most trainable params (8.56 M). Its +scores rank poorly in the low-FPR tail — good "average" accuracy that would +fail a strict false-alarm budget. Flattening `T×D` also bakes in a fixed +sequence length and gives no real temporal inductive bias. + +### Recommendation + +For this architecture, a **GRU** aggregator is the best default: best ranking +(PR-AUC, recall@low-FPR), half the parameters of the Transformer, and identical +compute. **LSTM** is the alternative if raw F1 / recall is the target. The +current **Transformer** default is mid-pack — competitive but not the strongest, +and the heaviest of the recurrent/CNN options. Avoid **MLP** (poor low-FPR +behaviour) and **linear weighted-average** (no temporal mixing) for a +false-alarm-sensitive deployment. + +> Note: this comparison is in the global-only setting. In the full two-branch +> model the cross-attention fusion may interact with the aggregator choice; +> swapping the production default to GRU should be re-validated end-to-end. + +## Caveats + +- **Single seed, small val set (280 tubes).** F1 gaps under ~0.005 (e.g. + LSTM vs MLP vs 1D CNN) are within run-to-run noise. The recurrent-vs-average + gap and the MLP low-FPR weakness are larger and more likely real, but a + multi-seed sweep is needed before changing the production default. +- `recall@FPR=1%` is estimated from only ~145 negatives, so its tail is noisy. + +## Reproduce + +```bash +# Transformer baseline (global-only) +uv run dvc repro train_ablation_no_spatial evaluate_ablation_no_spatial +# Aggregator variants +uv run dvc repro train_temporal evaluate_temporal +``` + +Per-variant metrics, confusion matrices, and PR/ROC curves are written to +`data/08_reporting/temporal_/{train,val}/` (and +`data/08_reporting/ablation_no_spatial/` for the Transformer baseline). diff --git a/experiments/temporal-models/tube-multiscale-fusion/configs/.gitkeep b/experiments/temporal-models/tube-multiscale-fusion/configs/.gitkeep new file mode 100644 index 00000000..e69de29b diff --git a/experiments/temporal-models/tube-multiscale-fusion/data/01_raw/.gitignore 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new file mode 100644 index 00000000..a5d9d98f --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/data/05_model_input/.gitignore @@ -0,0 +1,2 @@ +/train +/val diff --git a/experiments/temporal-models/tube-multiscale-fusion/data/05_model_input/.gitkeep b/experiments/temporal-models/tube-multiscale-fusion/data/05_model_input/.gitkeep new file mode 100644 index 00000000..e69de29b diff --git a/experiments/temporal-models/tube-multiscale-fusion/data/06_models/.gitignore b/experiments/temporal-models/tube-multiscale-fusion/data/06_models/.gitignore new file mode 100644 index 00000000..8aecc110 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/data/06_models/.gitignore @@ -0,0 +1,24 @@ +/dinov2_multiscale +/dinov2_multiscale_spatial_2x2 +/dinov2_multiscale_spatial_8x8 +/dinov2_multiscale_temporal_stride1 +/dinov2_multiscale_temporal_len8 +/dinov2_multiscale_spatial_4x4 +/ablation_resnet3d +/ablation_no_temporal +/ablation_weighted_mean 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a/experiments/temporal-models/tube-multiscale-fusion/data/08_reporting/temporal_linear_wavg/.gitignore b/experiments/temporal-models/tube-multiscale-fusion/data/08_reporting/temporal_linear_wavg/.gitignore new file mode 100644 index 00000000..ef615c5d --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/data/08_reporting/temporal_linear_wavg/.gitignore @@ -0,0 +1,2 @@ +/val +/train diff --git a/experiments/temporal-models/tube-multiscale-fusion/data/08_reporting/temporal_lstm/.gitignore b/experiments/temporal-models/tube-multiscale-fusion/data/08_reporting/temporal_lstm/.gitignore new file mode 100644 index 00000000..a5d9d98f --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/data/08_reporting/temporal_lstm/.gitignore @@ -0,0 +1,2 @@ +/train +/val diff --git a/experiments/temporal-models/tube-multiscale-fusion/data/08_reporting/temporal_mlp/.gitignore b/experiments/temporal-models/tube-multiscale-fusion/data/08_reporting/temporal_mlp/.gitignore new file mode 100644 index 00000000..a5d9d98f --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/data/08_reporting/temporal_mlp/.gitignore @@ -0,0 +1,2 @@ +/train +/val diff --git a/experiments/temporal-models/tube-multiscale-fusion/dvc.lock b/experiments/temporal-models/tube-multiscale-fusion/dvc.lock new file mode 100644 index 00000000..88e52f04 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/dvc.lock @@ -0,0 +1,7319 @@ +schema: '2.0' +stages: + truncate@val: + cmd: uv run python scripts/truncate_sequences.py --input-dir + data/01_raw/datasets_full/val --output-dir data/01_raw/datasets/val + --max-frames 16 + deps: + - path: data/01_raw/datasets_full/val + hash: md5 + md5: b58404e2160d272fd736fad3aa561223.dir + size: 668383256 + nfiles: 13044 + - path: scripts/truncate_sequences.py + hash: md5 + md5: 50ac7865933889df116cf61d7f35bc63 + size: 2495 + params: + params.yaml: + truncate.max_frames: 16 + outs: + - path: data/01_raw/datasets/val + hash: md5 + md5: 2ee83a5a253a8c7c7f44e3415c74d7d3.dir + size: 385718788 + nfiles: 7594 + truncate@train: + cmd: uv run python scripts/truncate_sequences.py --input-dir + data/01_raw/datasets_full/train --output-dir data/01_raw/datasets/train + --max-frames 16 + deps: + - path: data/01_raw/datasets_full/train + hash: md5 + md5: f02174099bc4dc115dad2b69d3b4e78e.dir + size: 7543045856 + nfiles: 142052 + - path: scripts/truncate_sequences.py + hash: md5 + md5: 50ac7865933889df116cf61d7f35bc63 + size: 2495 + params: + params.yaml: + truncate.max_frames: 16 + outs: + - path: data/01_raw/datasets/train + hash: md5 + md5: 2cf294bcec0a832c25a2d1ffa086304c.dir + size: 4132370460 + nfiles: 77646 + build_tubes@val: + cmd: uv run python scripts/build_tubes.py --input-dir + data/01_raw/datasets/val --output-dir data/03_primary/tubes/val + --iou-threshold 0.2 --max-misses 2 --min-tube-length 4 + --min-detected-entries 2 + deps: + - path: data/01_raw/datasets/val + hash: md5 + md5: 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deps: + - path: data/01_raw/datasets/train + hash: md5 + md5: 2cf294bcec0a832c25a2d1ffa086304c.dir + size: 4132370460 + nfiles: 77646 + - path: scripts/build_tubes.py + hash: md5 + md5: 1553153e36118e5c306172b5cb371daa + size: 5710 + - path: src/tube_multiscale_fusion/data.py + hash: md5 + md5: b907e5a0baedb93775446678c2cce034 + size: 5078 + - path: src/tube_multiscale_fusion/tubes.py + hash: md5 + md5: 2f6f8e5e9ff7342a45ddaec8d0bedc1f + size: 11706 + - path: src/tube_multiscale_fusion/types.py + hash: md5 + md5: 71917e49ebe4659d6b1f5cb0f29a5747 + size: 1693 + params: + params.yaml: + build_tubes: + min_tube_length: 4 + min_detected_entries: 2 + tubes: + iou_threshold: 0.2 + max_misses: 2 + outs: + - path: data/03_primary/tubes/train + hash: md5 + md5: 6f5ff8ee6cb88f5b000b08682645721b.dir + size: 9636021 + nfiles: 2832 + build_model_input@train: + cmd: uv run python scripts/build_model_input.py --tubes-dir + data/03_primary/tubes/train --raw-dir data/01_raw/datasets/train + --output-dir data/05_model_input/train --context-factor 1.5 --patch-size + 224 + deps: + - path: data/01_raw/datasets/train + hash: md5 + md5: 2cf294bcec0a832c25a2d1ffa086304c.dir + size: 4132370460 + nfiles: 77646 + - path: data/03_primary/tubes/train + hash: md5 + md5: 6f5ff8ee6cb88f5b000b08682645721b.dir + size: 9636021 + nfiles: 2832 + - path: scripts/build_model_input.py + hash: md5 + md5: 1bc28c46225152680200e426c5d29c09 + size: 3715 + - path: src/tube_multiscale_fusion/model_input.py + hash: md5 + md5: fa9e8bd01b4a5228feeeb8d689405f88 + size: 3612 + params: + params.yaml: + model_input: + context_factor: 1.5 + patch_size: 224 + outs: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + build_model_input@val: + cmd: uv run python scripts/build_model_input.py --tubes-dir + data/03_primary/tubes/val --raw-dir data/01_raw/datasets/val --output-dir + data/05_model_input/val --context-factor 1.5 --patch-size 224 + deps: + - path: data/01_raw/datasets/val + hash: md5 + md5: 2ee83a5a253a8c7c7f44e3415c74d7d3.dir + size: 385718788 + nfiles: 7594 + - path: data/03_primary/tubes/val + hash: md5 + md5: 162ea13bca9521cf8920324caa6a2aaa.dir + size: 910719 + nfiles: 281 + - path: scripts/build_model_input.py + hash: md5 + md5: 1bc28c46225152680200e426c5d29c09 + size: 3715 + - path: src/tube_multiscale_fusion/model_input.py + hash: md5 + md5: fa9e8bd01b4a5228feeeb8d689405f88 + size: 3612 + params: + params.yaml: + model_input: + context_factor: 1.5 + patch_size: 224 + outs: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + train_dinov2_multiscale: + cmd: uv run python scripts/train.py --train-dir data/05_model_input/train + --val-dir data/05_model_input/val --output-dir + data/06_models/dinov2_multiscale --params-path params.yaml --params-key + train_dinov2_multiscale + deps: + - path: data/05_model_input/train + hash: md5 + 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src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 4a49a7286da503d7e0a21158d1c74295 + size: 9228 + params: + params.yaml: + augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/06_models/dinov2_multiscale + hash: md5 + md5: fca6623ba9be2bc9a236b3b9072097a4.dir + size: 278692327 + nfiles: 5 + evaluate_dinov2_multiscale@train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint data/06_models/dinov2_multiscale/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale/train --params-path + params.yaml --params-key train_dinov2_multiscale + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/dinov2_multiscale + hash: md5 + md5: fca6623ba9be2bc9a236b3b9072097a4.dir + size: 278692327 + 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ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/08_reporting/dinov2_multiscale/train + hash: md5 + md5: 1f25da63bde9a257348ba11ed80e16d3.dir + size: 581387 + nfiles: 6 + evaluate_dinov2_multiscale@val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint data/06_models/dinov2_multiscale/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale/val --params-path + params.yaml --params-key train_dinov2_multiscale + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/dinov2_multiscale + hash: md5 + md5: fca6623ba9be2bc9a236b3b9072097a4.dir + size: 278692327 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 4a36dec854fd018990b5bee70bcffd9f + size: 3556 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: dce0c5c806436477dd7f1ff93bd261a5 + size: 5179 + - path: 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head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/08_reporting/dinov2_multiscale/val + hash: md5 + md5: 12a94f552478239031e92fc8b45e01ba.dir + size: 144894 + nfiles: 6 + train_dinov2_multiscale_sweep@spatial_2x2: + cmd: uv run python scripts/train.py --train-dir data/05_model_input/train + --val-dir data/05_model_input/val --output-dir + data/06_models/dinov2_multiscale_spatial_2x2 --params-path params.yaml + --params-key train_dinov2_multiscale_spatial_2x2 + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train.py + hash: md5 + md5: 2b58199a26cb37fa2f42fbf397bab6b2 + size: 5441 + - path: src/tube_multiscale_fusion/augment.py 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saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch_spatial_2x2: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_spatial_2x2: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: 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min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch_spatial_8x8: + grid_size: 8 + cell_size: 28 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_spatial_8x8: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_spatial_8x8 + outs: + - path: data/06_models/dinov2_multiscale_spatial_8x8 + hash: md5 + md5: 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dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch_temporal_stride1: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 1 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_temporal_stride1: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_temporal_stride1 + outs: + - path: data/06_models/dinov2_multiscale_temporal_stride1 + hash: md5 + md5: af4d6248690c381f0d28469a6730fac3.dir + size: 278234097 + nfiles: 5 + 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+ aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch_temporal_len8: + grid_size: 2 + cell_size: 112 + tube_length: 8 + temporal_stride: 4 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_temporal_len8: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_temporal_len8 + outs: + - path: data/06_models/dinov2_multiscale_temporal_len8 + hash: md5 + md5: e8669b5629c79a9d377b199e1779e2c1.dir + size: 278384216 + nfiles: 5 + evaluate_dinov2_multiscale_sweep@spatial_2x2-train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint + data/06_models/dinov2_multiscale_spatial_2x2/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_spatial_2x2/train + --params-path params.yaml --params-key train_dinov2_multiscale_spatial_2x2 + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/dinov2_multiscale_spatial_2x2 + hash: md5 + md5: e53145752327bb1e91450d552d57382f.dir + size: 278684379 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 4a36dec854fd018990b5bee70bcffd9f + size: 3556 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: 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batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_spatial_2x2 + outs: + - path: data/08_reporting/dinov2_multiscale_spatial_2x2/train + hash: md5 + md5: edfa5cacedfb9a1c20e83de0d9483cfe.dir + size: 585614 + nfiles: 6 + evaluate_dinov2_multiscale_sweep@spatial_2x2-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint + data/06_models/dinov2_multiscale_spatial_2x2/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_spatial_2x2/val + --params-path params.yaml --params-key train_dinov2_multiscale_spatial_2x2 + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: 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tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_spatial_8x8: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_spatial_8x8 + outs: + - path: data/08_reporting/dinov2_multiscale_spatial_8x8/train + hash: md5 + md5: 441101655a51abb16e0cb3f23e9feecf.dir + size: 586249 + nfiles: 6 + evaluate_dinov2_multiscale_sweep@spatial_8x8-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint + data/06_models/dinov2_multiscale_spatial_8x8/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_spatial_8x8/val + --params-path params.yaml --params-key train_dinov2_multiscale_spatial_8x8 + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/dinov2_multiscale_spatial_8x8 + hash: md5 + md5: c0cdcc7c374836b24affcfd6ae9481ec.dir + size: 278118256 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 4a36dec854fd018990b5bee70bcffd9f + size: 3556 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: dce0c5c806436477dd7f1ff93bd261a5 + size: 5179 + - path: 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+ seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_spatial_8x8 + outs: + - path: data/08_reporting/dinov2_multiscale_spatial_8x8/val + hash: md5 + md5: 45412d8a41f51be0906abbd1a24943f7.dir + size: 147824 + nfiles: 6 + evaluate_dinov2_multiscale_sweep@temporal_stride1-train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint + data/06_models/dinov2_multiscale_temporal_stride1/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_temporal_stride1/train + --params-path params.yaml --params-key + train_dinov2_multiscale_temporal_stride1 + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/dinov2_multiscale_temporal_stride1 + hash: md5 + md5: 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fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch_temporal_stride1: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 1 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_temporal_stride1: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_temporal_stride1 + outs: + - path: data/08_reporting/dinov2_multiscale_temporal_stride1/train + hash: md5 + md5: e9584a06e2a448aa725538a339bdd2f0.dir + size: 586194 + nfiles: 6 + evaluate_dinov2_multiscale_sweep@temporal_stride1-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint + data/06_models/dinov2_multiscale_temporal_stride1/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_temporal_stride1/val + --params-path params.yaml --params-key + train_dinov2_multiscale_temporal_stride1 + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/dinov2_multiscale_temporal_stride1 + hash: md5 + md5: af4d6248690c381f0d28469a6730fac3.dir + size: 278234097 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 4a36dec854fd018990b5bee70bcffd9f + size: 3556 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: 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t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_temporal_stride1: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_temporal_stride1 + outs: + - path: data/08_reporting/dinov2_multiscale_temporal_stride1/val + hash: md5 + md5: 23f1d5e1871d08c46830383d4ca8b280.dir + size: 148984 + nfiles: 6 + evaluate_dinov2_multiscale_sweep@temporal_len8-train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint + data/06_models/dinov2_multiscale_temporal_len8/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_temporal_len8/train + --params-path params.yaml --params-key + train_dinov2_multiscale_temporal_len8 + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/dinov2_multiscale_temporal_len8 + hash: md5 + md5: e8669b5629c79a9d377b199e1779e2c1.dir + size: 278384216 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 4a36dec854fd018990b5bee70bcffd9f + size: 3556 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: dce0c5c806436477dd7f1ff93bd261a5 + size: 5179 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 4cae3af1b1a020daaeeae747bd05f966 + size: 6341 + - path: src/tube_multiscale_fusion/lit_module.py + hash: md5 + md5: 4022aa3dc29c80e1a38a23182bec83b3 + size: 7307 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 4a49a7286da503d7e0a21158d1c74295 + size: 9228 + params: + params.yaml: + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch_temporal_len8: + grid_size: 2 + cell_size: 112 + tube_length: 8 + temporal_stride: 4 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_temporal_len8: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_temporal_len8 + outs: + - path: data/08_reporting/dinov2_multiscale_temporal_len8/train + hash: md5 + md5: dfad83dcb538e441275d86e54f46b912.dir + size: 586738 + nfiles: 6 + evaluate_dinov2_multiscale_sweep@temporal_len8-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint + data/06_models/dinov2_multiscale_temporal_len8/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_temporal_len8/val + --params-path params.yaml --params-key + train_dinov2_multiscale_temporal_len8 + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/dinov2_multiscale_temporal_len8 + hash: md5 + md5: e8669b5629c79a9d377b199e1779e2c1.dir + size: 278384216 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 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vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch_temporal_len8: + grid_size: 2 + cell_size: 112 + tube_length: 8 + temporal_stride: 4 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_temporal_len8: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_temporal_len8 + outs: + - path: data/08_reporting/dinov2_multiscale_temporal_len8/val + hash: md5 + md5: 79271c71ed3e07a1b73ad766daacb42d.dir + size: 148973 + nfiles: 6 + prepare: + cmd: uv run python scripts/prepare.py --model-repo + pyronear/yolo11s_nimble-narwhal_v6.0.0 --model-filename best.pt + --output-model-dir data/01_raw/models + deps: + - path: scripts/prepare.py + hash: md5 + md5: bdccf5d50ba8f71ed560834ce23a3a52 + size: 1778 + params: + params.yaml: + prepare: + model_repo: pyronear/yolo11s_nimble-narwhal_v6.0.0 + model_filename: best.pt + outs: + - path: data/01_raw/models + hash: md5 + md5: aedaaff1a57ae80b0a7f66ad4e4c623b.dir + size: 19225626 + nfiles: 1 + train_dinov2_multiscale_sweep@spatial_4x4: + cmd: uv run python scripts/train.py --train-dir data/05_model_input/train + --val-dir data/05_model_input/val --output-dir + data/06_models/dinov2_multiscale_spatial_4x4 --params-path params.yaml + --params-key train_dinov2_multiscale_spatial_4x4 + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - 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scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch_spatial_4x4: + grid_size: 4 + cell_size: 56 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_spatial_4x4: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_spatial_4x4 + outs: + - path: data/06_models/dinov2_multiscale_spatial_4x4 + hash: md5 + md5: 7986079d3746bde09cd8c024cf5c2a27.dir + size: 278212941 + nfiles: 5 + evaluate_dinov2_multiscale_sweep@spatial_4x4-train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint + data/06_models/dinov2_multiscale_spatial_4x4/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_spatial_4x4/train + --params-path params.yaml --params-key train_dinov2_multiscale_spatial_4x4 + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/dinov2_multiscale_spatial_4x4 + hash: md5 + md5: 7986079d3746bde09cd8c024cf5c2a27.dir + size: 278212941 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 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vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch_spatial_4x4: + grid_size: 4 + cell_size: 56 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_dinov2_multiscale_spatial_4x4: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_spatial_4x4 + outs: + - path: data/08_reporting/dinov2_multiscale_spatial_4x4/train + hash: md5 + md5: 3a9b78c9e4f5882eb1d516653f10592b.dir + size: 582686 + nfiles: 6 + evaluate_dinov2_multiscale_sweep@spatial_4x4-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint + data/06_models/dinov2_multiscale_spatial_4x4/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_spatial_4x4/val + --params-path params.yaml --params-key train_dinov2_multiscale_spatial_4x4 + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/dinov2_multiscale_spatial_4x4 + hash: md5 + md5: 7986079d3746bde09cd8c024cf5c2a27.dir + size: 278212941 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 4a36dec854fd018990b5bee70bcffd9f + size: 3556 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: 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batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + local_branch_section: local_branch_spatial_4x4 + outs: + - path: data/08_reporting/dinov2_multiscale_spatial_4x4/val + hash: md5 + md5: af2b0aa9895ae86bae2b98b0905d002f.dir + size: 143450 + nfiles: 6 + package_dinov2_multiscale: + cmd: uv run python scripts/package_model.py --checkpoint + data/06_models/dinov2_multiscale/best_checkpoint.pt --params-path + params.yaml --params-key train_dinov2_multiscale --output + data/07_model_output/dinov2_multiscale/model_package.zip + deps: + - path: data/06_models/dinov2_multiscale + hash: md5 + md5: e53145752327bb1e91450d552d57382f.dir + size: 278684379 + nfiles: 5 + - path: scripts/package_model.py + hash: md5 + md5: 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256730022 + benchmark_dinov2_multiscale: + cmd: uv run python scripts/benchmark.py --data-dir data/05_model_input/val + --checkpoint data/06_models/dinov2_multiscale/best_checkpoint.pt + --predictions data/08_reporting/dinov2_multiscale/val/predictions.json + --output data/08_reporting/dinov2_multiscale_benchmark/benchmark.json + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/dinov2_multiscale + hash: md5 + md5: e53145752327bb1e91450d552d57382f.dir + size: 278684379 + nfiles: 5 + - path: data/08_reporting/dinov2_multiscale/val + hash: md5 + md5: cbbb27b14880e62866f2ce722b5e31b6.dir + size: 149127 + nfiles: 6 + - path: scripts/benchmark.py + hash: md5 + md5: d8f0f237f2699b03ca9b0b455a2cdf5d + size: 8458 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 4a36dec854fd018990b5bee70bcffd9f + size: 3556 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: 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train_dinov2_multiscale: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/08_reporting/dinov2_multiscale_benchmark/benchmark.json + hash: md5 + md5: 7c66931ea3aa26855736829baf1a22a6 + size: 1134 + train_ablation_no_temporal: + cmd: uv run python scripts/train_ablation.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/ablation_no_temporal --params-path params.yaml --params-key + train_ablation_no_temporal + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 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brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_ablation_no_temporal: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + local_branch_section: local_branch + query_dim: 384 + outs: + - path: data/06_models/ablation_no_temporal + hash: md5 + md5: 24aae56b6e78bebe658a57803aca99d5.dir + size: 135163469 + nfiles: 5 + evaluate_ablation_no_temporal@val: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/ablation_no_temporal/best_checkpoint.pt --output-dir + data/08_reporting/ablation_no_temporal/val --params-path params.yaml + --params-key train_ablation_no_temporal + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/ablation_no_temporal + hash: md5 + md5: 24aae56b6e78bebe658a57803aca99d5.dir + size: 135163469 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: ab66c9e55c1e3a3942f1537fb82134ed + size: 3641 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + 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img_size: 224 + local_branch_section: local_branch + query_dim: 384 + outs: + - path: data/08_reporting/ablation_no_temporal/val + hash: md5 + md5: 9ae31aeebf94c0701647092d9f577ed6.dir + size: 149002 + nfiles: 6 + evaluate_ablation_no_temporal@train: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/train --checkpoint + data/06_models/ablation_no_temporal/best_checkpoint.pt --output-dir + data/08_reporting/ablation_no_temporal/train --params-path params.yaml + --params-key train_ablation_no_temporal + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/ablation_no_temporal + hash: md5 + md5: 24aae56b6e78bebe658a57803aca99d5.dir + size: 135163469 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 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+ batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + local_branch_section: local_branch + query_dim: 384 + outs: + - path: data/08_reporting/ablation_no_temporal/train + hash: md5 + md5: 8d5719e78491a75c82ecb030950f773d.dir + size: 590704 + nfiles: 6 + train_ablation_weighted_mean: + cmd: uv run python scripts/train_ablation_global.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/ablation_weighted_mean --params-path params.yaml + --params-key train_ablation_weighted_mean + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: 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rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_ablation_weighted_mean: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: weighted_mean + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/06_models/ablation_weighted_mean + hash: md5 + md5: b27b6ac456b6b49c9f2c177b4a2100ae.dir + size: 193430824 + nfiles: 5 + evaluate_ablation_weighted_mean@val: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/ablation_weighted_mean/best_checkpoint.pt --output-dir + data/08_reporting/ablation_weighted_mean/val --params-path params.yaml + --params-key train_ablation_weighted_mean + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/ablation_weighted_mean + hash: md5 + md5: b27b6ac456b6b49c9f2c177b4a2100ae.dir + size: 193430824 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + 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vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_ablation_weighted_mean: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: weighted_mean + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/08_reporting/ablation_weighted_mean/val + hash: md5 + md5: 60b321c084d7df4d033a8c27f03dbfca.dir + size: 145469 + nfiles: 6 + train_ablation_no_spatial: + cmd: uv run python scripts/train_ablation_global.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/ablation_no_spatial --params-path params.yaml --params-key + train_ablation_no_spatial + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train_ablation_global.py + hash: md5 + md5: 6c5570241d121de71363ba856e5e0105 + size: 5234 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 95bc858298ff235b637f7e039875f083 + size: 8610 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 4cae3af1b1a020daaeeae747bd05f966 + size: 6341 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e4608c6fa3f03dd1bc48b573602d29eb + size: 13172 + params: + params.yaml: + augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_ablation_no_spatial: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/06_models/ablation_no_spatial + hash: md5 + md5: e618d3d180048f827ffa2f07282450f1.dir + size: 144736481 + nfiles: 5 + evaluate_ablation_no_spatial@val: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/ablation_no_spatial/best_checkpoint.pt --output-dir + data/08_reporting/ablation_no_spatial/val --params-path params.yaml + --params-key train_ablation_no_spatial + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/ablation_no_spatial + hash: md5 + md5: e618d3d180048f827ffa2f07282450f1.dir + size: 144736481 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + size: 5251 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 95bc858298ff235b637f7e039875f083 + size: 8610 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 4cae3af1b1a020daaeeae747bd05f966 + size: 6341 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e4608c6fa3f03dd1bc48b573602d29eb + size: 13172 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_ablation_no_spatial: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/08_reporting/ablation_no_spatial/val + hash: md5 + md5: 82abdcd43aa40e3da255aece9c189a92.dir + size: 142108 + nfiles: 6 + evaluate_ablation_weighted_mean@train: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/train --checkpoint + data/06_models/ablation_weighted_mean/best_checkpoint.pt --output-dir + data/08_reporting/ablation_weighted_mean/train --params-path params.yaml + --params-key train_ablation_weighted_mean + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/ablation_weighted_mean + hash: md5 + md5: b27b6ac456b6b49c9f2c177b4a2100ae.dir + size: 193430824 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + size: 5251 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 95bc858298ff235b637f7e039875f083 + size: 8610 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 4cae3af1b1a020daaeeae747bd05f966 + size: 6341 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e4608c6fa3f03dd1bc48b573602d29eb + size: 13172 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 4a49a7286da503d7e0a21158d1c74295 + size: 9228 + params: + params.yaml: + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_ablation_weighted_mean: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: weighted_mean + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/08_reporting/ablation_weighted_mean/train + hash: md5 + md5: c335821663e048ae980ac6c29487a7a9.dir + size: 583368 + nfiles: 6 + evaluate_ablation_no_spatial@train: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/train --checkpoint + data/06_models/ablation_no_spatial/best_checkpoint.pt --output-dir + data/08_reporting/ablation_no_spatial/train --params-path params.yaml + --params-key train_ablation_no_spatial + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/ablation_no_spatial + hash: md5 + md5: e618d3d180048f827ffa2f07282450f1.dir + size: 144736481 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + size: 5251 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 95bc858298ff235b637f7e039875f083 + size: 8610 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 4cae3af1b1a020daaeeae747bd05f966 + size: 6341 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e4608c6fa3f03dd1bc48b573602d29eb + size: 13172 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_ablation_no_spatial: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + outs: + - path: data/08_reporting/ablation_no_spatial/train + hash: md5 + md5: a196ef28362828c199fa1358af6980f4.dir + size: 580956 + nfiles: 6 + train_temporal@gru: + cmd: uv run python scripts/train_ablation_global.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/temporal_gru --params-path params.yaml --params-key + train_temporal_gru + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train_ablation_global.py + hash: md5 + md5: 6678a014e3b92ce2046ebd6b8f90f3f7 + size: 5301 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 1c4f4f7de41e3253d389d3f4314fc4d0 + size: 8701 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_gru: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: gru + outs: + - path: data/06_models/temporal_gru + hash: md5 + md5: f8cf358b58419f54ddb7f699f5fec716.dir + size: 112687616 + nfiles: 5 + evaluate_temporal@gru-val: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/temporal_gru/best_checkpoint.pt --output-dir + data/08_reporting/temporal_gru/val --params-path params.yaml --params-key + train_temporal_gru + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/temporal_gru + hash: md5 + md5: f8cf358b58419f54ddb7f699f5fec716.dir + size: 112687616 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + size: 5251 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 1c4f4f7de41e3253d389d3f4314fc4d0 + size: 8701 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_gru: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: gru + outs: + - path: data/08_reporting/temporal_gru/val + hash: md5 + md5: 9cbfe7ef1da2666bf0f38e25fb8721cb.dir + size: 142392 + nfiles: 6 + train_temporal@conv1d: + cmd: uv run python scripts/train_ablation_global.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/temporal_conv1d --params-path params.yaml --params-key + train_temporal_conv1d + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train_ablation_global.py + hash: md5 + md5: 6678a014e3b92ce2046ebd6b8f90f3f7 + size: 5301 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 1c4f4f7de41e3253d389d3f4314fc4d0 + size: 8701 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_conv1d: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: conv1d + outs: + - path: data/06_models/temporal_conv1d + hash: md5 + md5: 69be5b9da4e9b1e069222866c9dd06c3.dir + size: 112664954 + nfiles: 5 + evaluate_temporal@conv1d-val: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/temporal_conv1d/best_checkpoint.pt --output-dir + data/08_reporting/temporal_conv1d/val --params-path params.yaml + --params-key train_temporal_conv1d + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/temporal_conv1d + hash: md5 + md5: 69be5b9da4e9b1e069222866c9dd06c3.dir + size: 112664954 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + size: 5251 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: 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train_temporal_lstm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: lstm + outs: + - path: data/06_models/temporal_lstm + hash: md5 + md5: b9d77529a81befef12ec2555bcc18352.dir + size: 116259757 + nfiles: 5 + evaluate_temporal@lstm-train: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/train --checkpoint + data/06_models/temporal_lstm/best_checkpoint.pt --output-dir + data/08_reporting/temporal_lstm/train --params-path params.yaml + --params-key train_temporal_lstm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/temporal_lstm + hash: md5 + md5: b9d77529a81befef12ec2555bcc18352.dir + size: 116259757 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + size: 5251 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 1c4f4f7de41e3253d389d3f4314fc4d0 + size: 8701 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_lstm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: lstm + outs: + - path: data/08_reporting/temporal_lstm/train + hash: md5 + md5: 9043d6e8d6b7a9bfd1180f82a889089b.dir + size: 579279 + nfiles: 6 + train_temporal@linear_wavg: + cmd: uv run python scripts/train_ablation_global.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/temporal_linear_wavg --params-path params.yaml --params-key + train_temporal_linear_wavg + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: 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- 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_linear_wavg: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: linear_wavg + outs: + - path: data/06_models/temporal_linear_wavg + hash: md5 + md5: d8963d9ef59a5ef56448ed72c5c34511.dir + size: 103811952 + nfiles: 5 + evaluate_temporal@linear_wavg-val: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/temporal_linear_wavg/best_checkpoint.pt --output-dir + data/08_reporting/temporal_linear_wavg/val --params-path params.yaml + --params-key train_temporal_linear_wavg + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/temporal_linear_wavg + hash: md5 + md5: d8963d9ef59a5ef56448ed72c5c34511.dir + size: 103811952 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + size: 5251 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 1c4f4f7de41e3253d389d3f4314fc4d0 + size: 8701 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_linear_wavg: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: linear_wavg + outs: + - path: data/08_reporting/temporal_linear_wavg/val + hash: md5 + md5: 8d8acb1b795fd7f2c237d4fe6deb6af5.dir + size: 145067 + nfiles: 6 + train_temporal@mlp: + cmd: uv run python scripts/train_ablation_global.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/temporal_mlp --params-path params.yaml --params-key + train_temporal_mlp + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train_ablation_global.py + hash: md5 + md5: 6678a014e3b92ce2046ebd6b8f90f3f7 + size: 5301 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 1c4f4f7de41e3253d389d3f4314fc4d0 + size: 8701 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_mlp: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + 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src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_conv1d: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + 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src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_lstm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + 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src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_gru: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + 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path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_linear_wavg: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: linear_wavg + outs: + - path: data/08_reporting/temporal_linear_wavg/train + hash: md5 + md5: 548e7b934bc97ee99dfe136fab89770e.dir + size: 584221 + nfiles: 6 + evaluate_temporal@mlp-train: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/train --checkpoint + data/06_models/temporal_mlp/best_checkpoint.pt --output-dir + data/08_reporting/temporal_mlp/train --params-path params.yaml + --params-key train_temporal_mlp + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/temporal_mlp + hash: md5 + md5: 9a4eec86025bd02e640b39aedfc7b252.dir + size: 182282337 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + size: 5251 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 1c4f4f7de41e3253d389d3f4314fc4d0 + size: 8701 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_mlp: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: mlp + outs: + - path: data/08_reporting/temporal_mlp/train + hash: md5 + md5: 0da9cb59981b9a125b7ef631e62a7fee.dir + size: 578771 + nfiles: 6 + evaluate_temporal@mlp-val: + cmd: uv run python scripts/evaluate_ablation_global.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/temporal_mlp/best_checkpoint.pt --output-dir + data/08_reporting/temporal_mlp/val --params-path params.yaml --params-key + train_temporal_mlp + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/temporal_mlp + hash: md5 + md5: 9a4eec86025bd02e640b39aedfc7b252.dir + size: 182282337 + nfiles: 5 + - path: scripts/evaluate_ablation_global.py + hash: md5 + md5: 6d3be966e0bf9143aa20ba3228a33c67 + size: 5251 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: 1c4f4f7de41e3253d389d3f4314fc4d0 + size: 8701 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: e09db331d78b94f700a33fadbdedd246 + size: 13267 + params: + params.yaml: + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_temporal_mlp: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + aggregator_kind: mlp + outs: + - path: data/08_reporting/temporal_mlp/val + hash: md5 + md5: 83dca1e4e32f2c46e3db807da84cb1a2.dir + size: 141485 + nfiles: 6 + train_spatial@tsm: + cmd: uv run python scripts/train_ablation.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/spatial_tsm --params-path params.yaml --params-key + train_spatial_tsm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train_ablation.py + hash: md5 + md5: 4183862a7b58d1a33f4a49f30bdc2d92 + size: 4858 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: 76a76ab01092ab2c2215724c9c0155e7 + size: 13357 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_spatial_tsm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: tsm + outs: + - path: data/06_models/spatial_tsm + hash: md5 + md5: 3a18c01dad1a009114e8d9431eefd902.dir + size: 92160971 + nfiles: 5 + train_spatial@convlstm: + cmd: uv run python scripts/train_ablation.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/spatial_convlstm --params-path params.yaml --params-key + train_spatial_convlstm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train_ablation.py + hash: md5 + md5: 4183862a7b58d1a33f4a49f30bdc2d92 + size: 4858 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: 76a76ab01092ab2c2215724c9c0155e7 + size: 13357 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_spatial_convlstm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: convlstm + outs: + - path: data/06_models/spatial_convlstm + hash: md5 + md5: fb715017498a5656597aef62fe5b8b9e.dir + size: 103970301 + nfiles: 5 + evaluate_spatial@tsm-val: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/spatial_tsm/best_checkpoint.pt --output-dir + data/08_reporting/spatial_tsm/val --params-path params.yaml --params-key + train_spatial_tsm + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/spatial_tsm + hash: md5 + md5: 3a18c01dad1a009114e8d9431eefd902.dir + size: 92160971 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: 76a76ab01092ab2c2215724c9c0155e7 + size: 13357 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_spatial_tsm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: tsm + outs: + - path: data/08_reporting/spatial_tsm/val + hash: md5 + md5: a42eb9d0ba7a2cdbe019654f0b859f54.dir + size: 152333 + nfiles: 6 + train_spatial@resnet3d: + cmd: uv run python scripts/train_ablation.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/spatial_resnet3d --params-path params.yaml --params-key + train_spatial_resnet3d + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train_ablation.py + hash: md5 + md5: 4183862a7b58d1a33f4a49f30bdc2d92 + size: 4858 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: 76a76ab01092ab2c2215724c9c0155e7 + size: 13357 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_spatial_resnet3d: + max_frames: 16 + batch_size: 8 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: resnet3d + outs: + - path: data/06_models/spatial_resnet3d + hash: md5 + md5: dd66eec446fbc17992fc4e162546dcf2.dir + size: 487058223 + nfiles: 5 + evaluate_spatial@resnet3d-val: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/spatial_resnet3d/best_checkpoint.pt --output-dir + data/08_reporting/spatial_resnet3d/val --params-path params.yaml + --params-key train_spatial_resnet3d + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/spatial_resnet3d + hash: md5 + md5: dd66eec446fbc17992fc4e162546dcf2.dir + size: 487058223 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: 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img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: resnet3d + outs: + - path: data/08_reporting/spatial_resnet3d/val + hash: md5 + md5: ddf6582cc94ace1363b6c39503c78446.dir + size: 145778 + nfiles: 6 + train_spatial@vivit: + cmd: uv run python scripts/train_ablation.py --train-dir + data/05_model_input/train --val-dir data/05_model_input/val --output-dir + data/06_models/spatial_vivit --params-path params.yaml --params-key + train_spatial_vivit + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train_ablation.py + hash: md5 + md5: 4183862a7b58d1a33f4a49f30bdc2d92 + size: 4858 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - 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num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_spatial_vivit: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: vivit + outs: + - path: data/06_models/spatial_vivit + hash: md5 + md5: 54028b5520975a36c70ad309d423317d.dir + size: 177496976 + nfiles: 5 + evaluate_spatial@vivit-train: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/train --checkpoint + data/06_models/spatial_vivit/best_checkpoint.pt --output-dir + data/08_reporting/spatial_vivit/train --params-path params.yaml + --params-key train_spatial_vivit + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/spatial_vivit + hash: md5 + md5: 54028b5520975a36c70ad309d423317d.dir + size: 177496976 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: 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size: 588770 + nfiles: 6 + evaluate_spatial@convlstm-train: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/train --checkpoint + data/06_models/spatial_convlstm/best_checkpoint.pt --output-dir + data/08_reporting/spatial_convlstm/train --params-path params.yaml + --params-key train_spatial_convlstm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/spatial_convlstm + hash: md5 + md5: fb715017498a5656597aef62fe5b8b9e.dir + size: 103970301 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: 76a76ab01092ab2c2215724c9c0155e7 + size: 13357 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_spatial_convlstm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: convlstm + outs: + - path: data/08_reporting/spatial_convlstm/train + hash: md5 + md5: 5479a2406a060866fa7cfd992e60efcd.dir + size: 587399 + nfiles: 6 + evaluate_spatial@convlstm-val: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/spatial_convlstm/best_checkpoint.pt --output-dir + data/08_reporting/spatial_convlstm/val --params-path params.yaml + --params-key train_spatial_convlstm + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/spatial_convlstm + hash: md5 + md5: fb715017498a5656597aef62fe5b8b9e.dir + size: 103970301 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py 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+ max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: convlstm + outs: + - path: data/08_reporting/spatial_convlstm/val + hash: md5 + md5: 1573f06f3500a52a95e484fb62451c24.dir + size: 149608 + nfiles: 6 + evaluate_spatial@tsm-train: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/train --checkpoint + data/06_models/spatial_tsm/best_checkpoint.pt --output-dir + data/08_reporting/spatial_tsm/train --params-path params.yaml --params-key + train_spatial_tsm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/spatial_tsm + hash: md5 + md5: 3a18c01dad1a009114e8d9431eefd902.dir + size: 92160971 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: 76a76ab01092ab2c2215724c9c0155e7 + size: 13357 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_spatial_tsm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: tsm + outs: + - path: data/08_reporting/spatial_tsm/train + hash: md5 + md5: b12e390c487af8c8777d7068b5353a21.dir + size: 587641 + nfiles: 6 + evaluate_spatial@resnet3d-train: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/train --checkpoint + data/06_models/spatial_resnet3d/best_checkpoint.pt --output-dir + data/08_reporting/spatial_resnet3d/train --params-path params.yaml + --params-key train_spatial_resnet3d + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/spatial_resnet3d + hash: md5 + md5: dd66eec446fbc17992fc4e162546dcf2.dir + size: 487058223 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/lit_ablation.py + hash: md5 + md5: 76a76ab01092ab2c2215724c9c0155e7 + size: 13357 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_spatial_resnet3d: + max_frames: 16 + batch_size: 8 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + encoder_kind: resnet3d + outs: + - path: data/08_reporting/spatial_resnet3d/train + hash: md5 + md5: e1521609bc185e6393cde3a30e21f06e.dir + size: 582724 + nfiles: 6 + evaluate_spatial@vivit-val: + cmd: uv run python scripts/evaluate_ablation.py --data-dir + data/05_model_input/val --checkpoint + data/06_models/spatial_vivit/best_checkpoint.pt --output-dir + data/08_reporting/spatial_vivit/val --params-path params.yaml --params-key + train_spatial_vivit + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/spatial_vivit + hash: md5 + md5: 54028b5520975a36c70ad309d423317d.dir + size: 177496976 + nfiles: 5 + - path: scripts/evaluate_ablation.py + hash: md5 + md5: c3c9a3d0195471eb287ebd4a21b4321e + size: 5231 + - path: src/tube_multiscale_fusion/ablation_classifier.py + hash: md5 + md5: d3feb508e850de3db730be7b10564d3a + size: 8872 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 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local_branch_section: local_branch + query_dim: 384 + encoder_kind: vivit + outs: + - path: data/08_reporting/spatial_vivit/val + hash: md5 + md5: 3fbed2834ebdea2548c95db5768ad94f.dir + size: 147439 + nfiles: 6 + train_full_combo@resnet3d_transformer: + cmd: uv run python scripts/train.py --train-dir data/05_model_input/train + --val-dir data/05_model_input/val --output-dir + data/06_models/full_resnet3d_transformer --params-path params.yaml + --params-key train_full_resnet3d_transformer + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train.py + hash: md5 + md5: 3667951a8552a76e225529893e875118 + size: 5579 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: 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subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_resnet3d_transformer: + max_frames: 16 + batch_size: 8 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: resnet3d + aggregator_kind: transformer + outs: + - path: data/06_models/full_resnet3d_transformer + hash: md5 + md5: b3b4d732446e73edca34ebe7947521d2.dir + size: 630529606 + nfiles: 5 + train_full_combo@vivit_lstm: + cmd: uv run python scripts/train.py --train-dir data/05_model_input/train + --val-dir data/05_model_input/val --output-dir + data/06_models/full_vivit_lstm --params-path params.yaml --params-key + train_full_vivit_lstm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train.py + hash: md5 + md5: 3667951a8552a76e225529893e875118 + size: 5579 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 84fd9cfc9373647c93c6aed124ea8544 + size: 3799 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: 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global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_vivit_lstm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: vivit + aggregator_kind: lstm + outs: + - path: data/06_models/full_vivit_lstm + hash: md5 + md5: 60642e41db832623aff0d1c536015c94.dir + size: 292493642 + nfiles: 5 + evaluate_full_combo@vivit_lstm-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint data/06_models/full_vivit_lstm/best_checkpoint.pt + --output-dir data/08_reporting/full_vivit_lstm/val --params-path + params.yaml --params-key train_full_vivit_lstm + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/full_vivit_lstm + hash: md5 + md5: 60642e41db832623aff0d1c536015c94.dir + size: 292493642 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 84fd9cfc9373647c93c6aed124ea8544 + size: 3799 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: 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head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: vivit + aggregator_kind: lstm + outs: + - path: data/08_reporting/full_vivit_lstm/val + hash: md5 + md5: 022530ad6392a37a45e3ef3f9e7e8062.dir + size: 140842 + nfiles: 6 + evaluate_full_combo@resnet3d_transformer-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint data/06_models/full_resnet3d_transformer/best_checkpoint.pt + --output-dir data/08_reporting/full_resnet3d_transformer/val --params-path + params.yaml --params-key train_full_resnet3d_transformer + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/full_resnet3d_transformer + hash: md5 + md5: b3b4d732446e73edca34ebe7947521d2.dir + size: 630529606 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + 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backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_resnet3d_transformer: + max_frames: 16 + batch_size: 8 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: resnet3d + aggregator_kind: transformer + outs: + - path: data/08_reporting/full_resnet3d_transformer/val + hash: md5 + md5: e48d9db3fbd387e541febab0fc669a83.dir + size: 145075 + nfiles: 6 + train_full_combo@vivit_transformer: + cmd: uv run python scripts/train.py --train-dir data/05_model_input/train + --val-dir data/05_model_input/val --output-dir + data/06_models/full_vivit_transformer --params-path params.yaml + --params-key train_full_vivit_transformer + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train.py + hash: md5 + md5: 3667951a8552a76e225529893e875118 + size: 5579 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 84fd9cfc9373647c93c6aed124ea8544 + size: 3799 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: 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cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_vivit_transformer: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: vivit + aggregator_kind: transformer + outs: + - path: data/06_models/full_vivit_transformer + hash: md5 + md5: 66e6f23985f3622554b2f80b6973f417.dir + size: 320986427 + nfiles: 5 + evaluate_full_combo@vivit_transformer-train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint data/06_models/full_vivit_transformer/best_checkpoint.pt + --output-dir data/08_reporting/full_vivit_transformer/train --params-path + params.yaml --params-key train_full_vivit_transformer + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/full_vivit_transformer + hash: md5 + md5: 66e6f23985f3622554b2f80b6973f417.dir + size: 320986427 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 84fd9cfc9373647c93c6aed124ea8544 + size: 3799 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + 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224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: vivit + aggregator_kind: transformer + outs: + - path: data/08_reporting/full_vivit_transformer/train + hash: md5 + md5: 761548e996d7958f02e0e23dccf96299.dir + size: 581647 + nfiles: 6 + train_full_combo@resnet3d_lstm: + cmd: uv run python scripts/train.py --train-dir data/05_model_input/train + --val-dir data/05_model_input/val --output-dir + data/06_models/full_resnet3d_lstm --params-path params.yaml --params-key + train_full_resnet3d_lstm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: scripts/train.py + hash: md5 + md5: 3667951a8552a76e225529893e875118 + size: 5579 + - path: src/tube_multiscale_fusion/augment.py + hash: md5 + md5: f52a42f92caa2fac859bf3a81a18971d + size: 9489 + - 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subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_resnet3d_lstm: + max_frames: 16 + batch_size: 8 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: resnet3d + aggregator_kind: lstm + outs: + - path: data/06_models/full_resnet3d_lstm + hash: md5 + md5: bd3c2c20b3ba98c4ee190a35f47348aa.dir + size: 602043193 + nfiles: 5 + evaluate_full_combo@resnet3d_transformer-train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint data/06_models/full_resnet3d_transformer/best_checkpoint.pt + --output-dir data/08_reporting/full_resnet3d_transformer/train + --params-path params.yaml --params-key train_full_resnet3d_transformer + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/full_resnet3d_transformer + hash: md5 + md5: b3b4d732446e73edca34ebe7947521d2.dir + size: 630529606 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 84fd9cfc9373647c93c6aed124ea8544 + size: 3799 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 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num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_resnet3d_transformer: + max_frames: 16 + batch_size: 8 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: resnet3d + aggregator_kind: transformer + outs: + - path: data/08_reporting/full_resnet3d_transformer/train + hash: md5 + md5: eafeee929e04ea55c6f062d63e01223c.dir + size: 583129 + nfiles: 6 + train_full_combo@tubelet_lstm: + cmd: uv run python scripts/train.py --train-dir data/05_model_input/train + --val-dir data/05_model_input/val --output-dir + data/06_models/full_tubelet_lstm --params-path params.yaml --params-key + train_full_tubelet_lstm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + 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6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: + - 0.9 + - 1.1 + translate_frac: 0.05 + photometric: + brightness_range: + - 0.8 + - 1.2 + contrast_range: + - 0.8 + - 1.2 + saturation_range: + - 0.8 + - 1.2 + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_tubelet_lstm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: tubelet_transformer + aggregator_kind: lstm + outs: + - path: data/06_models/full_tubelet_lstm + hash: md5 + md5: fb580c9abddb74b6c5230f159ec1505b.dir + size: 250181395 + nfiles: 5 + evaluate_full_combo@tubelet_lstm-train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint data/06_models/full_tubelet_lstm/best_checkpoint.pt + --output-dir data/08_reporting/full_tubelet_lstm/train --params-path + params.yaml --params-key train_full_tubelet_lstm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/full_tubelet_lstm + hash: md5 + md5: fb580c9abddb74b6c5230f159ec1505b.dir + size: 250181395 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+ ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_tubelet_lstm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: tubelet_transformer + aggregator_kind: lstm + outs: + - path: data/08_reporting/full_tubelet_lstm/train + hash: md5 + md5: 18d0b799f9546abb89877e7253557d4a.dir + size: 579174 + nfiles: 6 + evaluate_full_combo@resnet3d_lstm-train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint data/06_models/full_resnet3d_lstm/best_checkpoint.pt + --output-dir data/08_reporting/full_resnet3d_lstm/train --params-path + params.yaml --params-key train_full_resnet3d_lstm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/full_resnet3d_lstm + hash: md5 + md5: bd3c2c20b3ba98c4ee190a35f47348aa.dir + size: 602043193 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 84fd9cfc9373647c93c6aed124ea8544 + size: 3799 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_module.py + hash: md5 + md5: eb2bf5c272592ac2bc5236c8b356ad36 + size: 7488 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_resnet3d_lstm: + max_frames: 16 + batch_size: 8 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: resnet3d + aggregator_kind: lstm + outs: + - path: data/08_reporting/full_resnet3d_lstm/train + hash: md5 + md5: 29b8ab208d72ea0da70472b804d90ae0.dir + size: 582690 + nfiles: 6 + evaluate_full_combo@vivit_lstm-train: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/train + --checkpoint data/06_models/full_vivit_lstm/best_checkpoint.pt + --output-dir data/08_reporting/full_vivit_lstm/train --params-path + params.yaml --params-key train_full_vivit_lstm + deps: + - path: data/05_model_input/train + hash: md5 + md5: 840f6c912a4c6ae3103627dd32594242.dir + size: 843667150 + nfiles: 34039 + - path: data/06_models/full_vivit_lstm + hash: md5 + md5: 60642e41db832623aff0d1c536015c94.dir + size: 292493642 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 84fd9cfc9373647c93c6aed124ea8544 + size: 3799 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_module.py + hash: md5 + md5: eb2bf5c272592ac2bc5236c8b356ad36 + size: 7488 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_vivit_lstm: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: vivit + aggregator_kind: lstm + outs: + - path: data/08_reporting/full_vivit_lstm/train + hash: md5 + md5: 08acf87dd2eb76d9e0aaac6bbf24d1e0.dir + size: 580171 + nfiles: 6 + evaluate_full_combo@tubelet_lstm-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint data/06_models/full_tubelet_lstm/best_checkpoint.pt + --output-dir data/08_reporting/full_tubelet_lstm/val --params-path + params.yaml --params-key train_full_tubelet_lstm + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/full_tubelet_lstm + hash: md5 + md5: fb580c9abddb74b6c5230f159ec1505b.dir + size: 250181395 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 84fd9cfc9373647c93c6aed124ea8544 + size: 3799 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 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max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: tubelet_transformer + aggregator_kind: lstm + outs: + - path: data/08_reporting/full_tubelet_lstm/val + hash: md5 + md5: abf684fc89f0b53def2bc770b46d73e3.dir + size: 141389 + nfiles: 6 + evaluate_full_combo@vivit_transformer-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint data/06_models/full_vivit_transformer/best_checkpoint.pt + --output-dir data/08_reporting/full_vivit_transformer/val --params-path + params.yaml --params-key train_full_vivit_transformer + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/full_vivit_transformer + hash: md5 + md5: 66e6f23985f3622554b2f80b6973f417.dir + size: 320986427 + 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ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_vivit_transformer: + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: vivit + aggregator_kind: transformer + outs: + - path: data/08_reporting/full_vivit_transformer/val + hash: md5 + md5: 840500caf46fb58f9a65acba4cd19666.dir + size: 142970 + nfiles: 6 + evaluate_full_combo@resnet3d_lstm-val: + cmd: uv run python scripts/evaluate.py --data-dir data/05_model_input/val + --checkpoint data/06_models/full_resnet3d_lstm/best_checkpoint.pt + --output-dir data/08_reporting/full_resnet3d_lstm/val --params-path + params.yaml --params-key train_full_resnet3d_lstm + deps: + - path: data/05_model_input/val + hash: md5 + md5: f8585e64f607a7a8d7d1651a9cbc930e.dir + size: 77725173 + nfiles: 3219 + - path: data/06_models/full_resnet3d_lstm + hash: md5 + md5: bd3c2c20b3ba98c4ee190a35f47348aa.dir + size: 602043193 + nfiles: 5 + - path: scripts/evaluate.py + hash: md5 + md5: 44cba928007046cc57341989cd752879 + size: 5231 + - path: src/tube_multiscale_fusion/classifier.py + hash: md5 + md5: 84fd9cfc9373647c93c6aed124ea8544 + size: 3799 + - path: src/tube_multiscale_fusion/dataset.py + hash: md5 + md5: d7d3e37c27fd25f7612751b3c5869dd2 + size: 3036 + - path: src/tube_multiscale_fusion/eval_plots.py + hash: md5 + md5: f76a38b124a936129d9e0cc6910b9e33 + size: 3399 + - path: src/tube_multiscale_fusion/fusion.py + hash: md5 + md5: 695dd2af05cb3a47cc3387c9c4ba210d + size: 7308 + - path: src/tube_multiscale_fusion/global_branch.py + hash: md5 + md5: 22bcbb284170752ff61a781a6119a474 + size: 11333 + - path: src/tube_multiscale_fusion/lit_module.py + hash: md5 + md5: eb2bf5c272592ac2bc5236c8b356ad36 + size: 7488 + - path: src/tube_multiscale_fusion/local_branch.py + hash: md5 + md5: 6fddb4c6db1fcb59c61261bed915b693 + size: 19137 + params: + params.yaml: + fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + global_branch: + backbone: vit_small_patch14_dinov2.lvd142m + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + local_branch: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + train_full_resnet3d_lstm: + max_frames: 16 + batch_size: 8 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 1e-05 + encoder_kind: resnet3d + aggregator_kind: lstm + outs: + - path: data/08_reporting/full_resnet3d_lstm/val + hash: md5 + md5: d0727f5e83698e08ecfac2c7b195877d.dir + size: 143196 + nfiles: 6 diff --git a/experiments/temporal-models/tube-multiscale-fusion/dvc.yaml b/experiments/temporal-models/tube-multiscale-fusion/dvc.yaml new file mode 100644 index 00000000..7dfb5867 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/dvc.yaml @@ -0,0 +1,651 @@ +stages: + prepare: + desc: "Download YOLO detector weights from HuggingFace Hub (serving companion)" + cmd: >- + uv run python scripts/prepare.py + --model-repo ${prepare.model_repo} + --model-filename ${prepare.model_filename} + --output-model-dir data/01_raw/models + deps: + - scripts/prepare.py + params: + - prepare + outs: + - data/01_raw/models + + truncate: + foreach: + - train + - val + do: + cmd: >- + uv run python scripts/truncate_sequences.py + --input-dir data/01_raw/datasets_full/${item} + --output-dir data/01_raw/datasets/${item} + --max-frames ${truncate.max_frames} + deps: + - scripts/truncate_sequences.py + - data/01_raw/datasets_full/${item} + params: + - truncate.max_frames + outs: + - data/01_raw/datasets/${item} + + build_tubes: + foreach: + - train + - val + do: + cmd: >- + uv run python scripts/build_tubes.py + --input-dir data/01_raw/datasets/${item} + --output-dir data/03_primary/tubes/${item} + --iou-threshold ${tubes.iou_threshold} + --max-misses ${tubes.max_misses} + --min-tube-length ${build_tubes.min_tube_length} + --min-detected-entries ${build_tubes.min_detected_entries} + deps: + - scripts/build_tubes.py + - data/01_raw/datasets/${item} + params: + - tubes + - build_tubes + outs: + - data/03_primary/tubes/${item} + + build_model_input: + foreach: + - train + - val + do: + cmd: >- + uv run python scripts/build_model_input.py + --tubes-dir data/03_primary/tubes/${item} + --raw-dir data/01_raw/datasets/${item} + --output-dir data/05_model_input/${item} + --context-factor ${model_input.context_factor} + --patch-size ${model_input.patch_size} + deps: + - scripts/build_model_input.py + - data/03_primary/tubes/${item} + - data/01_raw/datasets/${item} + params: + - model_input + outs: + - data/05_model_input/${item} + + train_dinov2_multiscale: + cmd: >- + uv run python scripts/train.py + --train-dir data/05_model_input/train + --val-dir data/05_model_input/val + --output-dir data/06_models/dinov2_multiscale + --params-path params.yaml + --params-key train_dinov2_multiscale + deps: + - scripts/train.py + - src/tube_multiscale_fusion/augment.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/classifier.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/lit_module.py + - data/05_model_input/train + - data/05_model_input/val + params: + - train_dinov2_multiscale + - global_branch + - local_branch + - fusion + - augment + outs: + - data/06_models/dinov2_multiscale + + # --------------------------------------------------------------------------- + # Ablation: full model minus the temporal module (global DINOv2 branch). + # Local branch + fusion are identical to the default model. + # --------------------------------------------------------------------------- + train_ablation_no_temporal: + cmd: >- + uv run python scripts/train_ablation.py + --train-dir data/05_model_input/train + --val-dir data/05_model_input/val + --output-dir data/06_models/ablation_no_temporal + --params-path params.yaml + --params-key train_ablation_no_temporal + deps: + - scripts/train_ablation.py + - src/tube_multiscale_fusion/augment.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - data/05_model_input/train + - data/05_model_input/val + params: + - train_ablation_no_temporal + - local_branch + - fusion + - augment + outs: + - data/06_models/ablation_no_temporal + + evaluate_ablation_no_temporal: + foreach: + - train + - val + do: + cmd: >- + uv run python scripts/evaluate_ablation.py + --data-dir data/05_model_input/${item} + --checkpoint data/06_models/ablation_no_temporal/best_checkpoint.pt + --output-dir data/08_reporting/ablation_no_temporal/${item} + --params-path params.yaml + --params-key train_ablation_no_temporal + deps: + - scripts/evaluate_ablation.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - src/tube_multiscale_fusion/eval_plots.py + - data/05_model_input/${item} + - data/06_models/ablation_no_temporal + params: + - train_ablation_no_temporal + - local_branch + - fusion + outs: + - data/08_reporting/ablation_no_temporal/${item} + + # --------------------------------------------------------------------------- + # Ablation: remove the spatial module (global branch only). + # --------------------------------------------------------------------------- + train_ablation_no_spatial: + cmd: >- + uv run python scripts/train_ablation_global.py + --train-dir data/05_model_input/train + --val-dir data/05_model_input/val + --output-dir data/06_models/ablation_no_spatial + --params-path params.yaml + --params-key train_ablation_no_spatial + deps: + - scripts/train_ablation_global.py + - src/tube_multiscale_fusion/augment.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - data/05_model_input/train + - data/05_model_input/val + params: + - train_ablation_no_spatial + - global_branch + - augment + outs: + - data/06_models/ablation_no_spatial + + evaluate_ablation_no_spatial: + foreach: + - train + - val + do: + cmd: >- + uv run python scripts/evaluate_ablation_global.py + --data-dir data/05_model_input/${item} + --checkpoint data/06_models/ablation_no_spatial/best_checkpoint.pt + --output-dir data/08_reporting/ablation_no_spatial/${item} + --params-path params.yaml + --params-key train_ablation_no_spatial + deps: + - scripts/evaluate_ablation_global.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - src/tube_multiscale_fusion/eval_plots.py + - data/05_model_input/${item} + - data/06_models/ablation_no_spatial + params: + - train_ablation_no_spatial + - global_branch + outs: + - data/08_reporting/ablation_no_spatial/${item} + + # --------------------------------------------------------------------------- + # Ablation: cross-attention fusion -> weighted means (both branches kept). + # --------------------------------------------------------------------------- + train_ablation_weighted_mean: + cmd: >- + uv run python scripts/train_ablation_global.py + --train-dir data/05_model_input/train + --val-dir data/05_model_input/val + --output-dir data/06_models/ablation_weighted_mean + --params-path params.yaml + --params-key train_ablation_weighted_mean + deps: + - scripts/train_ablation_global.py + - src/tube_multiscale_fusion/augment.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - data/05_model_input/train + - data/05_model_input/val + params: + - train_ablation_weighted_mean + - global_branch + - local_branch + - fusion + - augment + outs: + - data/06_models/ablation_weighted_mean + + evaluate_ablation_weighted_mean: + foreach: + - train + - val + do: + cmd: >- + uv run python scripts/evaluate_ablation_global.py + --data-dir data/05_model_input/${item} + --checkpoint data/06_models/ablation_weighted_mean/best_checkpoint.pt + --output-dir data/08_reporting/ablation_weighted_mean/${item} + --params-path params.yaml + --params-key train_ablation_weighted_mean + deps: + - scripts/evaluate_ablation_global.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - src/tube_multiscale_fusion/eval_plots.py + - data/05_model_input/${item} + - data/06_models/ablation_weighted_mean + params: + - train_ablation_weighted_mean + - global_branch + - local_branch + - fusion + outs: + - data/08_reporting/ablation_weighted_mean/${item} + + # --------------------------------------------------------------------------- + # Temporal-module comparison — global-only, varying the aggregator. + # (Transformer baseline = train/evaluate_ablation_no_spatial above.) + # --------------------------------------------------------------------------- + train_temporal: + matrix: + agg: + - lstm + - gru + - mlp + - conv1d + - linear_wavg + cmd: >- + uv run python scripts/train_ablation_global.py + --train-dir data/05_model_input/train + --val-dir data/05_model_input/val + --output-dir data/06_models/temporal_${item.agg} + --params-path params.yaml + --params-key train_temporal_${item.agg} + deps: + - scripts/train_ablation_global.py + - src/tube_multiscale_fusion/augment.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - data/05_model_input/train + - data/05_model_input/val + params: + - train_temporal_${item.agg} + - global_branch + - augment + outs: + - data/06_models/temporal_${item.agg} + + evaluate_temporal: + matrix: + agg: + - lstm + - gru + - mlp + - conv1d + - linear_wavg + split: + - train + - val + cmd: >- + uv run python scripts/evaluate_ablation_global.py + --data-dir data/05_model_input/${item.split} + --checkpoint data/06_models/temporal_${item.agg}/best_checkpoint.pt + --output-dir data/08_reporting/temporal_${item.agg}/${item.split} + --params-path params.yaml + --params-key train_temporal_${item.agg} + deps: + - scripts/evaluate_ablation_global.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - src/tube_multiscale_fusion/eval_plots.py + - data/05_model_input/${item.split} + - data/06_models/temporal_${item.agg} + params: + - train_temporal_${item.agg} + - global_branch + outs: + - data/08_reporting/temporal_${item.agg}/${item.split} + + # --------------------------------------------------------------------------- + # Spatial-module comparison — local-only, varying the per-tube encoder. + # (Tubelet-transformer baseline = train/evaluate_ablation_no_temporal above.) + # --------------------------------------------------------------------------- + train_spatial: + matrix: + enc: + - resnet3d + - vivit + - convlstm + - tsm + cmd: >- + uv run python scripts/train_ablation.py + --train-dir data/05_model_input/train + --val-dir data/05_model_input/val + --output-dir data/06_models/spatial_${item.enc} + --params-path params.yaml + --params-key train_spatial_${item.enc} + deps: + - scripts/train_ablation.py + - src/tube_multiscale_fusion/augment.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - data/05_model_input/train + - data/05_model_input/val + params: + - train_spatial_${item.enc} + - local_branch + - fusion + - augment + outs: + - data/06_models/spatial_${item.enc} + + evaluate_spatial: + matrix: + enc: + - resnet3d + - vivit + - convlstm + - tsm + split: + - train + - val + cmd: >- + uv run python scripts/evaluate_ablation.py + --data-dir data/05_model_input/${item.split} + --checkpoint data/06_models/spatial_${item.enc}/best_checkpoint.pt + --output-dir data/08_reporting/spatial_${item.enc}/${item.split} + --params-path params.yaml + --params-key train_spatial_${item.enc} + deps: + - scripts/evaluate_ablation.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/ablation_classifier.py + - src/tube_multiscale_fusion/lit_ablation.py + - src/tube_multiscale_fusion/eval_plots.py + - data/05_model_input/${item.split} + - data/06_models/spatial_${item.enc} + params: + - train_spatial_${item.enc} + - local_branch + - fusion + outs: + - data/08_reporting/spatial_${item.enc}/${item.split} + + # --------------------------------------------------------------------------- + # Combined variations — full model, spatial x temporal cartesian product. + # (tubelet x transformer = train/evaluate_dinov2_multiscale above.) + # --------------------------------------------------------------------------- + train_full_combo: + matrix: + combo: + - resnet3d_lstm + - resnet3d_transformer + - vivit_lstm + - vivit_transformer + - tubelet_lstm + cmd: >- + uv run python scripts/train.py + --train-dir data/05_model_input/train + --val-dir data/05_model_input/val + --output-dir data/06_models/full_${item.combo} + --params-path params.yaml + --params-key train_full_${item.combo} + deps: + - scripts/train.py + - src/tube_multiscale_fusion/augment.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/classifier.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/lit_module.py + - data/05_model_input/train + - data/05_model_input/val + params: + - train_full_${item.combo} + - global_branch + - local_branch + - fusion + - augment + outs: + - data/06_models/full_${item.combo} + + evaluate_full_combo: + matrix: + combo: + - resnet3d_lstm + - resnet3d_transformer + - vivit_lstm + - vivit_transformer + - tubelet_lstm + split: + - train + - val + cmd: >- + uv run python scripts/evaluate.py + --data-dir data/05_model_input/${item.split} + --checkpoint data/06_models/full_${item.combo}/best_checkpoint.pt + --output-dir data/08_reporting/full_${item.combo}/${item.split} + --params-path params.yaml + --params-key train_full_${item.combo} + deps: + - scripts/evaluate.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/classifier.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/lit_module.py + - src/tube_multiscale_fusion/eval_plots.py + - data/05_model_input/${item.split} + - data/06_models/full_${item.combo} + params: + - train_full_${item.combo} + - global_branch + - local_branch + - fusion + outs: + - data/08_reporting/full_${item.combo}/${item.split} + + benchmark_dinov2_multiscale: + cmd: >- + uv run python scripts/benchmark.py + --data-dir data/05_model_input/val + --checkpoint data/06_models/dinov2_multiscale/best_checkpoint.pt + --predictions data/08_reporting/dinov2_multiscale/val/predictions.json + --output data/08_reporting/dinov2_multiscale_benchmark/benchmark.json + deps: + - scripts/benchmark.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/classifier.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/lit_module.py + - data/05_model_input/val + - data/06_models/dinov2_multiscale + - data/08_reporting/dinov2_multiscale/val + params: + - train_dinov2_multiscale + - global_branch + - local_branch + - fusion + metrics: + - data/08_reporting/dinov2_multiscale_benchmark/benchmark.json: + cache: false + + evaluate_dinov2_multiscale: + foreach: + - train + - val + do: + cmd: >- + uv run python scripts/evaluate.py + --data-dir data/05_model_input/${item} + --checkpoint data/06_models/dinov2_multiscale/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale/${item} + --params-path params.yaml + --params-key train_dinov2_multiscale + deps: + - scripts/evaluate.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/classifier.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/lit_module.py + - src/tube_multiscale_fusion/eval_plots.py + - data/05_model_input/${item} + - data/06_models/dinov2_multiscale + params: + - train_dinov2_multiscale + - global_branch + - local_branch + - fusion + outs: + - data/08_reporting/dinov2_multiscale/${item} + + # --------------------------------------------------------------------------- + # Resolution sweep — same architecture, different local_branch geometry. + # --------------------------------------------------------------------------- + train_dinov2_multiscale_sweep: + matrix: + variant: + - spatial_4x4 + - spatial_8x8 + - temporal_stride1 + - temporal_len8 + cmd: >- + uv run python scripts/train.py + --train-dir data/05_model_input/train + --val-dir data/05_model_input/val + --output-dir data/06_models/dinov2_multiscale_${item.variant} + --params-path params.yaml + --params-key train_dinov2_multiscale_${item.variant} + deps: + - scripts/train.py + - src/tube_multiscale_fusion/augment.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/classifier.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/lit_module.py + - data/05_model_input/train + - data/05_model_input/val + params: + - train_dinov2_multiscale_${item.variant} + - global_branch + - local_branch_${item.variant} + - fusion + - augment + outs: + - data/06_models/dinov2_multiscale_${item.variant} + + package_dinov2_multiscale: + cmd: >- + uv run python scripts/package_model.py + --checkpoint data/06_models/dinov2_multiscale/best_checkpoint.pt + --params-path params.yaml + --params-key train_dinov2_multiscale + --yolo-weights-path data/01_raw/models/best.pt + --val-patches-dir data/05_model_input/val + --output data/07_model_output/dinov2_multiscale/model_package.zip + deps: + - scripts/package_model.py + - src/tube_multiscale_fusion/package.py + - src/tube_multiscale_fusion/model.py + - data/06_models/dinov2_multiscale + - data/01_raw/models/best.pt + - data/05_model_input/val + params: + - package + - tubes + - build_tubes + - model_input + - train_dinov2_multiscale + - global_branch + - local_branch + - fusion + outs: + - data/07_model_output/dinov2_multiscale/model_package.zip + + evaluate_dinov2_multiscale_sweep: + matrix: + variant: + - spatial_4x4 + - spatial_8x8 + - temporal_stride1 + - temporal_len8 + split: + - train + - val + cmd: >- + uv run python scripts/evaluate.py + --data-dir data/05_model_input/${item.split} + --checkpoint data/06_models/dinov2_multiscale_${item.variant}/best_checkpoint.pt + --output-dir data/08_reporting/dinov2_multiscale_${item.variant}/${item.split} + --params-path params.yaml + --params-key train_dinov2_multiscale_${item.variant} + deps: + - scripts/evaluate.py + - src/tube_multiscale_fusion/dataset.py + - src/tube_multiscale_fusion/classifier.py + - src/tube_multiscale_fusion/global_branch.py + - src/tube_multiscale_fusion/local_branch.py + - src/tube_multiscale_fusion/fusion.py + - src/tube_multiscale_fusion/lit_module.py + - src/tube_multiscale_fusion/eval_plots.py + - data/05_model_input/${item.split} + - data/06_models/dinov2_multiscale_${item.variant} + params: + - train_dinov2_multiscale_${item.variant} + - global_branch + - local_branch_${item.variant} + - fusion + outs: + - data/08_reporting/dinov2_multiscale_${item.variant}/${item.split} diff --git a/experiments/temporal-models/tube-multiscale-fusion/notebooks/.gitkeep b/experiments/temporal-models/tube-multiscale-fusion/notebooks/.gitkeep new file mode 100644 index 00000000..e69de29b diff --git a/experiments/temporal-models/tube-multiscale-fusion/params.yaml b/experiments/temporal-models/tube-multiscale-fusion/params.yaml new file mode 100644 index 00000000..2ddbd9af --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/params.yaml @@ -0,0 +1,356 @@ +# Keys prefixed with `_` are shared defaults consumed via YAML merge keys +# (`<<: *anchor`). They are NOT DVC stage parameters. + +prepare: + model_repo: "pyronear/yolo11s_nimble-narwhal_v6.0.0" + model_filename: "best.pt" + +truncate: + max_frames: 16 # the global branch resolution + +tubes: + iou_threshold: 0.2 + max_misses: 2 + +build_tubes: + min_tube_length: 4 + min_detected_entries: 2 + +model_input: + context_factor: 1.5 + patch_size: 224 + +# --------------------------------------------------------------------------- +# Serving / packaging — used by scripts/package_model.py to build the +# leaderboard-comparable model archive (YOLO companion + classifier + config). +# --------------------------------------------------------------------------- +package: + target_recall: 0.95 # decision threshold calibrated to this recall on val + infer_min_tube_length: 2 # smallest tube prefix scored at inference + infer: + confidence_threshold: 0.1 + iou_nms: 0.2 + image_size: 1024 + pad_to_min_frames: 16 # match truncate.max_frames / the global branch + pad_strategy: symmetric + +# --------------------------------------------------------------------------- +# Global branch: DINOv2 per-frame + sequence transformer aggregator. +# --------------------------------------------------------------------------- +global_branch: + backbone: vit_small_patch14_dinov2.lvd142m # feat_dim = 384 + aggregator: + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + +# --------------------------------------------------------------------------- +# Local branch: spatio-temporal tube extraction + video transformer encoder. +# +# Default geometry (winner of the resolution sweep): coarse 2x2 grid of +# 112x112 cells x overlapping 4-frame windows -> 7 windows * 4 cells = 28 +# tubes per sequence. See README.md for sweep table. +# --------------------------------------------------------------------------- +local_branch: + grid_size: 2 # 2x2 spatial grid -> cell_size = patch_size / grid_size = 112 + cell_size: 112 + tube_length: 4 + temporal_stride: 2 # 50% overlap (set to tube_length for no overlap) + encoder: + t_kernel: 2 # tubelet conv kernel along time + h_patch: 14 # tubelet conv kernel along height + w_patch: 14 # tubelet conv kernel along width + embed_dim: 384 # matches DINOv2 ViT-S feat_dim + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + +# --------------------------------------------------------------------------- +# Fusion: self-attn over locals + cross-attn (global=Q, locals=KV). +# --------------------------------------------------------------------------- +fusion: + d_fusion: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + +# --------------------------------------------------------------------------- +# Training variants +# --------------------------------------------------------------------------- +_train_defaults: &train_defaults + max_frames: 16 + batch_size: 16 + num_workers: 4 + learning_rate: 0.0001 + weight_decay: 0.05 + max_epochs: 30 + early_stop_patience: 5 + seed: 42 + head_hidden_dim: 256 + head_dropout: 0.1 + use_cosine_warmup: true + warmup_frac: 0.05 + img_size: 224 + +train_dinov2_multiscale: + <<: *train_defaults + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 0.00001 + +# --------------------------------------------------------------------------- +# Combined variations — full two-branch model, cartesian product of +# spatial (local encoder) x temporal (global aggregator). See +# COMBINED_VARIATIONS.md. The tubelet_transformer x transformer cell is the +# production default (= train_dinov2_multiscale above), reused there. +# --------------------------------------------------------------------------- +_full_combo_defaults: &full_combo_defaults + <<: *train_defaults + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 0.00001 + +train_full_resnet3d_lstm: + <<: *full_combo_defaults + encoder_kind: resnet3d + aggregator_kind: lstm + batch_size: 8 # r3d_18 local encoder over 28 tubes is memory-heavy + +train_full_resnet3d_transformer: + <<: *full_combo_defaults + encoder_kind: resnet3d + aggregator_kind: transformer + batch_size: 8 + +train_full_vivit_lstm: + <<: *full_combo_defaults + encoder_kind: vivit + aggregator_kind: lstm + +train_full_vivit_transformer: + <<: *full_combo_defaults + encoder_kind: vivit + aggregator_kind: transformer + +train_full_tubelet_lstm: + <<: *full_combo_defaults + encoder_kind: tubelet_transformer + aggregator_kind: lstm + +# --------------------------------------------------------------------------- +# Resolution sweep — alternative local_branch geometries kept as reference. +# +# Each block changes spatial grid and/or temporal slicing; the encoder +# tubelet kernel is sized to the cell so tubelet conv always emits at least +# one spatial token. Total tube count = n_temporal_windows * grid_size**2. +# --------------------------------------------------------------------------- + +# Baseline 4x4 grid of 56x56 cells -> 112 tubes/seq (previous default). +local_branch_spatial_4x4: + grid_size: 4 + cell_size: 56 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + +# Fine spatial (8x8 grid of 28x28 cells -> 448 tubes/seq with default time). +local_branch_spatial_8x8: + grid_size: 8 + cell_size: 28 + tube_length: 4 + temporal_stride: 2 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + +# Dense temporal (stride 1 -> 13 windows -> 52 tubes/seq with 2x2 spatial). +local_branch_temporal_stride1: + grid_size: 2 + cell_size: 112 + tube_length: 4 + temporal_stride: 1 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + +# Longer tubes, fewer windows (tube_length=8, stride=4 -> 3 windows -> 12 tubes/seq). +local_branch_temporal_len8: + grid_size: 2 + cell_size: 112 + tube_length: 8 + temporal_stride: 4 + encoder: + t_kernel: 2 + h_patch: 14 + w_patch: 14 + embed_dim: 384 + num_layers: 2 + num_heads: 6 + ffn_dim: 1536 + dropout: 0.1 + +train_dinov2_multiscale_spatial_4x4: + <<: *train_defaults + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 0.00001 + local_branch_section: local_branch_spatial_4x4 + +train_dinov2_multiscale_spatial_8x8: + <<: *train_defaults + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 0.00001 + local_branch_section: local_branch_spatial_8x8 + +train_dinov2_multiscale_temporal_stride1: + <<: *train_defaults + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 0.00001 + local_branch_section: local_branch_temporal_stride1 + +train_dinov2_multiscale_temporal_len8: + <<: *train_defaults + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 0.00001 + local_branch_section: local_branch_temporal_len8 + +# --------------------------------------------------------------------------- +# Ablation: full model MINUS the temporal module (global DINOv2 branch). +# +# Identical local_branch + fusion modules/hyperparameters as the default model; +# the global DINOv2 sequence branch is removed and its context vector into the +# fusion cross-attention is replaced by a learnable query token. Isolates the +# contribution of the global temporal context. Same 2x2 geometry as default. +# --------------------------------------------------------------------------- +train_ablation_no_temporal: + <<: *train_defaults + local_branch_section: local_branch + query_dim: 384 + +# Ablation: remove the SPATIAL module (local tube branch). Global branch only — +# DINOv2 per-frame + transformer aggregator -> MLP head. Keeps the global branch +# identical to the full model (incl. last-block fine-tuning). +train_ablation_no_spatial: + <<: *train_defaults + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 0.00001 + +# Ablation: replace the cross-attention FUSION with weighted means. Both branches +# kept identical to the full model; only the fusion module changes. +train_ablation_weighted_mean: + <<: *train_defaults + ablation_variant: weighted_mean + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 0.00001 + +# --------------------------------------------------------------------------- +# Temporal-module comparison — vary ONLY the global-branch aggregator, in the +# global-only (no_spatial) setting so the temporal module is isolated. The +# Transformer baseline is `train_ablation_no_spatial` above. See +# TEMPORAL_COMPARISON.md. +# --------------------------------------------------------------------------- +_temporal_defaults: &temporal_defaults + <<: *train_defaults + ablation_variant: no_spatial + finetune: true + finetune_last_n_blocks: 1 + backbone_lr: 0.00001 + +train_temporal_lstm: + <<: *temporal_defaults + aggregator_kind: lstm + +train_temporal_gru: + <<: *temporal_defaults + aggregator_kind: gru + +train_temporal_mlp: + <<: *temporal_defaults + aggregator_kind: mlp + +train_temporal_conv1d: + <<: *temporal_defaults + aggregator_kind: conv1d + +train_temporal_linear_wavg: + <<: *temporal_defaults + aggregator_kind: linear_wavg + +# --------------------------------------------------------------------------- +# Spatial-module comparison — vary ONLY the per-tube encoder, in the local-only +# (no_temporal) setting so the spatial module is isolated. The tubelet- +# transformer baseline is `train_ablation_no_temporal` above. See +# SPATIAL_COMPARISON.md. +# --------------------------------------------------------------------------- +_spatial_defaults: &spatial_defaults + <<: *train_defaults + ablation_variant: no_temporal + local_branch_section: local_branch + query_dim: 384 + +train_spatial_resnet3d: + <<: *spatial_defaults + encoder_kind: resnet3d + batch_size: 8 # r3d_18 over 28 tubes is memory-heavy + +train_spatial_vivit: + <<: *spatial_defaults + encoder_kind: vivit + +train_spatial_convlstm: + <<: *spatial_defaults + encoder_kind: convlstm + +train_spatial_tsm: + <<: *spatial_defaults + encoder_kind: tsm + +# --------------------------------------------------------------------------- +# Augmentation (RGB only) +# --------------------------------------------------------------------------- +augment: + enabled: true + spatial: + flip_prob: 0.5 + rotation_deg: 5.0 + scale_range: [0.9, 1.1] + translate_frac: 0.05 + photometric: + brightness_range: [0.8, 1.2] + contrast_range: [0.8, 1.2] + saturation_range: [0.8, 1.2] + temporal: + subseq_prob: 0.5 + subseq_min_len: 4 + stride_prob: 0.25 + frame_drop_prob: 0.15 + min_valid_after_drop: 4 diff --git a/experiments/temporal-models/tube-multiscale-fusion/pyproject.toml b/experiments/temporal-models/tube-multiscale-fusion/pyproject.toml new file mode 100644 index 00000000..d05d333c --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/pyproject.toml @@ -0,0 +1,61 @@ +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[tool.hatch.build.targets.wheel] +packages = ["src/tube_multiscale_fusion"] + +[project] +name = "tube-multiscale-fusion" +version = "0.1.0" +description = "Two-branch temporal smoke classifier: global DINOv2 sequence context + local spatio-temporal tube transformer, fused via cross-attention" +requires-python = ">=3.11" +dependencies = [ + "pyrocore", + "bbox-tube-temporal-core", + "lightning>=2.2", + "matplotlib>=3.8", + "numpy>=1.26,<2", + # Serving-path detector companion (tube_multiscale_fusion.model / package): + # ultralytics is imported directly; opencv-python-headless pins the cv2 + # build that loads in headless envs (full opencv-python fails on libGL). + "ultralytics>=8.3", + "opencv-python-headless>=4.8", + "pyyaml>=6.0", + "scikit-learn>=1.4", + "tensorboard>=2.16", + "timm>=1.0", + "torch>=2.2", + "torchvision>=0.17", + "tqdm>=4.66", + "huggingface-hub>=0.24", +] + +[tool.uv.sources] +pyrocore = { path = "../../../lib/pyrocore" } +bbox-tube-temporal-core = { path = "../../../lib/bbox-tube-temporal" } + +[dependency-groups] +dev = [ + "dvc[s3]>=3.56", + "jupyterlab>=4.0", + "nbqa>=1.9", + "nbstripout>=0.8", + "pytest>=8.0", + "ruff>=0.9", +] + +[tool.ruff] +target-version = "py311" +line-length = 88 + +[tool.ruff.lint] +select = ["E", "F", "I", "W", "UP", "B", "SIM", "PLC0415"] + +[tool.ruff.format] +quote-style = "double" + +[tool.pytest.ini_options] +markers = [ + "slow: tests that download large model weights (deselect with -m 'not slow')", +] diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/.gitkeep b/experiments/temporal-models/tube-multiscale-fusion/scripts/.gitkeep new file mode 100644 index 00000000..e69de29b diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/benchmark.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/benchmark.py new file mode 100644 index 00000000..22e02201 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/benchmark.py @@ -0,0 +1,227 @@ +"""Benchmark a trained tube-multiscale-fusion checkpoint. + +Computes the standardized Pyronear R&D metrics (see experiments/GUIDELINES.md): + + * Recall @ FPR -- tube-level recall at fixed false-positive rates + * Time-to-detection -- frames/seconds from tube start to first positive + classification, via prefix masking + * Inference latency -- milliseconds per sequence and per frame (GPU + CPU) + * Model size -- trainable / total parameter count and FLOPs + +Writes a JSON report and prints a human-readable summary. + +Example: + uv run python scripts/benchmark.py \\ + --data-dir data/05_model_input/val \\ + --checkpoint data/06_models/dinov2_multiscale/best_checkpoint.pt \\ + --predictions data/08_reporting/dinov2_multiscale/val/predictions.json \\ + --output data/08_reporting/dinov2_multiscale/val/benchmark.json +""" + +import argparse +import json +import re +import time +from datetime import datetime +from pathlib import Path + +import numpy as np +import torch +from sklearn.metrics import roc_curve +from torch.utils.flop_counter import FlopCounterMode + +from tube_multiscale_fusion.dataset import TubePatchDataset +from tube_multiscale_fusion.lit_module import LitTubeMultiscaleClassifier + +_TS_RE = re.compile(r"(\d{4}-\d{2}-\d{2}T\d{2}-\d{2}-\d{2})") + + +def _parse_ts(frame_id: str) -> datetime | None: + m = _TS_RE.search(frame_id) + if not m: + return None + try: + return datetime.strptime(m.group(1), "%Y-%m-%dT%H-%M-%S") + except ValueError: + return None + + +def recall_at_fpr(predictions: list[dict], fprs: list[float]) -> dict[str, float]: + """Tube-level recall at fixed false-positive rates from saved probabilities.""" + labels = np.array([p["truth"] for p in predictions]) + probs = np.array([p["prob"] for p in predictions]) + if labels.sum() == 0 or labels.sum() == len(labels): + return {f"recall@fpr={f}": float("nan") for f in fprs} + fpr, tpr, _ = roc_curve(labels, probs) + out: dict[str, float] = {} + for target in fprs: + # Highest TPR achievable without exceeding the target FPR. + feasible = tpr[fpr <= target] + out[f"recall@fpr={target}"] = float(feasible.max()) if len(feasible) else 0.0 + return out + + +def median_frame_dt_seconds(ds: TubePatchDataset) -> float: + """Median inter-frame interval across all sequences, from frame-id timestamps.""" + deltas: list[float] = [] + for rec in ds.index: + meta = json.loads((ds.split_dir / rec["sequence_id"] / "meta.json").read_text()) + ts = [_parse_ts(f["frame_id"]) for f in meta["frames"]] + ts = [t for t in ts if t is not None] + for a, b in zip(ts, ts[1:], strict=False): + deltas.append((b - a).total_seconds()) + return float(np.median(deltas)) if deltas else float("nan") + + +@torch.no_grad() +def time_to_detection( + lit: LitTubeMultiscaleClassifier, + ds: TubePatchDataset, + device: torch.device, + dt_seconds: float, + threshold: float = 0.5, +) -> dict[str, float]: + """For each positive tube, smallest prefix length whose prob >= threshold. + + Feeds increasing prefixes (k = 2..T frames) by masking later frames, exactly + the variable-length contract the model was trained with. The reported time is + ``(k_fire - 1) * dt`` -- elapsed wall-clock from the first tube frame to the + frame at which the classifier first crosses the threshold. + """ + lit.eval() + first_fire_frames: list[int] = [] + never_fired = 0 + n_pos = 0 + for i in range(len(ds)): + item = ds[i] + if int(item["label"].item()) != 1: + continue + n_pos += 1 + patches = item["patches"].unsqueeze(0).to(device) + base_mask = item["mask"] + n_valid = int(base_mask.sum().item()) + fired_at = None + for k in range(2, n_valid + 1): + mask_k = torch.zeros_like(base_mask) + mask_k[:k] = True + prob = torch.sigmoid(lit(patches, mask_k.unsqueeze(0).to(device))).item() + if prob >= threshold: + fired_at = k + break + if fired_at is None: + never_fired += 1 + else: + first_fire_frames.append(fired_at) + frames = np.array(first_fire_frames) if first_fire_frames else np.array([np.nan]) + return { + "n_positive": n_pos, + "n_detected": len(first_fire_frames), + "n_never_fired": never_fired, + "median_frames_to_detect": float(np.median(frames)), + "mean_frames_to_detect": float(np.mean(frames)), + "median_seconds_to_detect": float(np.median(frames) - 1) * dt_seconds, + "mean_seconds_to_detect": float(np.mean(frames) - 1) * dt_seconds, + "frame_dt_seconds": dt_seconds, + } + + +def model_size(lit: LitTubeMultiscaleClassifier, device: torch.device) -> dict: + total = sum(p.numel() for p in lit.model.parameters()) + trainable = sum(p.numel() for p in lit.model.parameters() if p.requires_grad) + x = torch.randn(1, 16, 3, 224, 224, device=device) + mask = torch.ones(1, 16, dtype=torch.bool, device=device) + lit.eval() + with FlopCounterMode(display=False) as fcm: + lit(x, mask) + total_flops = fcm.get_total_flops() + return { + "total_params": int(total), + "total_params_millions": round(total / 1e6, 2), + "trainable_params": int(trainable), + "trainable_params_millions": round(trainable / 1e6, 2), + "frozen_params_millions": round((total - trainable) / 1e6, 2), + "flops_per_sequence": int(total_flops), + "gflops_per_sequence": round(total_flops / 1e9, 1), + "gflops_per_frame": round(total_flops / 1e9 / 16, 2), + } + + +@torch.no_grad() +def latency( + lit: LitTubeMultiscaleClassifier, + device: torch.device, + n_warmup: int = 5, + n_iters: int = 30, +) -> dict[str, float]: + lit.eval() + x = torch.randn(1, 16, 3, 224, 224, device=device) + mask = torch.ones(1, 16, dtype=torch.bool, device=device) + for _ in range(n_warmup): + lit(x, mask) + if device.type == "cuda": + torch.cuda.synchronize() + times: list[float] = [] + for _ in range(n_iters): + t0 = time.perf_counter() + lit(x, mask) + if device.type == "cuda": + torch.cuda.synchronize() + times.append((time.perf_counter() - t0) * 1000.0) + arr = np.array(times) + return { + "ms_per_sequence_mean": float(arr.mean()), + "ms_per_sequence_std": float(arr.std()), + "ms_per_frame_mean": float(arr.mean() / 16), + } + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--data-dir", type=Path, required=True) + parser.add_argument("--checkpoint", type=Path, required=True) + parser.add_argument("--predictions", type=Path, required=True) + parser.add_argument("--output", type=Path, required=True) + parser.add_argument("--max-frames", type=int, default=16) + args = parser.parse_args() + + predictions = json.loads(args.predictions.read_text()) + ds = TubePatchDataset(args.data_dir, max_frames=args.max_frames) + + lit = LitTubeMultiscaleClassifier.load_from_checkpoint( + str(args.checkpoint), pretrained=False + ) + lit.eval() + + report: dict = {"hardware": {}} + gpu = torch.cuda.is_available() + report["hardware"]["gpu"] = torch.cuda.get_device_name(0) if gpu else None + report["hardware"]["cpu_threads"] = torch.get_num_threads() + + print("Computing recall @ FPR ...") + report["recall_at_fpr"] = recall_at_fpr(predictions, [0.01, 0.05, 0.1]) + + print("Computing model size + FLOPs ...") + size_device = torch.device("cuda" if gpu else "cpu") + lit.to(size_device) + report["model_size"] = model_size(lit, size_device) + + print("Computing time-to-detection (prefix masking) ...") + dt = median_frame_dt_seconds(ds) + report["time_to_detection"] = time_to_detection(lit, ds, size_device, dt) + + print("Measuring GPU latency ..." if gpu else "Skipping GPU latency (no CUDA)") + if gpu: + lit.to(torch.device("cuda")) + report["latency_gpu"] = latency(lit, torch.device("cuda")) + + print("Measuring CPU latency ...") + lit.to(torch.device("cpu")) + report["latency_cpu"] = latency(lit, torch.device("cpu")) + + args.output.parent.mkdir(parents=True, exist_ok=True) + args.output.write_text(json.dumps(report, indent=2)) + print(json.dumps(report, indent=2)) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/build_model_input.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/build_model_input.py new file mode 100644 index 00000000..45ab94dd --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/build_model_input.py @@ -0,0 +1,118 @@ +"""Crop tube bboxes from raw frames into 224x224 PNG patches per tube. + +For each tube JSON in ``--tubes-dir``, look up the source sequence +under ``--raw-dir`` and write a directory of cropped PNG frames + a +``meta.json`` to ``--output-dir//``. Also writes a +``_index.json`` listing all surviving tubes. + +Wipes ``--output-dir`` at the start so stale outputs don't linger. +""" + +import argparse +import json +import os +import shutil +from concurrent.futures import ProcessPoolExecutor, as_completed +from pathlib import Path + +from bbox_tube_temporal.model_input import LABEL_TO_INT, process_tube + + +def _process_one( + tube_path: Path, + raw_dir: Path, + out_dir: Path, + context_factor: float, + patch_size: int, +) -> tuple[str | None, str, str | None]: + """Worker: returns (sequence_id, label, error_or_none).""" + try: + record = json.loads(tube_path.read_text()) + sequence_id = record["sequence_id"] + label = record["label"] + process_tube( + tube_path=tube_path, + raw_dir=raw_dir, + out_dir=out_dir, + context_factor=context_factor, + patch_size=patch_size, + ) + return sequence_id, label, None + except Exception as exc: # noqa: BLE001 + return None, "", f"{tube_path.name}: {exc}" + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--tubes-dir", type=Path, required=True) + parser.add_argument("--raw-dir", type=Path, required=True) + parser.add_argument("--output-dir", type=Path, required=True) + parser.add_argument("--context-factor", type=float, required=True) + parser.add_argument("--patch-size", type=int, required=True) + parser.add_argument( + "--workers", + type=int, + default=0, + help="Number of worker processes (0 = os.cpu_count()).", + ) + args = parser.parse_args() + + workers = args.workers if args.workers > 0 else (os.cpu_count() or 1) + + if args.output_dir.exists(): + shutil.rmtree(args.output_dir) + args.output_dir.mkdir(parents=True, exist_ok=True) + + tube_paths = sorted( + p for p in args.tubes_dir.glob("*.json") if p.name != "_summary.json" + ) + + index: list[dict] = [] + errors: list[str] = [] + with ProcessPoolExecutor(max_workers=workers) as pool: + futures = [ + pool.submit( + _process_one, + p, + args.raw_dir, + args.output_dir, + args.context_factor, + args.patch_size, + ) + for p in tube_paths + ] + for fut in as_completed(futures): + sequence_id, label, err = fut.result() + if err is not None: + errors.append(err) + continue + assert sequence_id is not None + num_frames = len( + json.loads((args.output_dir / sequence_id / "meta.json").read_text())[ + "frames" + ] + ) + index.append( + { + "sequence_id": sequence_id, + "label_int": LABEL_TO_INT[label], + "num_frames": num_frames, + } + ) + + index.sort(key=lambda r: r["sequence_id"]) + (args.output_dir / "_index.json").write_text(json.dumps(index, indent=2)) + + split = args.tubes_dir.name + print( + f"[{split}] wrote {len(index)}/{len(tube_paths)} tubes " + f"with {workers} workers (errors={len(errors)})" + ) + for e in errors[:5]: + print(f" error: {e}") + if len(errors) > 5: + print(f" ... and {len(errors) - 5} more") + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/build_tubes.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/build_tubes.py new file mode 100644 index 00000000..96dc7b5b --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/build_tubes.py @@ -0,0 +1,195 @@ +"""Build per-sequence smoke tube JSON dataset from label .txt files. + +For each sequence under ``--input-dir/{wildfire,fp}/``: + +1. Load detections from labels (5-col GT for wildfire, 6-col YOLO for fp). +2. Build candidate tubes via greedy IoU matching. +3. Select the longest tube; tie-break by non-gap entries. +4. Geometrically interpolate gap bboxes. +5. Apply length / observation filters. +6. Write a JSON file per surviving sequence and a summary file with + per-split stats and dropped-sequence reasons. + +No YOLO inference is performed -- the labels carry everything we need. +""" + +import argparse +import json +from dataclasses import dataclass +from pathlib import Path + +from bbox_tube_temporal.data import ( + is_wf_sequence, + list_sequences, + load_frame_detections, +) +from bbox_tube_temporal.tubes import ( + build_tubes, + interpolate_gaps, + select_longest_tube, +) +from bbox_tube_temporal.types import Tube + + +@dataclass +class DropRecord: + sequence_id: str + reason: str + + +def _serialize_tube( + *, + sequence_id: str, + split: str, + label: str, + source: str, + num_frames: int, + tube: Tube, + frame_id_by_idx: dict[int, str], +) -> dict: + return { + "sequence_id": sequence_id, + "split": split, + "label": label, + "source": source, + "num_frames": num_frames, + "tube": { + "start_frame": tube.start_frame, + "end_frame": tube.end_frame, + "entries": [ + { + "frame_idx": e.frame_idx, + "frame_id": frame_id_by_idx.get(e.frame_idx, ""), + "bbox": [ + e.detection.cx, + e.detection.cy, + e.detection.w, + e.detection.h, + ] + if e.detection is not None + else None, + "is_gap": e.is_gap, + "confidence": e.detection.confidence + if e.detection is not None + else None, + } + for e in tube.entries + ], + }, + } + + +def _process_sequence( + seq_dir: Path, + *, + split: str, + iou_threshold: float, + max_misses: int, + min_tube_length: int, + min_detected_entries: int, +) -> tuple[dict | None, str | None]: + """Process a single sequence. + + Returns ``(record_or_None, drop_reason_or_None)``. + """ + is_wf = is_wf_sequence(seq_dir) + label = "smoke" if is_wf else "fp" + source = "gt" if is_wf else "yolo" + + if not (seq_dir / "labels").is_dir(): + return None, "no_labels_dir" + + fdets = load_frame_detections(seq_dir) + if not fdets: + return None, "no_frames" + + total_dets = sum(len(fd.detections) for fd in fdets) + if total_dets < min_detected_entries: + return None, "no_detections" + + tubes = build_tubes(fdets, iou_threshold=iou_threshold, max_misses=max_misses) + if not tubes: + return None, "no_tubes" + + selected = select_longest_tube(tubes) + assert selected is not None # tubes is non-empty + + length = selected.end_frame - selected.start_frame + 1 + if length < min_tube_length: + return None, "too_short" + + n_observed = sum(1 for e in selected.entries if e.detection is not None) + if n_observed < min_detected_entries: + return None, "too_few_observed" + + interpolate_gaps(selected) + + frame_id_by_idx = {fd.frame_idx: fd.frame_id for fd in fdets} + record = _serialize_tube( + sequence_id=seq_dir.name, + split=split, + label=label, + source=source, + num_frames=len(fdets), + tube=selected, + frame_id_by_idx=frame_id_by_idx, + ) + return record, None + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--input-dir", type=Path, required=True) + parser.add_argument("--output-dir", type=Path, required=True) + parser.add_argument("--iou-threshold", type=float, default=0.2) + parser.add_argument("--max-misses", type=int, default=2) + parser.add_argument("--min-tube-length", type=int, default=4) + parser.add_argument("--min-detected-entries", type=int, default=2) + args = parser.parse_args() + + split = args.input_dir.name + args.output_dir.mkdir(parents=True, exist_ok=True) + + seq_dirs = list_sequences(args.input_dir) + written = 0 + by_label: dict[str, int] = {"smoke": 0, "fp": 0} + dropped: list[DropRecord] = [] + + for seq_dir in seq_dirs: + record, reason = _process_sequence( + seq_dir, + split=split, + iou_threshold=args.iou_threshold, + max_misses=args.max_misses, + min_tube_length=args.min_tube_length, + min_detected_entries=args.min_detected_entries, + ) + if reason is not None: + dropped.append(DropRecord(sequence_id=seq_dir.name, reason=reason)) + continue + + out_path = args.output_dir / f"{seq_dir.name}.json" + out_path.write_text(json.dumps(record, indent=2)) + written += 1 + by_label[record["label"]] += 1 + + summary = { + "split": split, + "total_sequences": len(seq_dirs), + "tubes_written": written, + "by_label": by_label, + "dropped": [ + {"sequence_id": d.sequence_id, "reason": d.reason} for d in dropped + ], + } + (args.output_dir / "_summary.json").write_text(json.dumps(summary, indent=2)) + + print( + f"[{split}] wrote {written}/{len(seq_dirs)} tubes " + f"(smoke={by_label['smoke']}, fp={by_label['fp']}, " + f"dropped={len(dropped)})" + ) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/evaluate.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/evaluate.py new file mode 100644 index 00000000..2f159b7d --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/evaluate.py @@ -0,0 +1,157 @@ +"""Evaluate a trained tube-multiscale classifier on a split. + +Loads the best checkpoint, runs inference over the dataset, computes +classification metrics + PR/ROC curves, and writes them under +``--output-dir``. +""" + +import argparse +import json +from pathlib import Path + +import lightning as L +import numpy as np +import torch +import yaml +from sklearn.metrics import ( + average_precision_score, + confusion_matrix, + roc_auc_score, +) +from torch.utils.data import DataLoader + +from tube_multiscale_fusion.dataset import TubePatchDataset +from tube_multiscale_fusion.eval_plots import ( + plot_confusion_matrix, + plot_pr_curve, + plot_roc_curve, +) +from tube_multiscale_fusion.lit_module import LitTubeMultiscaleClassifier + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--data-dir", type=Path, required=True) + parser.add_argument("--checkpoint", type=Path, required=True) + parser.add_argument("--output-dir", type=Path, required=True) + parser.add_argument("--params-path", type=Path, required=True) + parser.add_argument("--params-key", required=True) + args = parser.parse_args() + + full_params = yaml.safe_load(args.params_path.read_text()) + cfg = full_params[args.params_key] + args.output_dir.mkdir(parents=True, exist_ok=True) + + L.seed_everything(cfg["seed"], workers=True) + + lit = LitTubeMultiscaleClassifier.load_from_checkpoint( + str(args.checkpoint), pretrained=False + ) + lit.eval() + device = torch.device("cuda" if torch.cuda.is_available() else "cpu") + print(f"Using device: {device}") + lit.to(device) + + ds = TubePatchDataset(args.data_dir, max_frames=cfg["max_frames"]) + loader = DataLoader( + ds, + batch_size=cfg["batch_size"], + shuffle=False, + num_workers=cfg["num_workers"], + ) + + all_probs: list[float] = [] + all_labels: list[float] = [] + all_sequence_ids: list[str] = [] + with torch.no_grad(): + for batch in loader: + patches = batch["patches"].to(device) + mask = batch["mask"].to(device) + logits = lit(patches, mask) + probs = torch.sigmoid(logits).cpu().tolist() + all_probs.extend(probs) + all_labels.extend(batch["label"].tolist()) + all_sequence_ids.extend(batch["sequence_id"]) + + probs = np.asarray(all_probs) + labels = np.asarray(all_labels) + preds = (probs > 0.5).astype(int) + + cm = confusion_matrix(labels, preds, labels=[0, 1]).tolist() + tn, fp, fn, tp = cm[0][0], cm[0][1], cm[1][0], cm[1][1] + accuracy = (tp + tn) / max(tp + tn + fp + fn, 1) + precision = tp / max(tp + fp, 1) + recall = tp / max(tp + fn, 1) + f1 = 2 * precision * recall / max(precision + recall, 1e-8) + pr_auc = float(average_precision_score(labels, probs)) if labels.sum() > 0 else 0.0 + roc_auc = ( + float(roc_auc_score(labels, probs)) if 0 < labels.sum() < len(labels) else 0.0 + ) + + neg_total = tn + fp + pos_total = tp + fn + fp_as_fp = tn / neg_total if neg_total > 0 else 0.0 + fp_as_smoke = fp / neg_total if neg_total > 0 else 0.0 + smoke_as_fp = fn / pos_total if pos_total > 0 else 0.0 + smoke_as_smoke = tp / pos_total if pos_total > 0 else 0.0 + + metrics = { + "accuracy": accuracy, + "precision": precision, + "recall": recall, + "f1": f1, + "pr_auc": pr_auc, + "roc_auc": roc_auc, + "confusion_matrix": {"tn": tn, "fp": fp, "fn": fn, "tp": tp}, + "confusion_matrix_normalized": { + "fp_as_fp": fp_as_fp, + "fp_as_smoke": fp_as_smoke, + "smoke_as_fp": smoke_as_fp, + "smoke_as_smoke": smoke_as_smoke, + }, + "n_samples": int(len(labels)), + "n_positive": int(labels.sum()), + } + (args.output_dir / "metrics.json").write_text(json.dumps(metrics, indent=2)) + + split_name = args.output_dir.parent.name + cm_abs = np.array([[tn, fp], [fn, tp]], dtype=float) + cm_norm = np.array( + [[fp_as_fp, fp_as_smoke], [smoke_as_fp, smoke_as_smoke]], dtype=float + ) + plot_confusion_matrix( + cm_abs, + args.output_dir / "confusion_matrix.png", + title=f"tube-multiscale / {split_name} (counts)", + normalized=False, + ) + plot_confusion_matrix( + cm_norm, + args.output_dir / "confusion_matrix_normalized.png", + title=f"tube-multiscale / {split_name} (row-normalized)", + normalized=True, + ) + + plot_pr_curve(labels, probs, args.output_dir / "pr_curve.png", title="PR") + plot_roc_curve(labels, probs, args.output_dir / "roc_curve.png", title="ROC") + + predictions = [ + { + "sequence_id": seq_id, + "truth": int(truth), + "prob": float(prob), + "predicted": int(pred), + "correct": bool(int(truth) == int(pred)), + } + for seq_id, truth, prob, pred in zip( + all_sequence_ids, labels, probs, preds, strict=True + ) + ] + predictions.sort(key=lambda r: r["prob"], reverse=True) + (args.output_dir / "predictions.json").write_text(json.dumps(predictions, indent=2)) + + print(json.dumps(metrics, indent=2)) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/evaluate_ablation.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/evaluate_ablation.py new file mode 100644 index 00000000..88be5417 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/evaluate_ablation.py @@ -0,0 +1,154 @@ +"""Evaluate the no-temporal-module ablation classifier on a split. + +Same metric/plot outputs as ``scripts/evaluate.py`` so the ablation is +directly comparable to the full model. +""" + +import argparse +import json +from pathlib import Path + +import lightning as L +import numpy as np +import torch +import yaml +from sklearn.metrics import ( + average_precision_score, + confusion_matrix, + roc_auc_score, +) +from torch.utils.data import DataLoader + +from tube_multiscale_fusion.dataset import TubePatchDataset +from tube_multiscale_fusion.eval_plots import ( + plot_confusion_matrix, + plot_pr_curve, + plot_roc_curve, +) +from tube_multiscale_fusion.lit_ablation import LitAblationNoTemporal + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--data-dir", type=Path, required=True) + parser.add_argument("--checkpoint", type=Path, required=True) + parser.add_argument("--output-dir", type=Path, required=True) + parser.add_argument("--params-path", type=Path, required=True) + parser.add_argument("--params-key", required=True) + args = parser.parse_args() + + full_params = yaml.safe_load(args.params_path.read_text()) + cfg = full_params[args.params_key] + args.output_dir.mkdir(parents=True, exist_ok=True) + + L.seed_everything(cfg["seed"], workers=True) + + lit = LitAblationNoTemporal.load_from_checkpoint(str(args.checkpoint)) + lit.eval() + device = torch.device("cuda" if torch.cuda.is_available() else "cpu") + print(f"Using device: {device}") + lit.to(device) + + ds = TubePatchDataset(args.data_dir, max_frames=cfg["max_frames"]) + loader = DataLoader( + ds, batch_size=cfg["batch_size"], shuffle=False, num_workers=cfg["num_workers"] + ) + + all_probs: list[float] = [] + all_labels: list[float] = [] + all_sequence_ids: list[str] = [] + with torch.no_grad(): + for batch in loader: + patches = batch["patches"].to(device) + mask = batch["mask"].to(device) + logits = lit(patches, mask) + all_probs.extend(torch.sigmoid(logits).cpu().tolist()) + all_labels.extend(batch["label"].tolist()) + all_sequence_ids.extend(batch["sequence_id"]) + + probs = np.asarray(all_probs) + labels = np.asarray(all_labels) + preds = (probs > 0.5).astype(int) + + cm = confusion_matrix(labels, preds, labels=[0, 1]).tolist() + tn, fp, fn, tp = cm[0][0], cm[0][1], cm[1][0], cm[1][1] + accuracy = (tp + tn) / max(tp + tn + fp + fn, 1) + precision = tp / max(tp + fp, 1) + recall = tp / max(tp + fn, 1) + f1 = 2 * precision * recall / max(precision + recall, 1e-8) + pr_auc = float(average_precision_score(labels, probs)) if labels.sum() > 0 else 0.0 + roc_auc = ( + float(roc_auc_score(labels, probs)) if 0 < labels.sum() < len(labels) else 0.0 + ) + + neg_total = tn + fp + pos_total = tp + fn + metrics = { + "accuracy": accuracy, + "precision": precision, + "recall": recall, + "f1": f1, + "pr_auc": pr_auc, + "roc_auc": roc_auc, + "confusion_matrix": {"tn": tn, "fp": fp, "fn": fn, "tp": tp}, + "confusion_matrix_normalized": { + "fp_as_fp": tn / neg_total if neg_total > 0 else 0.0, + "fp_as_smoke": fp / neg_total if neg_total > 0 else 0.0, + "smoke_as_fp": fn / pos_total if pos_total > 0 else 0.0, + "smoke_as_smoke": tp / pos_total if pos_total > 0 else 0.0, + }, + "n_samples": int(len(labels)), + "n_positive": int(labels.sum()), + } + (args.output_dir / "metrics.json").write_text(json.dumps(metrics, indent=2)) + + split_name = args.output_dir.parent.name + cm_abs = np.array([[tn, fp], [fn, tp]], dtype=float) + cm_norm = np.array( + [ + [ + metrics["confusion_matrix_normalized"]["fp_as_fp"], + metrics["confusion_matrix_normalized"]["fp_as_smoke"], + ], + [ + metrics["confusion_matrix_normalized"]["smoke_as_fp"], + metrics["confusion_matrix_normalized"]["smoke_as_smoke"], + ], + ], + dtype=float, + ) + plot_confusion_matrix( + cm_abs, + args.output_dir / "confusion_matrix.png", + title=f"ablation-no-temporal / {split_name} (counts)", + normalized=False, + ) + plot_confusion_matrix( + cm_norm, + args.output_dir / "confusion_matrix_normalized.png", + title=f"ablation-no-temporal / {split_name} (row-normalized)", + normalized=True, + ) + plot_pr_curve(labels, probs, args.output_dir / "pr_curve.png", title="PR") + plot_roc_curve(labels, probs, args.output_dir / "roc_curve.png", title="ROC") + + predictions = [ + { + "sequence_id": seq_id, + "truth": int(truth), + "prob": float(prob), + "predicted": int(pred), + "correct": bool(int(truth) == int(pred)), + } + for seq_id, truth, prob, pred in zip( + all_sequence_ids, labels, probs, preds, strict=True + ) + ] + predictions.sort(key=lambda r: r["prob"], reverse=True) + (args.output_dir / "predictions.json").write_text(json.dumps(predictions, indent=2)) + + print(json.dumps(metrics, indent=2)) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/evaluate_ablation_global.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/evaluate_ablation_global.py new file mode 100644 index 00000000..e2794f12 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/evaluate_ablation_global.py @@ -0,0 +1,154 @@ +"""Evaluate a global-branch ablation variant (no_spatial / weighted_mean). + +Same metric/plot outputs as ``scripts/evaluate.py`` for direct comparability. +""" + +import argparse +import json +from pathlib import Path + +import lightning as L +import numpy as np +import torch +import yaml +from sklearn.metrics import ( + average_precision_score, + confusion_matrix, + roc_auc_score, +) +from torch.utils.data import DataLoader + +from tube_multiscale_fusion.dataset import TubePatchDataset +from tube_multiscale_fusion.eval_plots import ( + plot_confusion_matrix, + plot_pr_curve, + plot_roc_curve, +) +from tube_multiscale_fusion.lit_ablation import LitAblationGlobal + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--data-dir", type=Path, required=True) + parser.add_argument("--checkpoint", type=Path, required=True) + parser.add_argument("--output-dir", type=Path, required=True) + parser.add_argument("--params-path", type=Path, required=True) + parser.add_argument("--params-key", required=True) + args = parser.parse_args() + + full_params = yaml.safe_load(args.params_path.read_text()) + cfg = full_params[args.params_key] + args.output_dir.mkdir(parents=True, exist_ok=True) + variant = cfg["ablation_variant"] + + L.seed_everything(cfg["seed"], workers=True) + + lit = LitAblationGlobal.load_from_checkpoint(str(args.checkpoint), pretrained=False) + lit.eval() + device = torch.device("cuda" if torch.cuda.is_available() else "cpu") + print(f"Using device: {device}") + lit.to(device) + + ds = TubePatchDataset(args.data_dir, max_frames=cfg["max_frames"]) + loader = DataLoader( + ds, batch_size=cfg["batch_size"], shuffle=False, num_workers=cfg["num_workers"] + ) + + all_probs: list[float] = [] + all_labels: list[float] = [] + all_sequence_ids: list[str] = [] + with torch.no_grad(): + for batch in loader: + patches = batch["patches"].to(device) + mask = batch["mask"].to(device) + logits = lit(patches, mask) + all_probs.extend(torch.sigmoid(logits).cpu().tolist()) + all_labels.extend(batch["label"].tolist()) + all_sequence_ids.extend(batch["sequence_id"]) + + probs = np.asarray(all_probs) + labels = np.asarray(all_labels) + preds = (probs > 0.5).astype(int) + + cm = confusion_matrix(labels, preds, labels=[0, 1]).tolist() + tn, fp, fn, tp = cm[0][0], cm[0][1], cm[1][0], cm[1][1] + accuracy = (tp + tn) / max(tp + tn + fp + fn, 1) + precision = tp / max(tp + fp, 1) + recall = tp / max(tp + fn, 1) + f1 = 2 * precision * recall / max(precision + recall, 1e-8) + pr_auc = float(average_precision_score(labels, probs)) if labels.sum() > 0 else 0.0 + roc_auc = ( + float(roc_auc_score(labels, probs)) if 0 < labels.sum() < len(labels) else 0.0 + ) + + neg_total = tn + fp + pos_total = tp + fn + metrics = { + "accuracy": accuracy, + "precision": precision, + "recall": recall, + "f1": f1, + "pr_auc": pr_auc, + "roc_auc": roc_auc, + "confusion_matrix": {"tn": tn, "fp": fp, "fn": fn, "tp": tp}, + "confusion_matrix_normalized": { + "fp_as_fp": tn / neg_total if neg_total > 0 else 0.0, + "fp_as_smoke": fp / neg_total if neg_total > 0 else 0.0, + "smoke_as_fp": fn / pos_total if pos_total > 0 else 0.0, + "smoke_as_smoke": tp / pos_total if pos_total > 0 else 0.0, + }, + "n_samples": int(len(labels)), + "n_positive": int(labels.sum()), + } + (args.output_dir / "metrics.json").write_text(json.dumps(metrics, indent=2)) + + split_name = args.output_dir.parent.name + cm_abs = np.array([[tn, fp], [fn, tp]], dtype=float) + cm_norm = np.array( + [ + [ + metrics["confusion_matrix_normalized"]["fp_as_fp"], + metrics["confusion_matrix_normalized"]["fp_as_smoke"], + ], + [ + metrics["confusion_matrix_normalized"]["smoke_as_fp"], + metrics["confusion_matrix_normalized"]["smoke_as_smoke"], + ], + ], + dtype=float, + ) + plot_confusion_matrix( + cm_abs, + args.output_dir / "confusion_matrix.png", + title=f"ablation-{variant} / {split_name} (counts)", + normalized=False, + ) + plot_confusion_matrix( + cm_norm, + args.output_dir / "confusion_matrix_normalized.png", + title=f"ablation-{variant} / {split_name} (row-normalized)", + normalized=True, + ) + plot_pr_curve(labels, probs, args.output_dir / "pr_curve.png", title="PR") + plot_roc_curve(labels, probs, args.output_dir / "roc_curve.png", title="ROC") + + predictions = [ + { + "sequence_id": seq_id, + "truth": int(truth), + "prob": float(prob), + "predicted": int(pred), + "correct": bool(int(truth) == int(pred)), + } + for seq_id, truth, prob, pred in zip( + all_sequence_ids, labels, probs, preds, strict=True + ) + ] + predictions.sort(key=lambda r: r["prob"], reverse=True) + (args.output_dir / "predictions.json").write_text(json.dumps(predictions, indent=2)) + + print(json.dumps(metrics, indent=2)) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/package_model.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/package_model.py new file mode 100644 index 00000000..f61e4695 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/package_model.py @@ -0,0 +1,181 @@ +"""Package a trained tube-multiscale-fusion checkpoint into a deployable .zip. + +Builds a leaderboard-comparable model archive (mirroring the sibling +``bbox-tube-temporal`` experiment): bundles the YOLO companion detector +weights, the Lightning checkpoint, and the inference config needed by +``TubeMultiscaleFusionModel`` to run the full raw-frames -> decision pipeline. + +The decision threshold is calibrated on the val patches to hit +``package.target_recall`` before being pinned into the archive config. + +Example: + uv run python scripts/package_model.py \\ + --checkpoint data/06_models/dinov2_multiscale/best_checkpoint.pt \\ + --params-path params.yaml \\ + --params-key train_dinov2_multiscale \\ + --yolo-weights-path data/01_raw/models/best.pt \\ + --val-patches-dir data/05_model_input/val \\ + --output data/07_model_output/dinov2_multiscale/model_package.zip +""" + +import argparse +from pathlib import Path + +import numpy as np +import torch +import yaml +from torch.utils.data import DataLoader + +from tube_multiscale_fusion.dataset import IMAGENET_MEAN, IMAGENET_STD, TubePatchDataset +from tube_multiscale_fusion.package import _load_classifier, build_model_package + + +def _calibrate_threshold( + probs: np.ndarray, labels: np.ndarray, *, target_recall: float +) -> float: + """Smallest prob threshold whose recall on positives >= ``target_recall``. + + Same rule as ``bbox_tube_temporal``'s packager (that helper lives in the + experiment, not the shared lib, so it's inlined here). + """ + if not 0.0 < target_recall <= 1.0: + raise ValueError(f"target_recall must be in (0, 1], got {target_recall!r}") + pos_probs = np.sort(probs[labels == 1]) + if pos_probs.size == 0: + raise ValueError("no positives in labels; cannot calibrate recall") + n_drop = int(np.floor(pos_probs.size * (1.0 - target_recall))) + return float(pos_probs[n_drop]) + + +def _collect_val_probabilities( + classifier: torch.nn.Module, + val_patches_dir: Path, + *, + max_frames: int, + batch_size: int, + num_workers: int, + device: torch.device, +) -> tuple[np.ndarray, np.ndarray]: + """Run the classifier over val patches; return ``(probs, labels)`` arrays.""" + ds = TubePatchDataset(val_patches_dir, max_frames=max_frames) + loader = DataLoader( + ds, batch_size=batch_size, shuffle=False, num_workers=num_workers + ) + probs: list[float] = [] + labels: list[float] = [] + with torch.no_grad(): + for batch in loader: + logits = classifier(batch["patches"].to(device), batch["mask"].to(device)) + probs.extend(torch.sigmoid(logits).cpu().tolist()) + labels.extend(batch["label"].tolist()) + return np.asarray(probs), np.asarray(labels) + + +def _build_config( + all_params: dict, + package_params: dict, + *, + max_frames: int, + threshold: float, +) -> dict: + """Assemble the inference config embedded in the archive.""" + return { + "infer": package_params["infer"], + "tubes": { + "iou_threshold": all_params["tubes"]["iou_threshold"], + "max_misses": all_params["tubes"]["max_misses"], + "min_tube_length": all_params["build_tubes"]["min_tube_length"], + "infer_min_tube_length": package_params["infer_min_tube_length"], + "min_detected_entries": all_params["build_tubes"]["min_detected_entries"], + "interpolate_gaps": True, + }, + "model_input": { + "context_factor": all_params["model_input"]["context_factor"], + "patch_size": all_params["model_input"]["patch_size"], + "normalization": { + "mean": IMAGENET_MEAN.flatten().tolist(), + "std": IMAGENET_STD.flatten().tolist(), + }, + }, + "classifier": {"max_frames": max_frames}, + "decision": { + "aggregation": "max_logit", + "threshold": float(threshold), + "target_recall": package_params["target_recall"], + }, + } + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--checkpoint", type=Path, required=True) + parser.add_argument("--params-path", type=Path, required=True) + parser.add_argument("--params-key", required=True) + parser.add_argument("--output", type=Path, required=True) + parser.add_argument( + "--yolo-weights-path", + type=Path, + default=Path("data/01_raw/models/best.pt"), + ) + parser.add_argument( + "--val-patches-dir", + type=Path, + default=Path("data/05_model_input/val"), + ) + args = parser.parse_args() + + if not args.checkpoint.is_file(): + raise FileNotFoundError(f"checkpoint not found: {args.checkpoint}") + + all_params = yaml.safe_load(args.params_path.read_text()) + if args.params_key not in all_params: + raise KeyError(f"params key not found in {args.params_path}: {args.params_key}") + if "package" not in all_params: + raise KeyError(f"'package' section missing from {args.params_path}") + train_cfg = all_params[args.params_key] + package_params = all_params["package"] + + device = torch.device("cuda" if torch.cuda.is_available() else "cpu") + classifier = _load_classifier(args.checkpoint).to(device) + max_frames = int(classifier.hparams["max_frames"]) + + probs, labels = _collect_val_probabilities( + classifier, + args.val_patches_dir, + max_frames=max_frames, + batch_size=train_cfg.get("batch_size", 32), + num_workers=train_cfg.get("num_workers", 4), + device=device, + ) + threshold_prob = _calibrate_threshold( + probs, labels, target_recall=package_params["target_recall"] + ) + # calibrate_threshold returns a probability; the max_logit rule compares raw + # logits, so convert via the inverse sigmoid (logit) once here. Clamp away + # from 0/1 so a saturated sigmoid doesn't produce a +/-inf threshold. + p = float(np.clip(threshold_prob, 1e-6, 1.0 - 1e-6)) + threshold_logit = float(np.log(p / (1.0 - p))) + + config = _build_config( + all_params, + package_params, + max_frames=max_frames, + threshold=threshold_logit, + ) + build_model_package( + yolo_weights_path=args.yolo_weights_path, + classifier_ckpt_path=args.checkpoint, + config=config, + variant=args.params_key.removeprefix("train_"), + output_path=args.output, + ) + print( + f"[package] wrote {args.output} " + f"({args.output.stat().st_size / 1e6:.1f} MB) | " + f"variant={args.params_key} target_recall={package_params['target_recall']} " + f"prob_threshold={threshold_prob:.4f} logit_threshold={threshold_logit:.4f}" + ) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/prepare.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/prepare.py new file mode 100644 index 00000000..8fc76433 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/prepare.py @@ -0,0 +1,66 @@ +"""Download YOLO model weights from HuggingFace Hub. + +Fetches a single model file from a HuggingFace repository and saves it +to the local data directory. Skips the download if the file already exists. + +These weights are the serving-time detector companion: the training / +data-prep pipeline reads ground-truth label files (no inference), but the +``TemporalModel`` serving path (``tube_multiscale_fusion.model``) runs this +YOLO over raw frames before building tubes. The packager bundles the same +weights into the deployable model archive. + +Usage: + uv run python scripts/prepare.py \ + --model-repo pyronear/yolo11s_nimble-narwhal_v6.0.0 \ + --model-filename best.pt \ + --output-model-dir data/01_raw/models +""" + +import argparse +import logging +from pathlib import Path + +from huggingface_hub import hf_hub_download + +logging.basicConfig(level=logging.INFO, format="%(levelname)s: %(message)s") +logger = logging.getLogger(__name__) + + +def main() -> None: + parser = argparse.ArgumentParser(description="Download YOLO model.") + parser.add_argument( + "--model-repo", + type=str, + required=True, + help="HuggingFace model repo ID.", + ) + parser.add_argument( + "--model-filename", + type=str, + required=True, + help="Model filename in the HuggingFace repo.", + ) + parser.add_argument( + "--output-model-dir", + type=Path, + required=True, + help="Output directory for model weights (data/01_raw/models).", + ) + args = parser.parse_args() + + args.output_model_dir.mkdir(parents=True, exist_ok=True) + dst_model = args.output_model_dir / args.model_filename + if dst_model.exists(): + logger.info("Model already exists at %s, skipping.", dst_model) + else: + logger.info("Downloading %s from %s...", args.model_filename, args.model_repo) + hf_hub_download( + repo_id=args.model_repo, + filename=args.model_filename, + local_dir=args.output_model_dir, + ) + logger.info("Model saved to %s", dst_model) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/train.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/train.py new file mode 100644 index 00000000..4027a3b5 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/train.py @@ -0,0 +1,157 @@ +"""Train the tube multiscale fusion classifier. + +Reads a single named section from ``params.yaml`` (e.g. ``train_dinov2_multiscale``) +so each DVC stage owns its own params. +""" + +import argparse +import sys +from pathlib import Path + +import lightning as L +import torch +import yaml +from lightning.pytorch.callbacks import EarlyStopping, ModelCheckpoint +from lightning.pytorch.loggers import CSVLogger, TensorBoardLogger +from torch.utils.data import DataLoader + +from tube_multiscale_fusion.augment import build_tube_augment +from tube_multiscale_fusion.dataset import TubePatchDataset +from tube_multiscale_fusion.lit_module import LitTubeMultiscaleClassifier + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--train-dir", type=Path, required=True) + parser.add_argument("--val-dir", type=Path, required=True) + parser.add_argument("--output-dir", type=Path, required=True) + parser.add_argument("--params-path", type=Path, required=True) + parser.add_argument("--params-key", required=True, help="Key in params.yaml") + args = parser.parse_args() + + full_params = yaml.safe_load(args.params_path.read_text()) + cfg = full_params[args.params_key] + augment_cfg = full_params.get("augment", {"enabled": False}) + g_cfg = full_params[cfg.get("global_branch_section", "global_branch")] + l_cfg = full_params[cfg.get("local_branch_section", "local_branch")] + f_cfg = full_params[cfg.get("fusion_section", "fusion")] + + device_name = torch.cuda.get_device_name(0) if torch.cuda.is_available() else "cpu" + print( + f"CUDA available: {torch.cuda.is_available()} | " + f"device count: {torch.cuda.device_count()} | " + f"device: {device_name}", + file=sys.stderr, + flush=True, + ) + + L.seed_everything(cfg["seed"], workers=True) + args.output_dir.mkdir(parents=True, exist_ok=True) + + train_transform = build_tube_augment(augment_cfg, train=True) + val_transform = build_tube_augment(augment_cfg, train=False) + + train_ds = TubePatchDataset( + args.train_dir, + max_frames=cfg["max_frames"], + transform=train_transform, + ) + val_ds = TubePatchDataset( + args.val_dir, + max_frames=cfg["max_frames"], + transform=val_transform, + ) + + train_loader = DataLoader( + train_ds, + batch_size=cfg["batch_size"], + shuffle=True, + num_workers=cfg["num_workers"], + persistent_workers=cfg["num_workers"] > 0, + ) + val_loader = DataLoader( + val_ds, + batch_size=cfg["batch_size"], + shuffle=False, + num_workers=cfg["num_workers"], + persistent_workers=cfg["num_workers"] > 0, + ) + + lit = LitTubeMultiscaleClassifier( + backbone=g_cfg["backbone"], + max_frames=cfg["max_frames"], + global_aggregator_num_layers=g_cfg["aggregator"]["num_layers"], + global_aggregator_num_heads=g_cfg["aggregator"]["num_heads"], + global_aggregator_ffn_dim=g_cfg["aggregator"]["ffn_dim"], + global_aggregator_dropout=g_cfg["aggregator"]["dropout"], + grid_size=l_cfg["grid_size"], + cell_size=l_cfg["cell_size"], + tube_length=l_cfg["tube_length"], + temporal_stride=l_cfg["temporal_stride"], + local_t_kernel=l_cfg["encoder"]["t_kernel"], + local_h_patch=l_cfg["encoder"]["h_patch"], + local_w_patch=l_cfg["encoder"]["w_patch"], + local_embed_dim=l_cfg["encoder"]["embed_dim"], + local_num_layers=l_cfg["encoder"]["num_layers"], + local_num_heads=l_cfg["encoder"]["num_heads"], + local_ffn_dim=l_cfg["encoder"]["ffn_dim"], + local_dropout=l_cfg["encoder"]["dropout"], + d_fusion=f_cfg["d_fusion"], + fusion_num_layers=f_cfg["num_layers"], + fusion_num_heads=f_cfg["num_heads"], + fusion_ffn_dim=f_cfg["ffn_dim"], + fusion_dropout=f_cfg["dropout"], + head_hidden_dim=cfg["head_hidden_dim"], + head_dropout=cfg.get("head_dropout", 0.0), + learning_rate=cfg["learning_rate"], + weight_decay=cfg["weight_decay"], + finetune=cfg.get("finetune", False), + finetune_last_n_blocks=cfg.get("finetune_last_n_blocks", 0), + backbone_lr=cfg.get("backbone_lr"), + aggregator_kind=cfg.get("aggregator_kind", "transformer"), + encoder_kind=cfg.get("encoder_kind", "tubelet_transformer"), + img_size=cfg.get("img_size", 224), + pretrained=True, + use_cosine_warmup=cfg.get("use_cosine_warmup", False), + warmup_frac=cfg.get("warmup_frac", 0.05), + ) + + callbacks = [ + ModelCheckpoint( + dirpath=args.output_dir, + filename="best", + monitor="val/f1", + mode="max", + save_top_k=1, + save_weights_only=False, + ), + EarlyStopping( + monitor="val/loss", mode="min", patience=cfg["early_stop_patience"] + ), + ] + loggers = [ + CSVLogger(save_dir=args.output_dir, name="csv_logs"), + TensorBoardLogger(save_dir=args.output_dir, name="tb_logs"), + ] + + trainer = L.Trainer( + max_epochs=cfg["max_epochs"], + callbacks=callbacks, + logger=loggers, + log_every_n_steps=10, + deterministic=True, + accelerator="auto", + devices=1, + ) + trainer.fit(lit, train_loader, val_loader) + + best = args.output_dir / "best.ckpt" + target = args.output_dir / "best_checkpoint.pt" + if best.exists(): + if target.exists(): + target.unlink() + best.rename(target) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/train_ablation.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/train_ablation.py new file mode 100644 index 00000000..d5b3c081 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/train_ablation.py @@ -0,0 +1,139 @@ +"""Train the no-temporal-module ablation (full model minus the global branch). + +Reuses the same ``global_branch`` (ignored), ``local_branch``, and ``fusion`` +sections as the full model so the kept components are byte-for-byte identical. +""" + +import argparse +import sys +from pathlib import Path + +import lightning as L +import torch +import yaml +from lightning.pytorch.callbacks import EarlyStopping, ModelCheckpoint +from lightning.pytorch.loggers import CSVLogger, TensorBoardLogger +from torch.utils.data import DataLoader + +from tube_multiscale_fusion.augment import build_tube_augment +from tube_multiscale_fusion.dataset import TubePatchDataset +from tube_multiscale_fusion.lit_ablation import LitAblationNoTemporal + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--train-dir", type=Path, required=True) + parser.add_argument("--val-dir", type=Path, required=True) + parser.add_argument("--output-dir", type=Path, required=True) + parser.add_argument("--params-path", type=Path, required=True) + parser.add_argument("--params-key", required=True, help="Key in params.yaml") + args = parser.parse_args() + + full_params = yaml.safe_load(args.params_path.read_text()) + cfg = full_params[args.params_key] + augment_cfg = full_params.get("augment", {"enabled": False}) + l_cfg = full_params[cfg.get("local_branch_section", "local_branch")] + f_cfg = full_params[cfg.get("fusion_section", "fusion")] + + device_name = torch.cuda.get_device_name(0) if torch.cuda.is_available() else "cpu" + print( + f"CUDA available: {torch.cuda.is_available()} | device: {device_name}", + file=sys.stderr, + flush=True, + ) + + L.seed_everything(cfg["seed"], workers=True) + args.output_dir.mkdir(parents=True, exist_ok=True) + + train_transform = build_tube_augment(augment_cfg, train=True) + val_transform = build_tube_augment(augment_cfg, train=False) + + train_ds = TubePatchDataset( + args.train_dir, max_frames=cfg["max_frames"], transform=train_transform + ) + val_ds = TubePatchDataset( + args.val_dir, max_frames=cfg["max_frames"], transform=val_transform + ) + + train_loader = DataLoader( + train_ds, + batch_size=cfg["batch_size"], + shuffle=True, + num_workers=cfg["num_workers"], + persistent_workers=cfg["num_workers"] > 0, + ) + val_loader = DataLoader( + val_ds, + batch_size=cfg["batch_size"], + shuffle=False, + num_workers=cfg["num_workers"], + persistent_workers=cfg["num_workers"] > 0, + ) + + lit = LitAblationNoTemporal( + grid_size=l_cfg["grid_size"], + cell_size=l_cfg["cell_size"], + tube_length=l_cfg["tube_length"], + temporal_stride=l_cfg["temporal_stride"], + local_t_kernel=l_cfg["encoder"]["t_kernel"], + local_h_patch=l_cfg["encoder"]["h_patch"], + local_w_patch=l_cfg["encoder"]["w_patch"], + local_embed_dim=l_cfg["encoder"]["embed_dim"], + local_num_layers=l_cfg["encoder"]["num_layers"], + local_num_heads=l_cfg["encoder"]["num_heads"], + local_ffn_dim=l_cfg["encoder"]["ffn_dim"], + local_dropout=l_cfg["encoder"]["dropout"], + d_fusion=f_cfg["d_fusion"], + fusion_num_layers=f_cfg["num_layers"], + fusion_num_heads=f_cfg["num_heads"], + fusion_ffn_dim=f_cfg["ffn_dim"], + fusion_dropout=f_cfg["dropout"], + head_hidden_dim=cfg["head_hidden_dim"], + head_dropout=cfg.get("head_dropout", 0.0), + query_dim=cfg.get("query_dim", 384), + encoder_kind=cfg.get("encoder_kind", "tubelet_transformer"), + learning_rate=cfg["learning_rate"], + weight_decay=cfg["weight_decay"], + use_cosine_warmup=cfg.get("use_cosine_warmup", False), + warmup_frac=cfg.get("warmup_frac", 0.05), + ) + + callbacks = [ + ModelCheckpoint( + dirpath=args.output_dir, + filename="best", + monitor="val/f1", + mode="max", + save_top_k=1, + save_weights_only=False, + ), + EarlyStopping( + monitor="val/f1", mode="max", patience=cfg["early_stop_patience"] + ), + ] + loggers = [ + CSVLogger(save_dir=args.output_dir, name="csv_logs"), + TensorBoardLogger(save_dir=args.output_dir, name="tb_logs"), + ] + + trainer = L.Trainer( + max_epochs=cfg["max_epochs"], + callbacks=callbacks, + logger=loggers, + log_every_n_steps=10, + deterministic=True, + accelerator="auto", + devices=1, + ) + trainer.fit(lit, train_loader, val_loader) + + best = args.output_dir / "best.ckpt" + target = args.output_dir / "best_checkpoint.pt" + if best.exists(): + if target.exists(): + target.unlink() + best.rename(target) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/train_ablation_global.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/train_ablation_global.py new file mode 100644 index 00000000..d1db080e --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/train_ablation_global.py @@ -0,0 +1,147 @@ +"""Train a global-branch ablation variant (no_spatial or weighted_mean). + +Reads the variant's training block plus the shared ``global_branch`` / +``local_branch`` / ``fusion`` sections so the retained components match the +full model byte-for-byte. +""" + +import argparse +import sys +from pathlib import Path + +import lightning as L +import torch +import yaml +from lightning.pytorch.callbacks import EarlyStopping, ModelCheckpoint +from lightning.pytorch.loggers import CSVLogger, TensorBoardLogger +from torch.utils.data import DataLoader + +from tube_multiscale_fusion.augment import build_tube_augment +from tube_multiscale_fusion.dataset import TubePatchDataset +from tube_multiscale_fusion.lit_ablation import LitAblationGlobal + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument("--train-dir", type=Path, required=True) + parser.add_argument("--val-dir", type=Path, required=True) + parser.add_argument("--output-dir", type=Path, required=True) + parser.add_argument("--params-path", type=Path, required=True) + parser.add_argument("--params-key", required=True) + args = parser.parse_args() + + full_params = yaml.safe_load(args.params_path.read_text()) + cfg = full_params[args.params_key] + augment_cfg = full_params.get("augment", {"enabled": False}) + g_cfg = full_params[cfg.get("global_branch_section", "global_branch")] + l_cfg = full_params[cfg.get("local_branch_section", "local_branch")] + f_cfg = full_params[cfg.get("fusion_section", "fusion")] + + device_name = torch.cuda.get_device_name(0) if torch.cuda.is_available() else "cpu" + print( + f"CUDA available: {torch.cuda.is_available()} | device: {device_name}", + file=sys.stderr, + flush=True, + ) + + L.seed_everything(cfg["seed"], workers=True) + args.output_dir.mkdir(parents=True, exist_ok=True) + + train_transform = build_tube_augment(augment_cfg, train=True) + val_transform = build_tube_augment(augment_cfg, train=False) + + train_ds = TubePatchDataset( + args.train_dir, max_frames=cfg["max_frames"], transform=train_transform + ) + val_ds = TubePatchDataset( + args.val_dir, max_frames=cfg["max_frames"], transform=val_transform + ) + train_loader = DataLoader( + train_ds, + batch_size=cfg["batch_size"], + shuffle=True, + num_workers=cfg["num_workers"], + persistent_workers=cfg["num_workers"] > 0, + ) + val_loader = DataLoader( + val_ds, + batch_size=cfg["batch_size"], + shuffle=False, + num_workers=cfg["num_workers"], + persistent_workers=cfg["num_workers"] > 0, + ) + + lit = LitAblationGlobal( + variant=cfg["ablation_variant"], + backbone=g_cfg["backbone"], + max_frames=cfg["max_frames"], + global_aggregator_num_layers=g_cfg["aggregator"]["num_layers"], + global_aggregator_num_heads=g_cfg["aggregator"]["num_heads"], + global_aggregator_ffn_dim=g_cfg["aggregator"]["ffn_dim"], + global_aggregator_dropout=g_cfg["aggregator"]["dropout"], + grid_size=l_cfg["grid_size"], + cell_size=l_cfg["cell_size"], + tube_length=l_cfg["tube_length"], + temporal_stride=l_cfg["temporal_stride"], + local_t_kernel=l_cfg["encoder"]["t_kernel"], + local_h_patch=l_cfg["encoder"]["h_patch"], + local_w_patch=l_cfg["encoder"]["w_patch"], + local_embed_dim=l_cfg["encoder"]["embed_dim"], + local_num_layers=l_cfg["encoder"]["num_layers"], + local_num_heads=l_cfg["encoder"]["num_heads"], + local_ffn_dim=l_cfg["encoder"]["ffn_dim"], + local_dropout=l_cfg["encoder"]["dropout"], + d_fusion=f_cfg["d_fusion"], + head_hidden_dim=cfg["head_hidden_dim"], + head_dropout=cfg.get("head_dropout", 0.0), + learning_rate=cfg["learning_rate"], + weight_decay=cfg["weight_decay"], + finetune=cfg.get("finetune", False), + finetune_last_n_blocks=cfg.get("finetune_last_n_blocks", 0), + backbone_lr=cfg.get("backbone_lr"), + aggregator_kind=cfg.get("aggregator_kind", "transformer"), + img_size=cfg.get("img_size", 224), + pretrained=True, + use_cosine_warmup=cfg.get("use_cosine_warmup", False), + warmup_frac=cfg.get("warmup_frac", 0.05), + ) + + callbacks = [ + ModelCheckpoint( + dirpath=args.output_dir, + filename="best", + monitor="val/f1", + mode="max", + save_top_k=1, + save_weights_only=False, + ), + EarlyStopping( + monitor="val/f1", mode="max", patience=cfg["early_stop_patience"] + ), + ] + loggers = [ + CSVLogger(save_dir=args.output_dir, name="csv_logs"), + TensorBoardLogger(save_dir=args.output_dir, name="tb_logs"), + ] + + trainer = L.Trainer( + max_epochs=cfg["max_epochs"], + callbacks=callbacks, + logger=loggers, + log_every_n_steps=10, + deterministic=True, + accelerator="auto", + devices=1, + ) + trainer.fit(lit, train_loader, val_loader) + + best = args.output_dir / "best.ckpt" + target = args.output_dir / "best_checkpoint.pt" + if best.exists(): + if target.exists(): + target.unlink() + best.rename(target) + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/scripts/truncate_sequences.py b/experiments/temporal-models/tube-multiscale-fusion/scripts/truncate_sequences.py new file mode 100644 index 00000000..c083d34b --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/scripts/truncate_sequences.py @@ -0,0 +1,82 @@ +"""Truncate sequences to a maximum number of frames. + +Copies sequences from an input directory to an output directory, +keeping only the first N frames (sorted by filename/timestamp). +Preserves the {wildfire,fp}//{images,labels}/ structure. +""" + +import argparse +import shutil +from pathlib import Path + + +def parse_args() -> argparse.Namespace: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument( + "--input-dir", + type=Path, + required=True, + help="Input split directory (e.g. data/01_raw/datasets_full/train)", + ) + parser.add_argument( + "--output-dir", + type=Path, + required=True, + help="Output split directory (e.g. data/01_raw/datasets/train)", + ) + parser.add_argument( + "--max-frames", + type=int, + default=20, + help="Maximum number of frames per sequence (default: 20)", + ) + return parser.parse_args() + + +def truncate_sequence(src_seq: Path, dst_seq: Path, max_frames: int) -> None: + """Copy a sequence directory, truncating to max_frames.""" + src_images = sorted((src_seq / "images").glob("*.jpg")) + src_labels = src_seq / "labels" + + # Keep first max_frames (earliest by filename/timestamp) + kept_images = src_images[:max_frames] + kept_stems = {p.stem for p in kept_images} + + # Copy images + dst_images = dst_seq / "images" + dst_images.mkdir(parents=True, exist_ok=True) + for img in kept_images: + shutil.copy2(img, dst_images / img.name) + + # Copy matching labels + dst_labels = dst_seq / "labels" + dst_labels.mkdir(parents=True, exist_ok=True) + if src_labels.is_dir(): + for label_file in sorted(src_labels.glob("*.txt")): + if label_file.stem in kept_stems: + shutil.copy2(label_file, dst_labels / label_file.name) + + +def main() -> None: + args = parse_args() + + for category in ("wildfire", "fp"): + src_cat = args.input_dir / category + if not src_cat.is_dir(): + print(f"Skipping {category}: {src_cat} not found") + continue + + sequences = sorted(d for d in src_cat.iterdir() if d.is_dir()) + print(f"{category}: {len(sequences)} sequences") + + for seq_dir in sequences: + dst_seq = args.output_dir / category / seq_dir.name + if dst_seq.exists(): + continue + truncate_sequence(seq_dir, dst_seq, args.max_frames) + + print("Done.") + + +if __name__ == "__main__": + main() diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/__init__.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/__init__.py new file mode 100644 index 00000000..f1d41c51 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/__init__.py @@ -0,0 +1,20 @@ +"""Tube multiscale fusion: global DINOv2 context + local tube transformer.""" + +from .classifier import TubeMultiscaleClassifier +from .fusion import FusionModule +from .global_branch import GlobalBranch, TimmBackbone +from .lit_module import LitTubeMultiscaleClassifier +from .local_branch import LocalBranch, LocalTubeEncoder, extract_tubes +from .model import TubeMultiscaleFusionModel + +__all__ = [ + "FusionModule", + "GlobalBranch", + "LitTubeMultiscaleClassifier", + "LocalBranch", + "LocalTubeEncoder", + "TimmBackbone", + "TubeMultiscaleClassifier", + "TubeMultiscaleFusionModel", + "extract_tubes", +] diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/ablation_classifier.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/ablation_classifier.py new file mode 100644 index 00000000..07e4d4ab --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/ablation_classifier.py @@ -0,0 +1,238 @@ +"""Ablation: the full model with the temporal (global) module removed. + +This is a *faithful* ablation of :class:`TubeMultiscaleClassifier`: the local +branch and the fusion module are the **exact same modules** with the **same +hyperparameters**; the only thing removed is the global DINOv2 sequence branch +(the "temporal module" that embeds all 16 frames and aggregates them into a +context vector). + +Because the fusion module expects a query vector (in the full model: the global +context vector), we replace that single input with a **learnable query token** +— a constant, data-independent parameter. Everything downstream (self-attention +over local tubes, cross-attention query→locals, FFN, MLP head) is identical. + +Removing the global branch removes the 16 per-frame DINOv2 forward passes, which +dominate the full model's compute — so this ablation has strictly *fewer* +parameters and FLOPs than the full model, isolating the contribution of the +global temporal context. +""" + +from __future__ import annotations + +import torch +from torch import Tensor, nn + +from .fusion import FusionModule, WeightedMeanFusion +from .global_branch import GlobalBranch +from .local_branch import LocalBranch + + +class AblationNoTemporalClassifier(nn.Module): + """Full model minus the global/temporal branch (learnable query in its place).""" + + def __init__( + self, + # Local branch — identical to the full model + grid_size: int, + cell_size: int, + tube_length: int, + temporal_stride: int, + local_t_kernel: int, + local_h_patch: int, + local_w_patch: int, + local_embed_dim: int, + local_num_layers: int, + local_num_heads: int, + local_ffn_dim: int, + local_dropout: float, + # Fusion — identical to the full model + d_fusion: int, + fusion_num_layers: int, + fusion_num_heads: int, + fusion_ffn_dim: int, + fusion_dropout: float, + # Head — identical to the full model + head_hidden_dim: int, + head_dropout: float = 0.0, + # Dim of the learnable query that stands in for the global vector. + query_dim: int = 384, + # Per-tube spatial encoder (the module under test in the spatial study). + encoder_kind: str = "tubelet_transformer", + ) -> None: + super().__init__() + self.local_branch = LocalBranch( + grid_size=grid_size, + cell_size=cell_size, + tube_length=tube_length, + temporal_stride=temporal_stride, + t_kernel=local_t_kernel, + h_patch=local_h_patch, + w_patch=local_w_patch, + embed_dim=local_embed_dim, + num_layers=local_num_layers, + num_heads=local_num_heads, + ffn_dim=local_ffn_dim, + dropout=local_dropout, + encoder_kind=encoder_kind, + ) + # Learnable stand-in for the (removed) global context vector. + self.query_token = nn.Parameter(torch.zeros(1, query_dim)) + nn.init.trunc_normal_(self.query_token, std=0.02) + self.fusion = FusionModule( + global_dim=query_dim, + local_dim=local_embed_dim, + d_fusion=d_fusion, + num_layers=fusion_num_layers, + num_heads=fusion_num_heads, + ffn_dim=fusion_ffn_dim, + dropout=fusion_dropout, + ) + self.head = nn.Sequential( + nn.Linear(d_fusion, head_hidden_dim), + nn.GELU(), + nn.Dropout(head_dropout), + nn.Linear(head_hidden_dim, 1), + ) + + def forward(self, patches: Tensor, mask: Tensor) -> Tensor: + local_tokens, local_mask = self.local_branch(patches, mask) + query = self.query_token.expand(patches.shape[0], -1) + fused = self.fusion(query, local_tokens, local_mask) + return self.head(fused).squeeze(-1) + + +class AblationNoSpatialClassifier(nn.Module): + """Full model minus the spatial (local tube) branch — global branch only. + + Keeps the global DINOv2 sequence branch exactly as in the full model and + classifies its context vector directly with the same MLP head. No local + branch, no fusion. Isolates the standalone power of the global branch. + """ + + def __init__( + self, + backbone: str, + finetune: bool, + finetune_last_n_blocks: int, + max_frames: int, + global_aggregator_num_layers: int, + global_aggregator_num_heads: int, + global_aggregator_ffn_dim: int, + global_aggregator_dropout: float, + head_hidden_dim: int, + head_dropout: float = 0.0, + aggregator_kind: str = "transformer", + img_size: int = 224, + pretrained: bool = True, + ) -> None: + super().__init__() + self.global_branch = GlobalBranch( + backbone=backbone, + finetune=finetune, + finetune_last_n_blocks=finetune_last_n_blocks, + max_frames=max_frames, + aggregator_num_layers=global_aggregator_num_layers, + aggregator_num_heads=global_aggregator_num_heads, + aggregator_ffn_dim=global_aggregator_ffn_dim, + aggregator_dropout=global_aggregator_dropout, + aggregator_kind=aggregator_kind, + img_size=img_size, + pretrained=pretrained, + ) + self.head = nn.Sequential( + nn.Linear(self.global_branch.feat_dim, head_hidden_dim), + nn.GELU(), + nn.Dropout(head_dropout), + nn.Linear(head_hidden_dim, 1), + ) + + def forward(self, patches: Tensor, mask: Tensor) -> Tensor: + global_vec = self.global_branch(patches, mask) + return self.head(global_vec).squeeze(-1) + + +class AblationWeightedMeanClassifier(nn.Module): + """Full model with cross-attention fusion replaced by weighted means. + + Both branches are kept exactly as in the full model; only the fusion module + is swapped from :class:`FusionModule` (self-attn over tubes + global→locals + cross-attention) to :class:`WeightedMeanFusion` (learned weighted mean over + tubes + learned gate between the two branches). Isolates the contribution of + the attention mechanism in the fusion step. + """ + + def __init__( + self, + # Global branch — identical to the full model + backbone: str, + finetune: bool, + finetune_last_n_blocks: int, + max_frames: int, + global_aggregator_num_layers: int, + global_aggregator_num_heads: int, + global_aggregator_ffn_dim: int, + global_aggregator_dropout: float, + # Local branch — identical to the full model + grid_size: int, + cell_size: int, + tube_length: int, + temporal_stride: int, + local_t_kernel: int, + local_h_patch: int, + local_w_patch: int, + local_embed_dim: int, + local_num_layers: int, + local_num_heads: int, + local_ffn_dim: int, + local_dropout: float, + # Fusion / head + d_fusion: int, + head_hidden_dim: int, + head_dropout: float = 0.0, + img_size: int = 224, + pretrained: bool = True, + ) -> None: + super().__init__() + self.global_branch = GlobalBranch( + backbone=backbone, + finetune=finetune, + finetune_last_n_blocks=finetune_last_n_blocks, + max_frames=max_frames, + aggregator_num_layers=global_aggregator_num_layers, + aggregator_num_heads=global_aggregator_num_heads, + aggregator_ffn_dim=global_aggregator_ffn_dim, + aggregator_dropout=global_aggregator_dropout, + img_size=img_size, + pretrained=pretrained, + ) + self.local_branch = LocalBranch( + grid_size=grid_size, + cell_size=cell_size, + tube_length=tube_length, + temporal_stride=temporal_stride, + t_kernel=local_t_kernel, + h_patch=local_h_patch, + w_patch=local_w_patch, + embed_dim=local_embed_dim, + num_layers=local_num_layers, + num_heads=local_num_heads, + ffn_dim=local_ffn_dim, + dropout=local_dropout, + ) + self.fusion = WeightedMeanFusion( + global_dim=self.global_branch.feat_dim, + local_dim=local_embed_dim, + d_fusion=d_fusion, + ) + self.head = nn.Sequential( + nn.Linear(d_fusion, head_hidden_dim), + nn.GELU(), + nn.Dropout(head_dropout), + nn.Linear(head_hidden_dim, 1), + ) + + def forward(self, patches: Tensor, mask: Tensor) -> Tensor: + global_vec = self.global_branch(patches, mask) + local_tokens, local_mask = self.local_branch(patches, mask) + fused = self.fusion(global_vec, local_tokens, local_mask) + return self.head(fused).squeeze(-1) diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/augment.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/augment.py new file mode 100644 index 00000000..af058304 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/augment.py @@ -0,0 +1,256 @@ +"""Per-tube-consistent augmentation transforms for the temporal classifier. + +See ``docs/specs/2026-04-14-training-augmentation-design.md`` for design. +""" + +from __future__ import annotations + +from collections.abc import Callable + +import torch +from torch import Tensor +from torchvision.transforms.v2 import functional as TVF + + +class SpatialTubeTransform: + """Per-tube-consistent spatial aug (flip + rotation + scale + translate). + + A single set of params is sampled per call and applied identically to + every frame in the tube so motion direction and inter-frame geometry + are preserved. + """ + + def __init__( + self, + flip_prob: float, + rotation_deg: float, + scale_range: tuple[float, float], + translate_frac: float, + ) -> None: + self.flip_prob = flip_prob + self.rotation_deg = rotation_deg + self.scale_range = scale_range + self.translate_frac = translate_frac + + def __call__(self, item: dict) -> dict: + patches: Tensor = item["patches"] # [T, 3, H, W] + _, _, h, w = patches.shape + + # Sample once per tube + do_flip = torch.rand(()).item() < self.flip_prob + angle = float((torch.rand(()).item() * 2 - 1) * self.rotation_deg) + s_lo, s_hi = self.scale_range + scale = float(s_lo + torch.rand(()).item() * (s_hi - s_lo)) + tx = float((torch.rand(()).item() * 2 - 1) * self.translate_frac * w) + ty = float((torch.rand(()).item() * 2 - 1) * self.translate_frac * h) + + if do_flip: + patches = TVF.horizontal_flip(patches) + + # Skip affine call entirely when parameters are no-ops (identity). + is_identity_affine = angle == 0.0 and scale == 1.0 and tx == 0.0 and ty == 0.0 + if not is_identity_affine: + patches = TVF.affine( + patches, + angle=angle, + translate=[tx, ty], + scale=scale, + shear=[0.0, 0.0], + ) + + item["patches"] = patches + return item + + +class PhotometricTubeTransform: + """Per-tube-consistent brightness / contrast / saturation. + + Operates on ``[0, 1]`` tensors (pre-normalization). One set of factors + sampled per call, applied in fixed order (brightness -> contrast -> + saturation) to every frame. + """ + + def __init__( + self, + brightness_range: tuple[float, float], + contrast_range: tuple[float, float], + saturation_range: tuple[float, float], + ) -> None: + self.brightness_range = brightness_range + self.contrast_range = contrast_range + self.saturation_range = saturation_range + + @staticmethod + def _sample(r: tuple[float, float]) -> float: + lo, hi = r + return float(lo + torch.rand(()).item() * (hi - lo)) + + def __call__(self, item: dict) -> dict: + patches: Tensor = item["patches"] # [T, 3, H, W], values in [0, 1] + + b = self._sample(self.brightness_range) + c = self._sample(self.contrast_range) + s = self._sample(self.saturation_range) + + if b != 1.0: + patches = TVF.adjust_brightness(patches, brightness_factor=b) + if c != 1.0: + patches = TVF.adjust_contrast(patches, contrast_factor=c) + if s != 1.0: + patches = TVF.adjust_saturation(patches, saturation_factor=s) + + # Clamp to valid photometric range; adjust_contrast can push slightly + # below 0 / above 1 and the downstream ImageNet normalize expects [0, 1]. + item["patches"] = patches.clamp_(0.0, 1.0) + return item + + +class TemporalTubeTransform: + """Sub-sequence sampling + random stride + per-frame drop with re-compaction. + + Operates on ``(patches: [T, 3, H, W], mask: [T])``. Output valid frames + always occupy positions ``[0..k-1]`` so ``pack_padded_sequence`` (used by + the GRU head) sees a contiguous valid prefix. + """ + + def __init__( + self, + subseq_prob: float, + subseq_min_len: int, + stride_prob: float, + frame_drop_prob: float, + min_valid_after_drop: int, + ) -> None: + self.subseq_prob = subseq_prob + self.subseq_min_len = subseq_min_len + self.stride_prob = stride_prob + self.frame_drop_prob = frame_drop_prob + self.min_valid_after_drop = min_valid_after_drop + + def __call__(self, item: dict) -> dict: + patches: Tensor = item["patches"] # [T, 3, H, W] + mask: Tensor = item["mask"] # [T] bool + + valid_idx = torch.nonzero(mask, as_tuple=False).flatten().tolist() + n = len(valid_idx) + if n == 0: + return item + + # 1. Sub-sequence sampling + if torch.rand(()).item() < self.subseq_prob and n > self.subseq_min_len: + k = int(torch.randint(self.subseq_min_len, n + 1, (1,)).item()) + start = int(torch.randint(0, n - k + 1, (1,)).item()) + valid_idx = valid_idx[start : start + k] + + # 2. Random stride + if torch.rand(()).item() < self.stride_prob and len(valid_idx) > 2: + valid_idx = valid_idx[::2] + + # 3. Per-frame drop, clamped to a floor + if self.frame_drop_prob > 0.0 and len(valid_idx) > self.min_valid_after_drop: + keeps = torch.rand(len(valid_idx)) >= self.frame_drop_prob + # Enforce floor: if we dropped too many, randomly restore indices. + n_kept = int(keeps.sum()) + if n_kept < self.min_valid_after_drop: + dropped_positions = torch.nonzero(~keeps, as_tuple=False).flatten() + n_to_restore = self.min_valid_after_drop - n_kept + perm = torch.randperm(len(dropped_positions))[:n_to_restore] + for pos in dropped_positions[perm].tolist(): + keeps[pos] = True + valid_idx = [ + idx + for idx, keep in zip(valid_idx, keeps.tolist(), strict=False) + if keep + ] + + # Re-compact to a fresh padded tensor via one vectorized gather. + out_patches = torch.zeros_like(patches) + out_mask = torch.zeros(mask.shape, dtype=torch.bool, device=mask.device) + k = len(valid_idx) + if k > 0: + idx = torch.as_tensor(valid_idx, dtype=torch.long, device=patches.device) + out_patches[:k] = patches.index_select(0, idx) + out_mask[:k] = True + + item["patches"] = out_patches + item["mask"] = out_mask + return item + + +IMAGENET_MEAN = (0.485, 0.456, 0.406) +IMAGENET_STD = (0.229, 0.224, 0.225) + + +class NormalizeTransform: + """ImageNet normalize of the valid frames in a tube (mask-aware). + + Writes to a fresh output tensor so the caller's input is never mutated. + mean/std are lazily moved to the input tensor's device and dtype. + """ + + def __init__( + self, + mean: tuple[float, float, float] = IMAGENET_MEAN, + std: tuple[float, float, float] = IMAGENET_STD, + ) -> None: + self.mean = torch.tensor(mean).view(3, 1, 1) + self.std = torch.tensor(std).view(3, 1, 1) + + def __call__(self, item: dict) -> dict: + patches: Tensor = item["patches"] + mask: Tensor = item["mask"] + n = int(mask.sum()) + if n > 0: + mean = self.mean.to(patches.device, patches.dtype) + std = self.std.to(patches.device, patches.dtype) + out = patches.clone() + out[:n] = (patches[:n] - mean) / std + item["patches"] = out + return item + + +class ComposeTransform: + """Tiny fixed-order transform composer. Each stage takes and returns a dict.""" + + def __init__(self, stages: list[Callable[[dict], dict]]) -> None: + self.stages = stages + + def __call__(self, item: dict) -> dict: + for stage in self.stages: + item = stage(item) + return item + + +def build_tube_augment(config: dict, train: bool) -> ComposeTransform: + """Build the transform pipeline from the ``augment:`` config section. + + - ``train=False`` or ``config["enabled"]=False`` -> normalize only. + - Otherwise -> spatial -> photometric -> temporal -> normalize. + + A missing ``enabled`` key defaults to ``False`` (disabled). This matches + the defensive default in ``scripts/train.py`` when the top-level + ``augment:`` section is absent from ``params.yaml``. + """ + enabled = bool(config.get("enabled", False)) + if not (train and enabled): + return ComposeTransform([NormalizeTransform()]) + + spatial = SpatialTubeTransform( + flip_prob=float(config["spatial"]["flip_prob"]), + rotation_deg=float(config["spatial"]["rotation_deg"]), + scale_range=tuple(config["spatial"]["scale_range"]), + translate_frac=float(config["spatial"]["translate_frac"]), + ) + photometric = PhotometricTubeTransform( + brightness_range=tuple(config["photometric"]["brightness_range"]), + contrast_range=tuple(config["photometric"]["contrast_range"]), + saturation_range=tuple(config["photometric"]["saturation_range"]), + ) + temporal = TemporalTubeTransform( + subseq_prob=float(config["temporal"]["subseq_prob"]), + subseq_min_len=int(config["temporal"]["subseq_min_len"]), + stride_prob=float(config["temporal"]["stride_prob"]), + frame_drop_prob=float(config["temporal"]["frame_drop_prob"]), + min_valid_after_drop=int(config["temporal"]["min_valid_after_drop"]), + ) + return ComposeTransform([spatial, photometric, temporal, NormalizeTransform()]) diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/classifier.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/classifier.py new file mode 100644 index 00000000..89604340 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/classifier.py @@ -0,0 +1,111 @@ +"""Top-level tube multiscale fusion classifier. + +Combines: + - :class:`GlobalBranch`: per-frame DINOv2 + transformer aggregator -> ``(B, D_g)`` + - :class:`LocalBranch`: spatio-temporal tube extraction + video transformer + -> ``(B, N_tubes, D_l)`` + validity mask ``(B, N_tubes)`` + - :class:`FusionModule`: self-attn on locals + cross-attn (global=Q, locals=KV) + -> ``(B, d_fusion)`` + - 2-layer MLP head -> logit ``(B,)``. +""" + +from __future__ import annotations + +from torch import Tensor, nn + +from .fusion import FusionModule +from .global_branch import GlobalBranch +from .local_branch import LocalBranch + + +class TubeMultiscaleClassifier(nn.Module): + def __init__( + self, + # Global branch + backbone: str, + finetune: bool, + finetune_last_n_blocks: int, + max_frames: int, + global_aggregator_num_layers: int, + global_aggregator_num_heads: int, + global_aggregator_ffn_dim: int, + global_aggregator_dropout: float, + # Local branch + grid_size: int, + cell_size: int, + tube_length: int, + temporal_stride: int, + local_t_kernel: int, + local_h_patch: int, + local_w_patch: int, + local_embed_dim: int, + local_num_layers: int, + local_num_heads: int, + local_ffn_dim: int, + local_dropout: float, + # Fusion + d_fusion: int, + fusion_num_layers: int, + fusion_num_heads: int, + fusion_ffn_dim: int, + fusion_dropout: float, + # Head + head_hidden_dim: int, + head_dropout: float = 0.0, + # Module variants (default = production architecture) + aggregator_kind: str = "transformer", + encoder_kind: str = "tubelet_transformer", + # Misc + img_size: int = 224, + pretrained: bool = True, + ) -> None: + super().__init__() + self.global_branch = GlobalBranch( + backbone=backbone, + finetune=finetune, + finetune_last_n_blocks=finetune_last_n_blocks, + max_frames=max_frames, + aggregator_num_layers=global_aggregator_num_layers, + aggregator_num_heads=global_aggregator_num_heads, + aggregator_ffn_dim=global_aggregator_ffn_dim, + aggregator_dropout=global_aggregator_dropout, + aggregator_kind=aggregator_kind, + img_size=img_size, + pretrained=pretrained, + ) + self.local_branch = LocalBranch( + grid_size=grid_size, + cell_size=cell_size, + tube_length=tube_length, + temporal_stride=temporal_stride, + t_kernel=local_t_kernel, + h_patch=local_h_patch, + w_patch=local_w_patch, + embed_dim=local_embed_dim, + num_layers=local_num_layers, + num_heads=local_num_heads, + ffn_dim=local_ffn_dim, + dropout=local_dropout, + encoder_kind=encoder_kind, + ) + self.fusion = FusionModule( + global_dim=self.global_branch.feat_dim, + local_dim=local_embed_dim, + d_fusion=d_fusion, + num_layers=fusion_num_layers, + num_heads=fusion_num_heads, + ffn_dim=fusion_ffn_dim, + dropout=fusion_dropout, + ) + self.head = nn.Sequential( + nn.Linear(d_fusion, head_hidden_dim), + nn.GELU(), + nn.Dropout(head_dropout), + nn.Linear(head_hidden_dim, 1), + ) + + def forward(self, patches: Tensor, mask: Tensor) -> Tensor: + global_vec = self.global_branch(patches, mask) + local_tokens, local_mask = self.local_branch(patches, mask) + fused = self.fusion(global_vec, local_tokens, local_mask) + return self.head(fused).squeeze(-1) diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/dataset.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/dataset.py new file mode 100644 index 00000000..69f78f9d --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/dataset.py @@ -0,0 +1,92 @@ +"""PyTorch Dataset for the tube multiscale fusion classifier. + +Reads cropped PNG patches produced by ``scripts/build_model_input.py`` and +returns per-tube tensors padded to a fixed length with a boolean mask. +""" + +from __future__ import annotations + +import json +from collections.abc import Callable +from pathlib import Path + +import torch +from PIL import Image +from torch import Tensor +from torch.utils.data import Dataset +from torchvision.transforms.functional import to_tensor + +IMAGENET_MEAN = torch.tensor([0.485, 0.456, 0.406]).view(3, 1, 1) +IMAGENET_STD = torch.tensor([0.229, 0.224, 0.225]).view(3, 1, 1) + + +class TubePatchDataset(Dataset): + """Dataset of cropped tube patches stored as PNG folders. + + Each item: + + .. code-block:: python + + { + "patches": Tensor[max_frames, 3, 224, 224], # float32 + "mask": Tensor[max_frames] bool, # True = real frame + "label": Tensor[] float32, # 0.0 fp, 1.0 smoke + "sequence_id": str, + } + + When ``transform`` is ``None``, patches are ImageNet-normalized in place. + Otherwise patches reach ``transform`` as un-normalized ``[0, 1]`` tensors + and the transform is responsible for normalization as its final step. + + Args: + split_dir: Directory containing ``_index.json`` and one + sub-directory per tube. + max_frames: Pad/truncate length. + transform: Optional callable ``item -> item`` applied after loading. + """ + + def __init__( + self, + split_dir: Path, + max_frames: int, + transform: Callable[[dict], dict] | None = None, + ) -> None: + self.split_dir = Path(split_dir) + self.max_frames = max_frames + self.transform = transform + self.index: list[dict] = json.loads( + (self.split_dir / "_index.json").read_text() + ) + + def __len__(self) -> int: + return len(self.index) + + def __getitem__(self, idx: int) -> dict[str, Tensor | str]: + record = self.index[idx] + seq_id: str = record["sequence_id"] + label_int: int = record["label_int"] + seq_dir = self.split_dir / seq_id + + meta = json.loads((seq_dir / "meta.json").read_text()) + frame_files = [seq_dir / f["filename"] for f in meta["frames"]] + n = min(len(frame_files), self.max_frames) + + patches = torch.zeros(self.max_frames, 3, 224, 224, dtype=torch.float32) + mask = torch.zeros(self.max_frames, dtype=torch.bool) + for i in range(n): + img = Image.open(frame_files[i]).convert("RGB") + patches[i] = to_tensor(img) + mask[i] = True + + item: dict = { + "patches": patches, + "mask": mask, + "label": torch.tensor(float(label_int), dtype=torch.float32), + "sequence_id": seq_id, + } + + if self.transform is None: + item["patches"][:n] = (item["patches"][:n] - IMAGENET_MEAN) / IMAGENET_STD + return item + + return self.transform(item) diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/eval_plots.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/eval_plots.py new file mode 100644 index 00000000..f6610f29 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/eval_plots.py @@ -0,0 +1,105 @@ +"""Shared matplotlib plot helpers for classification eval output.""" + +from pathlib import Path + +import matplotlib.pyplot as plt +import numpy as np +from sklearn.metrics import ( + average_precision_score, + precision_recall_curve, + roc_auc_score, + roc_curve, +) + + +def plot_confusion_matrix( + matrix: np.ndarray, + output_path: Path, + title: str, + normalized: bool, +) -> None: + """Render a 2x2 confusion matrix to ``output_path``. + + Args: + matrix: 2x2 array. Rows = actual (fp, smoke). Cols = predicted. + output_path: PNG path to write. + title: Figure title. + normalized: If True, format cells as percentages; else as integers. + """ + labels = ["fp", "smoke"] + fig, ax = plt.subplots(figsize=(4, 4)) + im = ax.imshow(matrix, cmap="Blues") + fig.colorbar(im, ax=ax) + ax.set_xticks(range(len(labels))) + ax.set_yticks(range(len(labels))) + ax.set_xticklabels(labels) + ax.set_yticklabels(labels) + ax.set_xlabel("predicted") + ax.set_ylabel("actual") + ax.set_title(title) + vmax = float(matrix.max()) if matrix.size else 0.0 + threshold = vmax * 0.5 + for i in range(matrix.shape[0]): + for j in range(matrix.shape[1]): + value = matrix[i, j] + text = f"{value * 100:.1f}%" if normalized else f"{int(value)}" + color = "white" if value > threshold else "black" + ax.text(j, i, text, ha="center", va="center", color=color, fontsize=11) + fig.savefig(output_path, dpi=120, bbox_inches="tight") + plt.close(fig) + + +def plot_pr_curve( + y_true: np.ndarray, + scores: np.ndarray, + output_path: Path, + title: str = "PR", +) -> None: + """Render a precision-recall curve. Title includes AP if computable. + + When ``y_true`` contains no positives, writes a placeholder figure + (blank axes + informative title) instead of calling sklearn, which + would return a degenerate curve. + """ + fig, ax = plt.subplots(figsize=(5, 5)) + ax.set_xlabel("recall") + ax.set_ylabel("precision") + ax.set_xlim(0, 1) + ax.set_ylim(0, 1) + if y_true.sum() > 0: + ap = float(average_precision_score(y_true, scores)) + precision, recall, _ = precision_recall_curve(y_true, scores) + ax.plot(recall, precision) + ax.set_title(f"{title} (AP={ap:.3f})") + else: + ax.set_title(f"{title} (no positives)") + fig.savefig(output_path, dpi=120, bbox_inches="tight") + plt.close(fig) + + +def plot_roc_curve( + y_true: np.ndarray, + scores: np.ndarray, + output_path: Path, + title: str = "ROC", +) -> None: + """Render a ROC curve. Title includes AUC if computable. + + When ``y_true`` contains only one class, writes a placeholder figure + (diagonal reference only + informative title) instead of calling + sklearn, whose ``roc_curve`` returns NaN on single-class input. + """ + fig, ax = plt.subplots(figsize=(5, 5)) + ax.plot([0, 1], [0, 1], "k--", alpha=0.4) + ax.set_xlabel("false positive rate") + ax.set_ylabel("true positive rate") + n_pos = int(y_true.sum()) + if 0 < n_pos < len(y_true): + auc = float(roc_auc_score(y_true, scores)) + fpr, tpr, _ = roc_curve(y_true, scores) + ax.plot(fpr, tpr) + ax.set_title(f"{title} (AUC={auc:.3f})") + else: + ax.set_title(f"{title} (single class)") + fig.savefig(output_path, dpi=120, bbox_inches="tight") + plt.close(fig) diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/fusion.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/fusion.py new file mode 100644 index 00000000..429da637 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/fusion.py @@ -0,0 +1,204 @@ +"""Fusion module: self-attention over local tubes + cross-attention with global. + +Takes the global context vector ``(B, D_global)`` and local tube embeddings +``(B, N_tubes, D_local)`` plus a ``(B, N_tubes)`` validity mask, projects both +to a shared ``d_fusion`` width, and runs ``num_layers`` decoder-style blocks: + + 1. Self-attention over local tube tokens (with key-padding mask). + 2. Cross-attention: global token = query, local tubes = key/value. + 3. FFN on the global token. + +Returns the updated ``(B, d_fusion)`` global representation. +""" + +from __future__ import annotations + +import torch +from torch import Tensor, nn + + +class _FusionBlock(nn.Module): + """One layer: self-attn on locals + cross-attn (global=Q, locals=KV) + FFN.""" + + def __init__( + self, + d_model: int, + num_heads: int, + ffn_dim: int, + dropout: float, + ) -> None: + super().__init__() + # Self-attention over local tube tokens. + self.norm_local = nn.LayerNorm(d_model) + self.self_attn = nn.MultiheadAttention( + embed_dim=d_model, + num_heads=num_heads, + dropout=dropout, + batch_first=True, + ) + self.norm_local_ffn = nn.LayerNorm(d_model) + self.local_ffn = nn.Sequential( + nn.Linear(d_model, ffn_dim), + nn.GELU(), + nn.Dropout(dropout), + nn.Linear(ffn_dim, d_model), + nn.Dropout(dropout), + ) + + # Cross-attention: global queries locals. + self.norm_q = nn.LayerNorm(d_model) + self.norm_kv = nn.LayerNorm(d_model) + self.cross_attn = nn.MultiheadAttention( + embed_dim=d_model, + num_heads=num_heads, + dropout=dropout, + batch_first=True, + ) + self.norm_g_ffn = nn.LayerNorm(d_model) + self.g_ffn = nn.Sequential( + nn.Linear(d_model, ffn_dim), + nn.GELU(), + nn.Dropout(dropout), + nn.Linear(ffn_dim, d_model), + nn.Dropout(dropout), + ) + + def forward( + self, + global_tok: Tensor, + local_tokens: Tensor, + local_mask: Tensor, + ) -> tuple[Tensor, Tensor]: + """global_tok ``(B, 1, D)``, local_tokens ``(B, N, D)``, mask ``(B, N)``. + + Returns updated ``(global_tok, local_tokens)``. + """ + key_padding = ~local_mask # True = ignore. + + # Self-attention on local tube tokens. + h = self.norm_local(local_tokens) + attn_out, _ = self.self_attn( + h, h, h, key_padding_mask=key_padding, need_weights=False + ) + local_tokens = local_tokens + attn_out + local_tokens = local_tokens + self.local_ffn(self.norm_local_ffn(local_tokens)) + + # Cross-attention: global queries locals. + q = self.norm_q(global_tok) + kv = self.norm_kv(local_tokens) + cross_out, _ = self.cross_attn( + q, kv, kv, key_padding_mask=key_padding, need_weights=False + ) + global_tok = global_tok + cross_out + global_tok = global_tok + self.g_ffn(self.norm_g_ffn(global_tok)) + return global_tok, local_tokens + + +class FusionModule(nn.Module): + """Project global + local to ``d_fusion``, then stack ``num_layers`` blocks.""" + + def __init__( + self, + global_dim: int, + local_dim: int, + d_fusion: int, + num_layers: int, + num_heads: int, + ffn_dim: int, + dropout: float, + ) -> None: + super().__init__() + self.global_proj: nn.Module = ( + nn.Identity() if global_dim == d_fusion else nn.Linear(global_dim, d_fusion) + ) + self.local_proj: nn.Module = ( + nn.Identity() if local_dim == d_fusion else nn.Linear(local_dim, d_fusion) + ) + self.blocks = nn.ModuleList( + [ + _FusionBlock( + d_model=d_fusion, + num_heads=num_heads, + ffn_dim=ffn_dim, + dropout=dropout, + ) + for _ in range(num_layers) + ] + ) + self.final_norm = nn.LayerNorm(d_fusion) + self.d_fusion = d_fusion + + def forward( + self, + global_vec: Tensor, + local_tokens: Tensor, + local_mask: Tensor, + ) -> Tensor: + """``global_vec: (B, D_global)``, ``local_tokens: (B, N, D_local)``, + ``local_mask: (B, N)`` -> ``(B, d_fusion)``. + + If a sample has *no* valid local tubes (all masked), key-padding would + produce NaNs in attention; we guard against that by treating empty + masks as fully visible (the global readout is then just self-mixed). + """ + g = self.global_proj(global_vec).unsqueeze(1) # (B, 1, D) + ltok = self.local_proj(local_tokens) + # Guard: if any row has zero valid locals, keep it visible to avoid NaN. + safe_mask = local_mask.clone() + empty_rows = ~safe_mask.any(dim=1) + if torch.any(empty_rows): + safe_mask[empty_rows] = True + for block in self.blocks: + g, ltok = block(g, ltok, safe_mask) + return self.final_norm(g.squeeze(1)) + + +class WeightedMeanFusion(nn.Module): + """Attention-free fusion ablation: weighted means instead of cross-attention. + + Replaces :class:`FusionModule` (self-attn over tubes + global→locals + cross-attn) with two learned weighted means: + + 1. **Over local tubes:** a per-token score (Linear→scalar) is softmaxed over + the valid tubes to give a weighted mean ``local_pooled`` (i.e. learned + attention-pooling — a weighted mean, no token-token attention). + 2. **Between branches:** a learnable 2-vector is softmaxed into + ``[w_global, w_local]`` and used to take a weighted mean of the global + vector and ``local_pooled``. + + Same input/output signature as :class:`FusionModule` so it is a drop-in + fusion swap for the ablation. + """ + + def __init__(self, global_dim: int, local_dim: int, d_fusion: int) -> None: + super().__init__() + self.global_proj: nn.Module = ( + nn.Identity() if global_dim == d_fusion else nn.Linear(global_dim, d_fusion) + ) + self.local_proj: nn.Module = ( + nn.Identity() if local_dim == d_fusion else nn.Linear(local_dim, d_fusion) + ) + self.local_score = nn.Linear(d_fusion, 1) + self.branch_weights = nn.Parameter(torch.zeros(2)) + self.final_norm = nn.LayerNorm(d_fusion) + self.d_fusion = d_fusion + + def forward( + self, + global_vec: Tensor, + local_tokens: Tensor, + local_mask: Tensor, + ) -> Tensor: + g = self.global_proj(global_vec) # (B, d) + lt = self.local_proj(local_tokens) # (B, N, d) + + scores = self.local_score(lt).squeeze(-1) # (B, N) + scores = scores.masked_fill(~local_mask, float("-inf")) + weights = torch.softmax(scores, dim=1) + # All-masked rows softmax to NaN; zero them so local contributes nothing. + weights = torch.nan_to_num(weights, nan=0.0) + local_pooled = (weights.unsqueeze(-1) * lt).sum(dim=1) # (B, d) + + bw = torch.softmax(self.branch_weights, dim=0) # (2,) + fused = bw[0] * g + bw[1] * local_pooled + return self.final_norm(fused) diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/global_branch.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/global_branch.py new file mode 100644 index 00000000..1670f224 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/global_branch.py @@ -0,0 +1,339 @@ +"""Global branch: per-frame DINOv2 + sequence transformer aggregator. + +Embeds each of ``T`` frames independently with a timm backbone (default +DINOv2 ViT-S/14), then aggregates the resulting ``(B, T, D)`` sequence into +a single ``(B, D)`` global context vector via a small Transformer encoder +with a learnable ``[CLS]`` token. +""" + +from __future__ import annotations + +import timm +import torch +from torch import Tensor, nn +from torch.nn.utils.rnn import pack_padded_sequence + + +class TimmBackbone(nn.Module): + """Per-frame feature extractor backed by a pretrained timm model. + + Ported from ``bbox-tube-motion-fusion/temporal_classifier.py``. + Supports either fully-frozen mode or finetuning the last ``N`` blocks + (resolved per backbone family). + """ + + def __init__( + self, + name: str, + pretrained: bool = True, + finetune: bool = False, + finetune_last_n_blocks: int = 0, + global_pool: str = "token", + img_size: int | None = 224, + ) -> None: + super().__init__() + extra = {"img_size": img_size} if img_size is not None else {} + self.backbone = timm.create_model( + name, + pretrained=pretrained, + num_classes=0, + global_pool=global_pool, + **extra, + ) + self.feat_dim: int = self.backbone.num_features + self.finetune = finetune + self.name = name + + if not finetune: + for p in self.backbone.parameters(): + p.requires_grad = False + self.backbone.eval() + return + + for p in self.backbone.parameters(): + p.requires_grad = False + self._unfreeze_last_n_blocks(finetune_last_n_blocks) + + def _unfreeze_last_n_blocks(self, n: int) -> None: + if n <= 0: + return + name = self.name + if name.startswith("resnet"): + stages = [getattr(self.backbone, f"layer{i}") for i in range(1, 5)] + elif name.startswith("convnext"): + stages = list(self.backbone.stages) + elif name.startswith("vit_"): + stages = list(self.backbone.blocks) + else: + stage_names = [n_ for n_, _ in self.backbone.named_children()] + raise NotImplementedError( + f"finetune=True is not implemented for backbone family " + f"{name!r}. Top-level children: {stage_names}." + ) + for stage in stages[-n:]: + for p in stage.parameters(): + p.requires_grad = True + + def train(self, mode: bool = True) -> TimmBackbone: + super().train(mode) + if not self.finetune: + self.backbone.eval() + else: + for module in self.backbone.modules(): + if not any(p.requires_grad for p in module.parameters(recurse=False)): + has_trainable_descendant = any( + p.requires_grad for p in module.parameters() + ) + if not has_trainable_descendant: + module.eval() + return self + + def forward(self, x: Tensor) -> Tensor: + if not self.finetune: + with torch.no_grad(): + return self.backbone(x) + return self.backbone(x) + + +class GlobalAggregator(nn.Module): + """Aggregates a ``(B, T, D)`` per-frame sequence into a single ``(B, D)`` vector. + + Architecture: learnable ``[CLS]`` token + learned positional embeddings + + Transformer encoder. The CLS token's final state is returned. + """ + + def __init__( + self, + feat_dim: int, + num_layers: int, + num_heads: int, + ffn_dim: int, + dropout: float, + max_frames: int, + ) -> None: + super().__init__() + self.cls_token = nn.Parameter(torch.zeros(1, 1, feat_dim)) + nn.init.trunc_normal_(self.cls_token, std=0.02) + self.pos_embed = nn.Parameter(torch.zeros(1, max_frames + 1, feat_dim)) + nn.init.trunc_normal_(self.pos_embed, std=0.02) + encoder_layer = nn.TransformerEncoderLayer( + d_model=feat_dim, + nhead=num_heads, + dim_feedforward=ffn_dim, + dropout=dropout, + batch_first=True, + norm_first=True, + activation="gelu", + ) + self.encoder = nn.TransformerEncoder(encoder_layer, num_layers=num_layers) + self.max_frames = max_frames + + def forward(self, feats: Tensor, mask: Tensor) -> Tensor: + b, t, _ = feats.shape + if t > self.max_frames: + raise ValueError( + f"GlobalAggregator received T={t} > max_frames={self.max_frames}" + ) + cls = self.cls_token.expand(b, 1, -1) + x = torch.cat([cls, feats], dim=1) + x = x + self.pos_embed[:, : t + 1, :] + cls_real = torch.ones(b, 1, dtype=torch.bool, device=mask.device) + real_mask = torch.cat([cls_real, mask], dim=1) + key_padding_mask = ~real_mask + out = self.encoder(x, src_key_padding_mask=key_padding_mask) + return out[:, 0, :] + + +class RNNAggregator(nn.Module): + """LSTM/GRU over the per-frame sequence; returns the final hidden state. + + Uses packed sequences so padded frames are ignored. ``hidden_size`` is set + to ``feat_dim`` so the output matches the rest of the architecture. + """ + + def __init__( + self, + feat_dim: int, + kind: str, + num_layers: int = 1, + dropout: float = 0.0, + ) -> None: + super().__init__() + rnn_cls = {"lstm": nn.LSTM, "gru": nn.GRU}[kind] + self.kind = kind + self.rnn = rnn_cls( + input_size=feat_dim, + hidden_size=feat_dim, + num_layers=num_layers, + batch_first=True, + dropout=dropout if num_layers > 1 else 0.0, + ) + + def forward(self, feats: Tensor, mask: Tensor) -> Tensor: + lengths = mask.sum(dim=1).clamp(min=1).cpu() + packed = pack_padded_sequence( + feats, lengths, batch_first=True, enforce_sorted=False + ) + if self.kind == "lstm": + _, (h_n, _) = self.rnn(packed) + else: + _, h_n = self.rnn(packed) + return h_n[-1] # (B, feat_dim) + + +class MLPAggregator(nn.Module): + """Flatten the (masked) ``T×D`` sequence and run an MLP -> ``(B, D)``. + + Padded frames are zeroed before flattening. Sees the whole sequence at once + but has no inductive bias for temporal order beyond position-in-vector. + """ + + def __init__( + self, + feat_dim: int, + max_frames: int, + hidden: int = 1024, + dropout: float = 0.1, + ) -> None: + super().__init__() + self.max_frames = max_frames + self.net = nn.Sequential( + nn.Linear(feat_dim * max_frames, hidden), + nn.GELU(), + nn.Dropout(dropout), + nn.Linear(hidden, feat_dim), + ) + + def forward(self, feats: Tensor, mask: Tensor) -> Tensor: + feats = feats * mask.unsqueeze(-1).to(feats.dtype) + return self.net(feats.reshape(feats.shape[0], -1)) + + +class Conv1DAggregator(nn.Module): + """1D temporal convolutions over the (B, D, T) sequence + masked mean pool.""" + + def __init__( + self, + feat_dim: int, + num_layers: int = 2, + kernel: int = 3, + dropout: float = 0.0, + ) -> None: + super().__init__() + layers: list[nn.Module] = [] + for _ in range(num_layers): + layers += [ + nn.Conv1d(feat_dim, feat_dim, kernel, padding=kernel // 2), + nn.GELU(), + nn.Dropout(dropout), + ] + self.conv = nn.Sequential(*layers) + + def forward(self, feats: Tensor, mask: Tensor) -> Tensor: + x = self.conv(feats.transpose(1, 2)).transpose(1, 2) # (B, T, D) + m = mask.unsqueeze(-1).to(x.dtype) + return (x * m).sum(dim=1) / m.sum(dim=1).clamp(min=1.0) + + +class LinearWeightedAvgAggregator(nn.Module): + """Per-frame Linear projection + learned weighted average over time. + + A lightweight attention-pool with no token-token interaction: each frame is + projected, scored to a scalar, softmax-normalized over the valid frames, and + combined by weighted mean. + """ + + def __init__(self, feat_dim: int) -> None: + super().__init__() + self.proj = nn.Linear(feat_dim, feat_dim) + self.score = nn.Linear(feat_dim, 1) + + def forward(self, feats: Tensor, mask: Tensor) -> Tensor: + h = self.proj(feats) # (B, T, D) + s = self.score(h).squeeze(-1) # (B, T) + s = s.masked_fill(~mask, float("-inf")) + w = torch.softmax(s, dim=1) + w = torch.nan_to_num(w, nan=0.0) + return (w.unsqueeze(-1) * h).sum(dim=1) # (B, D) + + +def build_aggregator( + kind: str, + feat_dim: int, + max_frames: int, + *, + num_layers: int, + num_heads: int, + ffn_dim: int, + dropout: float, + rnn_layers: int = 1, + mlp_hidden: int = 1024, + conv_layers: int = 2, + conv_kernel: int = 3, +) -> nn.Module: + """Construct a temporal aggregator ``(B, T, D), mask -> (B, D)`` by name.""" + if kind == "transformer": + return GlobalAggregator( + feat_dim=feat_dim, + num_layers=num_layers, + num_heads=num_heads, + ffn_dim=ffn_dim, + dropout=dropout, + max_frames=max_frames, + ) + if kind in ("lstm", "gru"): + return RNNAggregator( + feat_dim, kind=kind, num_layers=rnn_layers, dropout=dropout + ) + if kind == "mlp": + return MLPAggregator(feat_dim, max_frames, hidden=mlp_hidden, dropout=dropout) + if kind == "conv1d": + return Conv1DAggregator( + feat_dim, num_layers=conv_layers, kernel=conv_kernel, dropout=dropout + ) + if kind == "linear_wavg": + return LinearWeightedAvgAggregator(feat_dim) + raise ValueError(f"unknown aggregator kind {kind!r}") + + +class GlobalBranch(nn.Module): + """DINOv2 per-frame embeddings + a temporal aggregator -> ``(B, D)``.""" + + def __init__( + self, + backbone: str, + finetune: bool, + finetune_last_n_blocks: int, + max_frames: int, + aggregator_num_layers: int, + aggregator_num_heads: int, + aggregator_ffn_dim: int, + aggregator_dropout: float, + aggregator_kind: str = "transformer", + img_size: int = 224, + pretrained: bool = True, + ) -> None: + super().__init__() + self.backbone = TimmBackbone( + name=backbone, + pretrained=pretrained, + finetune=finetune, + finetune_last_n_blocks=finetune_last_n_blocks, + img_size=img_size, + ) + self.feat_dim = self.backbone.feat_dim + self.aggregator = build_aggregator( + aggregator_kind, + feat_dim=self.feat_dim, + max_frames=max_frames, + num_layers=aggregator_num_layers, + num_heads=aggregator_num_heads, + ffn_dim=aggregator_ffn_dim, + dropout=aggregator_dropout, + ) + + def forward(self, patches: Tensor, mask: Tensor) -> Tensor: + b, t, c, h, w = patches.shape + feats = self.backbone(patches.reshape(b * t, c, h, w)) + feats = feats.reshape(b, t, self.feat_dim) + return self.aggregator(feats, mask) diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/lit_ablation.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/lit_ablation.py new file mode 100644 index 00000000..f3fcc0f0 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/lit_ablation.py @@ -0,0 +1,345 @@ +"""Lightning wrapper for the no-temporal-module ablation classifier. + +Mirrors ``LitTubeMultiscaleClassifier`` exactly (BCE, AdamW, cosine warmup, +F1 metric logging) so the two models are directly comparable. There is no +backbone to fine-tune here (the global DINOv2 branch is removed), so a single +parameter group is used. +""" + +from __future__ import annotations + +import math + +import lightning as L +import torch +from torch import Tensor + +from .ablation_classifier import ( + AblationNoSpatialClassifier, + AblationNoTemporalClassifier, + AblationWeightedMeanClassifier, +) + + +class LitAblationNoTemporal(L.LightningModule): + def __init__( + self, + grid_size: int, + cell_size: int, + tube_length: int, + temporal_stride: int, + local_t_kernel: int, + local_h_patch: int, + local_w_patch: int, + local_embed_dim: int, + local_num_layers: int, + local_num_heads: int, + local_ffn_dim: int, + local_dropout: float, + d_fusion: int, + fusion_num_layers: int, + fusion_num_heads: int, + fusion_ffn_dim: int, + fusion_dropout: float, + head_hidden_dim: int, + head_dropout: float, + query_dim: int, + learning_rate: float, + weight_decay: float, + encoder_kind: str = "tubelet_transformer", + use_cosine_warmup: bool = False, + warmup_frac: float = 0.05, + ) -> None: + super().__init__() + self.save_hyperparameters() + self.model = AblationNoTemporalClassifier( + grid_size=grid_size, + cell_size=cell_size, + tube_length=tube_length, + temporal_stride=temporal_stride, + local_t_kernel=local_t_kernel, + local_h_patch=local_h_patch, + local_w_patch=local_w_patch, + local_embed_dim=local_embed_dim, + local_num_layers=local_num_layers, + local_num_heads=local_num_heads, + local_ffn_dim=local_ffn_dim, + local_dropout=local_dropout, + d_fusion=d_fusion, + fusion_num_layers=fusion_num_layers, + fusion_num_heads=fusion_num_heads, + fusion_ffn_dim=fusion_ffn_dim, + fusion_dropout=fusion_dropout, + head_hidden_dim=head_hidden_dim, + head_dropout=head_dropout, + query_dim=query_dim, + encoder_kind=encoder_kind, + ) + self.loss_fn = torch.nn.BCEWithLogitsLoss() + self.learning_rate = learning_rate + self.weight_decay = weight_decay + self.use_cosine_warmup = use_cosine_warmup + self.warmup_frac = warmup_frac + self._val_preds: list[float] = [] + self._val_labels: list[float] = [] + + def forward(self, patches: Tensor, mask: Tensor) -> Tensor: + return self.model(patches, mask) + + def training_step(self, batch: dict, batch_idx: int) -> Tensor: + logits = self(batch["patches"], batch["mask"]) + loss = self.loss_fn(logits, batch["label"]) + self.log("train/loss", loss, prog_bar=True, batch_size=logits.shape[0]) + return loss + + def validation_step(self, batch: dict, batch_idx: int) -> None: + logits = self(batch["patches"], batch["mask"]) + loss = self.loss_fn(logits, batch["label"]) + probs = torch.sigmoid(logits).detach().cpu() + labels = batch["label"].detach().cpu() + self._val_preds.extend(probs.tolist()) + self._val_labels.extend(labels.tolist()) + self.log("val/loss", loss, prog_bar=True, batch_size=logits.shape[0]) + + def on_validation_epoch_end(self) -> None: + if not self._val_preds: + return + probs = torch.tensor(self._val_preds) + labels = torch.tensor(self._val_labels) + preds = (probs > 0.5).float() + tp = ((preds == 1) & (labels == 1)).sum().float() + fp = ((preds == 1) & (labels == 0)).sum().float() + fn = ((preds == 0) & (labels == 1)).sum().float() + tn = ((preds == 0) & (labels == 0)).sum().float() + acc = (tp + tn) / (tp + tn + fp + fn).clamp(min=1) + prec = tp / (tp + fp).clamp(min=1) + rec = tp / (tp + fn).clamp(min=1) + f1 = 2 * prec * rec / (prec + rec).clamp(min=1e-8) + self.log("val/accuracy", acc, prog_bar=True) + self.log("val/precision", prec) + self.log("val/recall", rec) + self.log("val/f1", f1, prog_bar=True) + self._val_preds.clear() + self._val_labels.clear() + + def configure_optimizers(self): + optimizer = torch.optim.AdamW( + [p for p in self.model.parameters() if p.requires_grad], + lr=self.learning_rate, + weight_decay=self.weight_decay, + ) + if not self.use_cosine_warmup: + return optimizer + + total_steps = int(self.trainer.estimated_stepping_batches) + warmup_steps = max(1, int(total_steps * self.warmup_frac)) + + def lr_lambda(step: int) -> float: + if step < warmup_steps: + return step / warmup_steps + progress = (step - warmup_steps) / max(1, total_steps - warmup_steps) + return 0.5 * (1.0 + math.cos(math.pi * progress)) + + scheduler = torch.optim.lr_scheduler.LambdaLR(optimizer, lr_lambda) + return { + "optimizer": optimizer, + "lr_scheduler": {"scheduler": scheduler, "interval": "step"}, + } + + +class LitAblationGlobal(L.LightningModule): + """Lightning wrapper for the global-branch ablations. + + Handles two variants that both retain the global DINOv2 branch (and thus a + fine-tunable backbone with a separate LR): + + - ``no_spatial``: :class:`AblationNoSpatialClassifier` (global only) + - ``weighted_mean``: :class:`AblationWeightedMeanClassifier` + (cross-attention fusion → weighted means) + """ + + def __init__( + self, + variant: str, + backbone: str, + max_frames: int, + global_aggregator_num_layers: int, + global_aggregator_num_heads: int, + global_aggregator_ffn_dim: int, + global_aggregator_dropout: float, + head_hidden_dim: int, + head_dropout: float, + learning_rate: float, + weight_decay: float, + # local + fusion (only used by weighted_mean) + grid_size: int = 2, + cell_size: int = 112, + tube_length: int = 4, + temporal_stride: int = 2, + local_t_kernel: int = 2, + local_h_patch: int = 14, + local_w_patch: int = 14, + local_embed_dim: int = 384, + local_num_layers: int = 2, + local_num_heads: int = 6, + local_ffn_dim: int = 1536, + local_dropout: float = 0.1, + d_fusion: int = 384, + finetune: bool = False, + finetune_last_n_blocks: int = 0, + backbone_lr: float | None = None, + aggregator_kind: str = "transformer", + img_size: int = 224, + pretrained: bool = True, + use_cosine_warmup: bool = False, + warmup_frac: float = 0.05, + ) -> None: + super().__init__() + self.save_hyperparameters() + if variant == "no_spatial": + self.model: torch.nn.Module = AblationNoSpatialClassifier( + backbone=backbone, + finetune=finetune, + finetune_last_n_blocks=finetune_last_n_blocks, + max_frames=max_frames, + global_aggregator_num_layers=global_aggregator_num_layers, + global_aggregator_num_heads=global_aggregator_num_heads, + global_aggregator_ffn_dim=global_aggregator_ffn_dim, + global_aggregator_dropout=global_aggregator_dropout, + head_hidden_dim=head_hidden_dim, + head_dropout=head_dropout, + aggregator_kind=aggregator_kind, + img_size=img_size, + pretrained=pretrained, + ) + elif variant == "weighted_mean": + self.model = AblationWeightedMeanClassifier( + backbone=backbone, + finetune=finetune, + finetune_last_n_blocks=finetune_last_n_blocks, + max_frames=max_frames, + global_aggregator_num_layers=global_aggregator_num_layers, + global_aggregator_num_heads=global_aggregator_num_heads, + global_aggregator_ffn_dim=global_aggregator_ffn_dim, + global_aggregator_dropout=global_aggregator_dropout, + grid_size=grid_size, + cell_size=cell_size, + tube_length=tube_length, + temporal_stride=temporal_stride, + local_t_kernel=local_t_kernel, + local_h_patch=local_h_patch, + local_w_patch=local_w_patch, + local_embed_dim=local_embed_dim, + local_num_layers=local_num_layers, + local_num_heads=local_num_heads, + local_ffn_dim=local_ffn_dim, + local_dropout=local_dropout, + d_fusion=d_fusion, + head_hidden_dim=head_hidden_dim, + head_dropout=head_dropout, + img_size=img_size, + pretrained=pretrained, + ) + else: + raise ValueError(f"unknown variant {variant!r}") + + self.loss_fn = torch.nn.BCEWithLogitsLoss() + self.learning_rate = learning_rate + self.weight_decay = weight_decay + self.finetune = finetune + self.backbone_lr = backbone_lr + self.use_cosine_warmup = use_cosine_warmup + self.warmup_frac = warmup_frac + self._val_preds: list[float] = [] + self._val_labels: list[float] = [] + + def forward(self, patches: Tensor, mask: Tensor) -> Tensor: + return self.model(patches, mask) + + def training_step(self, batch: dict, batch_idx: int) -> Tensor: + logits = self(batch["patches"], batch["mask"]) + loss = self.loss_fn(logits, batch["label"]) + self.log("train/loss", loss, prog_bar=True, batch_size=logits.shape[0]) + return loss + + def validation_step(self, batch: dict, batch_idx: int) -> None: + logits = self(batch["patches"], batch["mask"]) + loss = self.loss_fn(logits, batch["label"]) + self._val_preds.extend(torch.sigmoid(logits).detach().cpu().tolist()) + self._val_labels.extend(batch["label"].detach().cpu().tolist()) + self.log("val/loss", loss, prog_bar=True, batch_size=logits.shape[0]) + + def on_validation_epoch_end(self) -> None: + if not self._val_preds: + return + probs = torch.tensor(self._val_preds) + labels = torch.tensor(self._val_labels) + preds = (probs > 0.5).float() + tp = ((preds == 1) & (labels == 1)).sum().float() + fp = ((preds == 1) & (labels == 0)).sum().float() + fn = ((preds == 0) & (labels == 1)).sum().float() + tn = ((preds == 0) & (labels == 0)).sum().float() + acc = (tp + tn) / (tp + tn + fp + fn).clamp(min=1) + prec = tp / (tp + fp).clamp(min=1) + rec = tp / (tp + fn).clamp(min=1) + f1 = 2 * prec * rec / (prec + rec).clamp(min=1e-8) + self.log("val/accuracy", acc, prog_bar=True) + self.log("val/precision", prec) + self.log("val/recall", rec) + self.log("val/f1", f1, prog_bar=True) + self._val_preds.clear() + self._val_labels.clear() + + def _non_backbone_params(self) -> list[torch.nn.Parameter]: + backbone_ids = {id(p) for p in self.model.global_branch.backbone.parameters()} + return [ + p + for p in self.model.parameters() + if p.requires_grad and id(p) not in backbone_ids + ] + + def configure_optimizers(self): + non_backbone = self._non_backbone_params() + if not self.finetune: + optimizer = torch.optim.AdamW( + non_backbone, lr=self.learning_rate, weight_decay=self.weight_decay + ) + else: + if self.backbone_lr is None: + raise ValueError("backbone_lr must be set when finetune=True") + backbone_params = [ + p + for p in self.model.global_branch.backbone.parameters() + if p.requires_grad + ] + optimizer = torch.optim.AdamW( + [ + { + "params": non_backbone, + "lr": self.learning_rate, + "weight_decay": self.weight_decay, + }, + { + "params": backbone_params, + "lr": self.backbone_lr, + "weight_decay": self.weight_decay, + }, + ] + ) + if not self.use_cosine_warmup: + return optimizer + + total_steps = int(self.trainer.estimated_stepping_batches) + warmup_steps = max(1, int(total_steps * self.warmup_frac)) + + def lr_lambda(step: int) -> float: + if step < warmup_steps: + return step / warmup_steps + progress = (step - warmup_steps) / max(1, total_steps - warmup_steps) + return 0.5 * (1.0 + math.cos(math.pi * progress)) + + scheduler = torch.optim.lr_scheduler.LambdaLR(optimizer, lr_lambda) + return { + "optimizer": optimizer, + "lr_scheduler": {"scheduler": scheduler, "interval": "step"}, + } diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/lit_module.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/lit_module.py new file mode 100644 index 00000000..fd2537fa --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/lit_module.py @@ -0,0 +1,205 @@ +"""PyTorch Lightning wrapper around :class:`TubeMultiscaleClassifier`.""" + +from __future__ import annotations + +import math + +import lightning as L +import torch +from torch import Tensor + +from .classifier import TubeMultiscaleClassifier + + +class LitTubeMultiscaleClassifier(L.LightningModule): + """BCE loss; AdamW with two param groups when finetuning the backbone. + + Logs train/val loss, accuracy, precision, recall, F1. + """ + + def __init__( + self, + backbone: str, + max_frames: int, + # Global aggregator + global_aggregator_num_layers: int, + global_aggregator_num_heads: int, + global_aggregator_ffn_dim: int, + global_aggregator_dropout: float, + # Local branch + grid_size: int, + cell_size: int, + tube_length: int, + temporal_stride: int, + local_t_kernel: int, + local_h_patch: int, + local_w_patch: int, + local_embed_dim: int, + local_num_layers: int, + local_num_heads: int, + local_ffn_dim: int, + local_dropout: float, + # Fusion + d_fusion: int, + fusion_num_layers: int, + fusion_num_heads: int, + fusion_ffn_dim: int, + fusion_dropout: float, + # Head + head_hidden_dim: int, + head_dropout: float, + # Training + learning_rate: float, + weight_decay: float, + finetune: bool = False, + finetune_last_n_blocks: int = 0, + backbone_lr: float | None = None, + aggregator_kind: str = "transformer", + encoder_kind: str = "tubelet_transformer", + img_size: int = 224, + pretrained: bool = True, + use_cosine_warmup: bool = False, + warmup_frac: float = 0.05, + ) -> None: + super().__init__() + self.save_hyperparameters() + self.model = TubeMultiscaleClassifier( + backbone=backbone, + finetune=finetune, + finetune_last_n_blocks=finetune_last_n_blocks, + max_frames=max_frames, + global_aggregator_num_layers=global_aggregator_num_layers, + global_aggregator_num_heads=global_aggregator_num_heads, + global_aggregator_ffn_dim=global_aggregator_ffn_dim, + global_aggregator_dropout=global_aggregator_dropout, + grid_size=grid_size, + cell_size=cell_size, + tube_length=tube_length, + temporal_stride=temporal_stride, + local_t_kernel=local_t_kernel, + local_h_patch=local_h_patch, + local_w_patch=local_w_patch, + local_embed_dim=local_embed_dim, + local_num_layers=local_num_layers, + local_num_heads=local_num_heads, + local_ffn_dim=local_ffn_dim, + local_dropout=local_dropout, + d_fusion=d_fusion, + fusion_num_layers=fusion_num_layers, + fusion_num_heads=fusion_num_heads, + fusion_ffn_dim=fusion_ffn_dim, + fusion_dropout=fusion_dropout, + head_hidden_dim=head_hidden_dim, + head_dropout=head_dropout, + aggregator_kind=aggregator_kind, + encoder_kind=encoder_kind, + img_size=img_size, + pretrained=pretrained, + ) + self.loss_fn = torch.nn.BCEWithLogitsLoss() + self.learning_rate = learning_rate + self.weight_decay = weight_decay + self.finetune = finetune + self.backbone_lr = backbone_lr + self.use_cosine_warmup = use_cosine_warmup + self.warmup_frac = warmup_frac + self._val_preds: list[float] = [] + self._val_labels: list[float] = [] + + def forward(self, patches: Tensor, mask: Tensor) -> Tensor: + return self.model(patches, mask) + + def training_step(self, batch: dict, batch_idx: int) -> Tensor: + logits = self(batch["patches"], batch["mask"]) + loss = self.loss_fn(logits, batch["label"]) + self.log("train/loss", loss, prog_bar=True, batch_size=logits.shape[0]) + return loss + + def validation_step(self, batch: dict, batch_idx: int) -> None: + logits = self(batch["patches"], batch["mask"]) + loss = self.loss_fn(logits, batch["label"]) + probs = torch.sigmoid(logits).detach().cpu() + labels = batch["label"].detach().cpu() + self._val_preds.extend(probs.tolist()) + self._val_labels.extend(labels.tolist()) + self.log("val/loss", loss, prog_bar=True, batch_size=logits.shape[0]) + + def on_validation_epoch_end(self) -> None: + if not self._val_preds: + return + probs = torch.tensor(self._val_preds) + labels = torch.tensor(self._val_labels) + preds = (probs > 0.5).float() + tp = ((preds == 1) & (labels == 1)).sum().float() + fp = ((preds == 1) & (labels == 0)).sum().float() + fn = ((preds == 0) & (labels == 1)).sum().float() + tn = ((preds == 0) & (labels == 0)).sum().float() + acc = (tp + tn) / (tp + tn + fp + fn).clamp(min=1) + prec = tp / (tp + fp).clamp(min=1) + rec = tp / (tp + fn).clamp(min=1) + f1 = 2 * prec * rec / (prec + rec).clamp(min=1e-8) + self.log("val/accuracy", acc, prog_bar=True) + self.log("val/precision", prec) + self.log("val/recall", rec) + self.log("val/f1", f1, prog_bar=True) + self._val_preds.clear() + self._val_labels.clear() + + def _trainable_non_backbone_params(self) -> list[torch.nn.Parameter]: + backbone_param_ids = { + id(p) for p in self.model.global_branch.backbone.parameters() + } + return [ + p + for p in self.model.parameters() + if p.requires_grad and id(p) not in backbone_param_ids + ] + + def configure_optimizers(self): + non_backbone = self._trainable_non_backbone_params() + if not self.finetune: + optimizer = torch.optim.AdamW( + non_backbone, + lr=self.learning_rate, + weight_decay=self.weight_decay, + ) + else: + if self.backbone_lr is None: + raise ValueError("backbone_lr must be set when finetune=True") + backbone_params = [ + p + for p in self.model.global_branch.backbone.parameters() + if p.requires_grad + ] + optimizer = torch.optim.AdamW( + [ + { + "params": non_backbone, + "lr": self.learning_rate, + "weight_decay": self.weight_decay, + }, + { + "params": backbone_params, + "lr": self.backbone_lr, + "weight_decay": self.weight_decay, + }, + ] + ) + + if not self.use_cosine_warmup: + return optimizer + + total_steps = int(self.trainer.estimated_stepping_batches) + warmup_steps = max(1, int(total_steps * self.warmup_frac)) + + def lr_lambda(step: int) -> float: + if step < warmup_steps: + return step / warmup_steps + progress = (step - warmup_steps) / max(1, total_steps - warmup_steps) + return 0.5 * (1.0 + math.cos(math.pi * progress)) + + scheduler = torch.optim.lr_scheduler.LambdaLR(optimizer, lr_lambda) + return { + "optimizer": optimizer, + "lr_scheduler": {"scheduler": scheduler, "interval": "step"}, + } diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/local_branch.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/local_branch.py new file mode 100644 index 00000000..35c4958b --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/local_branch.py @@ -0,0 +1,539 @@ +"""Local branch: spatio-temporal tube extraction + per-tube video transformer. + +A 16-frame sequence of ``(3, H, W)`` patches is decomposed into a grid of +``grid_size x grid_size`` spatial cells of side ``cell_size``, then sliced +along time into overlapping windows of length ``tube_length`` with stride +``temporal_stride``. Each resulting ``(3, tube_length, cell_size, cell_size)`` +tube is embedded into a single vector by a small video transformer +(tubelet patch embed -> learnable [CLS] + pos embed -> self-attention). +""" + +from __future__ import annotations + +import torch +import torch.nn.functional as F +from torch import Tensor, nn +from torchvision.models.video import R3D_18_Weights, r3d_18 + +_KINETICS_MEAN = (0.43216, 0.394666, 0.37645) +_KINETICS_STD = (0.22803, 0.22145, 0.216989) +_IMAGENET_MEAN = (0.485, 0.456, 0.406) +_IMAGENET_STD = (0.229, 0.224, 0.225) + + +def n_temporal_windows(num_frames: int, tube_length: int, temporal_stride: int) -> int: + """Number of fully-contained sliding windows over ``num_frames``.""" + if num_frames < tube_length: + return 0 + return (num_frames - tube_length) // temporal_stride + 1 + + +def extract_tubes( + patches: Tensor, + grid_size: int, + cell_size: int, + tube_length: int, + temporal_stride: int, +) -> Tensor: + """Decompose ``(B, T, 3, H, W)`` patches into spatio-temporal tubes. + + Args: + patches: ``(B, T, 3, H, W)`` RGB tensors. Requires + ``H == W == grid_size * cell_size``. + grid_size: Number of spatial cells per axis (e.g. 4). + cell_size: Side length of each spatial cell in pixels. + tube_length: Number of frames per temporal window. + temporal_stride: Frame stride between consecutive windows. + + Returns: + ``(B, N_tubes, 3, tube_length, cell_size, cell_size)`` where + ``N_tubes = n_windows * grid_size**2``. Tubes are laid out as + ``[(window_0, cell_(0,0)), (window_0, cell_(0,1)), ...]``. + """ + b, t, c, h, w = patches.shape + expected = grid_size * cell_size + if h != expected or w != expected: + raise ValueError( + f"extract_tubes expects H = W = grid_size * cell_size = {expected}, " + f"got H={h}, W={w}" + ) + n_windows = n_temporal_windows(t, tube_length, temporal_stride) + if n_windows == 0: + raise ValueError( + f"extract_tubes: T={t} is shorter than tube_length={tube_length}" + ) + + # Temporal sliding windows: (B, n_windows, 3, H, W, tube_length) + temporal = patches.unfold(1, tube_length, temporal_stride) + # Move the unfold-appended tube_length axis next to the channel dim: + # -> (B, n_windows, 3, tube_length, H, W) + temporal = temporal.permute(0, 1, 2, 5, 3, 4).contiguous() + + # Spatial unfold along H and W: + # -> (B, n_windows, 3, tube_length, grid_size, grid_size, cell_size, cell_size) + spatial = temporal.unfold(4, cell_size, cell_size).unfold(5, cell_size, cell_size) + + # Collapse spatial grid -> tube axis. Reorder so each (window, cell) is one tube: + # (B, n_windows, grid_size, grid_size, 3, tube_length, cell_size, cell_size) + spatial = spatial.permute(0, 1, 4, 5, 2, 3, 6, 7).contiguous() + n_tubes = n_windows * grid_size * grid_size + return spatial.view(b, n_tubes, c, tube_length, cell_size, cell_size) + + +def tube_validity_mask( + mask: Tensor, + grid_size: int, + tube_length: int, + temporal_stride: int, +) -> Tensor: + """Derive ``(B, N_tubes)`` boolean validity mask from a ``(B, T)`` frame mask. + + A tube is valid iff at least one of its constituent frames is real. + Cells inside the same temporal window share validity (purely temporal + derivation). + """ + b, t = mask.shape + n_windows = n_temporal_windows(t, tube_length, temporal_stride) + # (B, n_windows, tube_length) + win_mask = mask.unfold(1, tube_length, temporal_stride) + per_window = win_mask.any(dim=-1) # (B, n_windows) + # Broadcast to all spatial cells in the window: (B, n_windows, grid_size**2) + per_tube = per_window.unsqueeze(-1).expand(b, n_windows, grid_size * grid_size) + return per_tube.reshape(b, n_windows * grid_size * grid_size).contiguous() + + +class _SelfAttnBlock(nn.Module): + """Pre-norm self-attention + FFN block (batch_first).""" + + def __init__( + self, + embed_dim: int, + num_heads: int, + ffn_dim: int, + dropout: float, + ) -> None: + super().__init__() + self.norm1 = nn.LayerNorm(embed_dim) + self.attn = nn.MultiheadAttention( + embed_dim=embed_dim, + num_heads=num_heads, + dropout=dropout, + batch_first=True, + ) + self.norm2 = nn.LayerNorm(embed_dim) + self.ffn = nn.Sequential( + nn.Linear(embed_dim, ffn_dim), + nn.GELU(), + nn.Dropout(dropout), + nn.Linear(ffn_dim, embed_dim), + nn.Dropout(dropout), + ) + + def forward(self, x: Tensor) -> Tensor: + h = self.norm1(x) + attn_out, _ = self.attn(h, h, h, need_weights=False) + x = x + attn_out + x = x + self.ffn(self.norm2(x)) + return x + + +class LocalTubeEncoder(nn.Module): + """Encode each ``(3, T_t, h, w)`` tube into one embedding via a video transformer. + + Architecture per tube: + - Tubelet patch embed: ``Conv3d`` with stride matching its kernel, + producing a grid of spatio-temporal tokens. + - Prepend a learnable ``[CLS]`` token; add learned positional embeddings. + - ``num_layers`` self-attention blocks. + - Return the final ``[CLS]`` state as the tube embedding. + """ + + def __init__( + self, + tube_length: int, + cell_size: int, + t_kernel: int, + h_patch: int, + w_patch: int, + embed_dim: int, + num_layers: int, + num_heads: int, + ffn_dim: int, + dropout: float, + ) -> None: + super().__init__() + if tube_length % t_kernel != 0: + raise ValueError( + f"tube_length ({tube_length}) must be divisible " + f"by t_kernel ({t_kernel})" + ) + if cell_size % h_patch != 0 or cell_size % w_patch != 0: + raise ValueError( + f"cell_size ({cell_size}) must be divisible by h_patch ({h_patch}) " + f"and w_patch ({w_patch})" + ) + self.tubelet_embed = nn.Conv3d( + in_channels=3, + out_channels=embed_dim, + kernel_size=(t_kernel, h_patch, w_patch), + stride=(t_kernel, h_patch, w_patch), + ) + n_t = tube_length // t_kernel + n_h = cell_size // h_patch + n_w = cell_size // w_patch + self.n_tokens = n_t * n_h * n_w + self.cls_token = nn.Parameter(torch.zeros(1, 1, embed_dim)) + nn.init.trunc_normal_(self.cls_token, std=0.02) + self.pos_embed = nn.Parameter(torch.zeros(1, self.n_tokens + 1, embed_dim)) + nn.init.trunc_normal_(self.pos_embed, std=0.02) + self.blocks = nn.ModuleList( + [ + _SelfAttnBlock(embed_dim, num_heads, ffn_dim, dropout) + for _ in range(num_layers) + ] + ) + self.norm = nn.LayerNorm(embed_dim) + self.embed_dim = embed_dim + + def forward(self, tubes: Tensor) -> Tensor: + """``tubes: (B, N_tubes, 3, T_t, h, w) -> (B, N_tubes, embed_dim)``.""" + b, n, c, t, h, w = tubes.shape + x = tubes.reshape(b * n, c, t, h, w) + x = self.tubelet_embed(x) # (B*N, D, n_t, n_h, n_w) + x = x.flatten(2).transpose(1, 2) # (B*N, n_tokens, D) + cls = self.cls_token.expand(x.shape[0], 1, -1) + x = torch.cat([cls, x], dim=1) + x = x + self.pos_embed + for block in self.blocks: + x = block(x) + cls_out = self.norm(x[:, 0, :]) + return cls_out.reshape(b, n, self.embed_dim) + + +class _TubeEncoderBase(nn.Module): + """Flattens the ``(B, N, …)`` tube axis, calls ``_encode``, reshapes back.""" + + embed_dim: int + + def forward(self, tubes: Tensor) -> Tensor: + b, n, c, t, h, w = tubes.shape + feat = self._encode(tubes.reshape(b * n, c, t, h, w)) # (B*N, D) + return feat.reshape(b, n, self.embed_dim) + + def _encode(self, x: Tensor) -> Tensor: # (B', 3, T, h, w) -> (B', D) + raise NotImplementedError + + +class Resnet3DTubeEncoder(_TubeEncoderBase): + """Kinetics-400 pretrained r3d_18 applied to each tube.""" + + def __init__( + self, embed_dim: int, pretrained: bool = True, clip_spatial_size: int = 112 + ) -> None: + super().__init__() + self.embed_dim = embed_dim + self.clip_spatial_size = clip_spatial_size + self.backbone = r3d_18( + weights=R3D_18_Weights.KINETICS400_V1 if pretrained else None + ) + feat_dim = self.backbone.fc.in_features + self.backbone.fc = nn.Identity() + self.proj: nn.Module = ( + nn.Identity() if embed_dim == feat_dim else nn.Linear(feat_dim, embed_dim) + ) + im_mean, im_std = torch.tensor(_IMAGENET_MEAN), torch.tensor(_IMAGENET_STD) + ki_mean, ki_std = torch.tensor(_KINETICS_MEAN), torch.tensor(_KINETICS_STD) + self.register_buffer( + "_scale", (im_std / ki_std).view(1, 3, 1, 1, 1), persistent=False + ) + self.register_buffer( + "_bias", + ((im_mean - ki_mean) / ki_std).view(1, 3, 1, 1, 1), + persistent=False, + ) + + def _encode(self, x: Tensor) -> Tensor: + x = x * self._scale + self._bias # ImageNet -> Kinetics + s = self.clip_spatial_size + if x.shape[-1] != s or x.shape[-2] != s: + x = F.interpolate( + x, size=(x.shape[2], s, s), mode="trilinear", align_corners=False + ) + return self.proj(self.backbone(x)) + + +class ViViTTubeEncoder(_TubeEncoderBase): + """ViViT-style tubelet embedding + factorised spatial-then-temporal attention.""" + + def __init__( + self, + tube_length: int, + cell_size: int, + t_kernel: int, + h_patch: int, + w_patch: int, + embed_dim: int, + num_layers: int, + num_heads: int, + ffn_dim: int, + dropout: float, + ) -> None: + super().__init__() + self.embed_dim = embed_dim + self.tubelet = nn.Conv3d( + 3, + embed_dim, + kernel_size=(t_kernel, h_patch, w_patch), + stride=(t_kernel, h_patch, w_patch), + ) + n_t = tube_length // t_kernel + n_s = (cell_size // h_patch) * (cell_size // w_patch) + self.spatial_pos = nn.Parameter(torch.zeros(1, 1, n_s, embed_dim)) + self.temporal_pos = nn.Parameter(torch.zeros(1, n_t, 1, embed_dim)) + nn.init.trunc_normal_(self.spatial_pos, std=0.02) + nn.init.trunc_normal_(self.temporal_pos, std=0.02) + self.spatial_blocks = nn.ModuleList( + [ + _SelfAttnBlock(embed_dim, num_heads, ffn_dim, dropout) + for _ in range(num_layers) + ] + ) + self.temporal_blocks = nn.ModuleList( + [ + _SelfAttnBlock(embed_dim, num_heads, ffn_dim, dropout) + for _ in range(num_layers) + ] + ) + self.norm = nn.LayerNorm(embed_dim) + + def _encode(self, x: Tensor) -> Tensor: + z = self.tubelet(x) # (B', D, T', Hp, Wp) + b2, d, tp, hp, wp = z.shape + z = z.flatten(3).permute(0, 2, 3, 1) # (B', T', S, D) + z = z + self.spatial_pos + self.temporal_pos + s = hp * wp + for sblk, tblk in zip(self.spatial_blocks, self.temporal_blocks, strict=True): + z = sblk(z.reshape(b2 * tp, s, d)).reshape(b2, tp, s, d) + z = ( + tblk(z.permute(0, 2, 1, 3).reshape(b2 * s, tp, d)) + .reshape(b2, s, tp, d) + .permute(0, 2, 1, 3) + ) + return self.norm(z.reshape(b2, tp * s, d).mean(dim=1)) + + +class _ConvLSTMCell(nn.Module): + def __init__(self, in_ch: int, hid_ch: int, kernel: int = 3) -> None: + super().__init__() + self.hid_ch = hid_ch + self.conv = nn.Conv2d(in_ch + hid_ch, 4 * hid_ch, kernel, padding=kernel // 2) + + def forward(self, x: Tensor, h: Tensor, c: Tensor) -> tuple[Tensor, Tensor]: + i, f, o, g = self.conv(torch.cat([x, h], dim=1)).chunk(4, dim=1) + c = torch.sigmoid(f) * c + torch.sigmoid(i) * torch.tanh(g) + h = torch.sigmoid(o) * torch.tanh(c) + return h, c + + +class ConvLSTMTubeEncoder(_TubeEncoderBase): + """Per-frame 2D CNN stem + ConvLSTM recurrence over the tube's frames.""" + + def __init__( + self, embed_dim: int, base_channels: int = 64, hidden_channels: int = 128 + ) -> None: + super().__init__() + self.embed_dim = embed_dim + self.hidden_channels = hidden_channels + c = base_channels + self.stem = nn.Sequential( + nn.Conv2d(3, c, 3, stride=2, padding=1), + nn.BatchNorm2d(c), + nn.GELU(), + nn.Conv2d(c, c * 2, 3, stride=2, padding=1), + nn.BatchNorm2d(c * 2), + nn.GELU(), + nn.Conv2d(c * 2, hidden_channels, 3, stride=2, padding=1), + nn.BatchNorm2d(hidden_channels), + nn.GELU(), + ) + self.cell = _ConvLSTMCell(hidden_channels, hidden_channels) + self.proj = nn.Linear(hidden_channels, embed_dim) + + def _encode(self, x: Tensor) -> Tensor: + b2, c, t, h, w = x.shape + feat = self.stem(x.transpose(1, 2).reshape(b2 * t, c, h, w)) + _, cc, hh, ww = feat.shape + feat = feat.reshape(b2, t, cc, hh, ww) + h_t = feat.new_zeros(b2, self.hidden_channels, hh, ww) + c_t = feat.new_zeros(b2, self.hidden_channels, hh, ww) + for ti in range(t): + h_t, c_t = self.cell(feat[:, ti], h_t, c_t) + return self.proj(F.adaptive_avg_pool2d(h_t, 1).flatten(1)) + + +def _temporal_shift(x: Tensor, n_frames: int, fold_div: int = 4) -> Tensor: + """Temporal shift on ``(B'*T, C, H, W)`` (TSM): part of channels shift in time.""" + bt, c, h, w = x.shape + b = bt // n_frames + x = x.view(b, n_frames, c, h, w) + fold = c // fold_div + out = torch.zeros_like(x) + out[:, :-1, :fold] = x[:, 1:, :fold] # shift toward future + out[:, 1:, fold : 2 * fold] = x[:, :-1, fold : 2 * fold] # shift toward past + out[:, :, 2 * fold :] = x[:, :, 2 * fold :] # unchanged + return out.view(bt, c, h, w) + + +class _TSMBlock(nn.Module): + def __init__(self, in_ch: int, out_ch: int, n_frames: int) -> None: + super().__init__() + self.n_frames = n_frames + self.conv = nn.Sequential( + nn.Conv2d(in_ch, out_ch, 3, stride=2, padding=1), + nn.BatchNorm2d(out_ch), + nn.GELU(), + ) + + def forward(self, x: Tensor) -> Tensor: + return self.conv(_temporal_shift(x, self.n_frames)) + + +class TSMTubeEncoder(_TubeEncoderBase): + """Temporal Shift Module 2D CNN + temporal mean pooling.""" + + def __init__( + self, tube_length: int, embed_dim: int, base_channels: int = 64 + ) -> None: + super().__init__() + self.embed_dim = embed_dim + self.tube_length = tube_length + c = base_channels + self.blocks = nn.Sequential( + _TSMBlock(3, c, tube_length), + _TSMBlock(c, c * 2, tube_length), + _TSMBlock(c * 2, c * 4, tube_length), + ) + self.proj = nn.Linear(c * 4, embed_dim) + + def _encode(self, x: Tensor) -> Tensor: + b2, c, t, h, w = x.shape + feat = self.blocks(x.transpose(1, 2).reshape(b2 * t, c, h, w)) + pooled = ( + F.adaptive_avg_pool2d(feat, 1).flatten(1).reshape(b2, t, -1).mean(dim=1) + ) + return self.proj(pooled) + + +def build_tube_encoder( + kind: str, + *, + tube_length: int, + cell_size: int, + t_kernel: int, + h_patch: int, + w_patch: int, + embed_dim: int, + num_layers: int, + num_heads: int, + ffn_dim: int, + dropout: float, + base_channels: int = 64, + resnet_pretrained: bool = True, +) -> nn.Module: + """Construct a per-tube encoder by name (see SPATIAL_COMPARISON.md).""" + if kind == "tubelet_transformer": + return LocalTubeEncoder( + tube_length=tube_length, + cell_size=cell_size, + t_kernel=t_kernel, + h_patch=h_patch, + w_patch=w_patch, + embed_dim=embed_dim, + num_layers=num_layers, + num_heads=num_heads, + ffn_dim=ffn_dim, + dropout=dropout, + ) + if kind == "resnet3d": + return Resnet3DTubeEncoder( + embed_dim=embed_dim, + pretrained=resnet_pretrained, + clip_spatial_size=cell_size, + ) + if kind == "vivit": + return ViViTTubeEncoder( + tube_length=tube_length, + cell_size=cell_size, + t_kernel=t_kernel, + h_patch=h_patch, + w_patch=w_patch, + embed_dim=embed_dim, + num_layers=num_layers, + num_heads=num_heads, + ffn_dim=ffn_dim, + dropout=dropout, + ) + if kind == "convlstm": + return ConvLSTMTubeEncoder(embed_dim=embed_dim, base_channels=base_channels) + if kind == "tsm": + return TSMTubeEncoder( + tube_length=tube_length, embed_dim=embed_dim, base_channels=base_channels + ) + raise ValueError(f"unknown tube encoder kind {kind!r}") + + +class LocalBranch(nn.Module): + """Full local branch: tube extraction + per-tube encoder + validity mask.""" + + def __init__( + self, + grid_size: int, + cell_size: int, + tube_length: int, + temporal_stride: int, + t_kernel: int, + h_patch: int, + w_patch: int, + embed_dim: int, + num_layers: int, + num_heads: int, + ffn_dim: int, + dropout: float, + encoder_kind: str = "tubelet_transformer", + ) -> None: + super().__init__() + self.grid_size = grid_size + self.cell_size = cell_size + self.tube_length = tube_length + self.temporal_stride = temporal_stride + self.encoder = build_tube_encoder( + encoder_kind, + tube_length=tube_length, + cell_size=cell_size, + t_kernel=t_kernel, + h_patch=h_patch, + w_patch=w_patch, + embed_dim=embed_dim, + num_layers=num_layers, + num_heads=num_heads, + ffn_dim=ffn_dim, + dropout=dropout, + ) + self.embed_dim = embed_dim + + def forward(self, patches: Tensor, mask: Tensor) -> tuple[Tensor, Tensor]: + tubes = extract_tubes( + patches, + grid_size=self.grid_size, + cell_size=self.cell_size, + tube_length=self.tube_length, + temporal_stride=self.temporal_stride, + ) + tube_feats = self.encoder(tubes) + tube_mask = tube_validity_mask( + mask, + grid_size=self.grid_size, + tube_length=self.tube_length, + temporal_stride=self.temporal_stride, + ) + return tube_feats, tube_mask diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/model.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/model.py new file mode 100644 index 00000000..019eaf2c --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/model.py @@ -0,0 +1,269 @@ +"""TemporalModel implementation for tube-multiscale-fusion. + +Wires the YOLO companion + tube building + patch cropping + the trained +two-branch classifier into the pyrocore :class:`TemporalModel` contract, so +the model is comparable on the shared leaderboard alongside the other +temporal models. + +The detect -> build_tubes -> filter/interpolate -> crop -> score -> trigger +pipeline is reused verbatim from ``bbox_tube_temporal`` (the shared +``bbox-tube-temporal-core`` library); only the classifier differs: here it is +the two-branch :class:`LitTubeMultiscaleClassifier` instead of the +single-branch ``TemporalSmokeClassifier``. Both expose the same callable +contract ``(patches[N, T, 3, H, W], mask[N, T]) -> logits[N]``. +""" + +from __future__ import annotations + +from pathlib import Path +from typing import Any, Self + +import torch +from bbox_tube_temporal.inference import ( + crop_tube_patches, + filter_and_interpolate_tubes, + find_first_crossing_trigger, + pad_frames_symmetrically, + pad_frames_uniform, + run_yolo_on_frames, + score_tubes, +) +from bbox_tube_temporal.tubes import build_tubes +from pyrocore import Frame, TemporalModel, TemporalModelOutput + +from .package import ModelPackage, load_model_package + +_PAD_STRATEGIES = { + "symmetric": pad_frames_symmetrically, + "uniform": pad_frames_uniform, +} + + +def _select_device(device: str | torch.device | None) -> torch.device: + """Resolve the requested device, auto-picking the best available when None. + + Preference order: CUDA > MPS (Apple Silicon) > CPU. + """ + if device is not None: + return torch.device(device) + if torch.cuda.is_available(): + return torch.device("cuda") + if torch.backends.mps.is_available(): + return torch.device("mps") + return torch.device("cpu") + + +class TubeMultiscaleFusionModel(TemporalModel): + """YOLO companion + two-branch tube/global classifier. + + Mirrors :class:`bbox_tube_temporal.model.BboxTubeTemporalModel`; see that + module and ``docs/specs/2026-04-15-temporal-model-protocol-design.md`` for + the full pipeline description. + """ + + def __init__( + self, + *, + yolo_model: Any, + classifier: Any, + config: dict[str, Any], + device: str | torch.device | None = None, + ) -> None: + self._yolo = yolo_model + self._device = _select_device(device) + self._classifier = classifier.to(self._device).eval() + self._cfg = config + + @property + def device(self) -> torch.device: + return self._device + + @classmethod + def from_package( + cls, + package_path: Path, + *, + device: str | torch.device | None = None, + ) -> Self: + pkg: ModelPackage = load_model_package(package_path) + return cls( + yolo_model=pkg.yolo_model, + classifier=pkg.classifier, + config=pkg.config, + device=device, + ) + + @classmethod + def from_archive( + cls, + archive_path: Path, + *, + device: str | torch.device | None = None, + ) -> Self: + """Alias for :meth:`from_package` (generic name used by eval drivers).""" + return cls.from_package(archive_path, device=device) + + def predict(self, frames: list[Frame]) -> TemporalModelOutput: + infer = self._cfg["infer"] + tubes_cfg = self._cfg["tubes"] + mi = self._cfg["model_input"] + clf_cfg = self._cfg["classifier"] + dec = self._cfg["decision"] + + threshold = float(dec["threshold"]) + max_frames = int(clf_cfg["max_frames"]) + + def _make_details( + *, + num_frames_input: int, + num_truncated: int, + padded_indices: list[int], + num_candidates: int, + kept_tubes: list[dict], + trigger_tube_id: int | None, + ) -> dict: + return { + "preprocessing": { + "num_frames_input": num_frames_input, + "num_truncated": num_truncated, + "padded_frame_indices": padded_indices, + }, + "tubes": { + "num_candidates": num_candidates, + "kept": kept_tubes, + }, + "decision": { + "aggregation": "max_logit", + "threshold": threshold, + "trigger_tube_id": trigger_tube_id, + }, + } + + original_len = len(frames) + if original_len == 0: + return TemporalModelOutput( + is_positive=False, + trigger_frame_index=None, + details=_make_details( + num_frames_input=0, + num_truncated=0, + padded_indices=[], + num_candidates=0, + kept_tubes=[], + trigger_tube_id=None, + ), + ) + + truncated = frames[:max_frames] + n_truncated = original_len - len(truncated) + + padded_indices: list[int] = [] + pad_min = int(infer.get("pad_to_min_frames", 0)) + if pad_min > 0 and len(truncated) < pad_min: + strategy = infer.get("pad_strategy", "symmetric") + try: + pad_fn = _PAD_STRATEGIES[strategy] + except KeyError as e: + raise ValueError( + f"unknown pad_strategy {strategy!r}; " + f"expected one of {sorted(_PAD_STRATEGIES)}" + ) from e + truncated, padded_indices = pad_fn(truncated, min_length=pad_min) + + frame_dets = run_yolo_on_frames( + self._yolo, + truncated, + confidence_threshold=infer["confidence_threshold"], + iou_nms=infer["iou_nms"], + image_size=infer["image_size"], + device=self._device, + ) + + candidate_tubes = build_tubes( + frame_dets, + iou_threshold=tubes_cfg["iou_threshold"], + max_misses=tubes_cfg["max_misses"], + ) + kept = filter_and_interpolate_tubes( + candidate_tubes, + min_tube_length=tubes_cfg["infer_min_tube_length"], + min_detected_entries=tubes_cfg["min_detected_entries"], + interpolate_gaps=tubes_cfg["interpolate_gaps"], + ) + + if not kept: + return TemporalModelOutput( + is_positive=False, + trigger_frame_index=None, + details=_make_details( + num_frames_input=original_len, + num_truncated=n_truncated, + padded_indices=padded_indices, + num_candidates=len(candidate_tubes), + kept_tubes=[], + trigger_tube_id=None, + ), + ) + + patches_per_tube: list[torch.Tensor] = [] + masks_per_tube: list[torch.Tensor] = [] + for t in kept: + p, m = crop_tube_patches( + t, + truncated, + context_factor=mi["context_factor"], + patch_size=mi["patch_size"], + max_frames=max_frames, + normalization_mean=mi["normalization"]["mean"], + normalization_std=mi["normalization"]["std"], + ) + patches_per_tube.append(p.to(self._device)) + masks_per_tube.append(m.to(self._device)) + + logits = score_tubes( + self._classifier, + patches_per_tube=patches_per_tube, + masks_per_tube=masks_per_tube, + ) + + is_positive, trigger, trigger_tube_id, per_tube_first_crossing = ( + find_first_crossing_trigger( + classifier=self._classifier, + tubes=kept, + patches_per_tube=patches_per_tube, + masks_per_tube=masks_per_tube, + full_logits=logits, + aggregation="max_logit", + threshold=threshold, + min_prefix_length=tubes_cfg["infer_min_tube_length"], + ) + ) + + logits_list: list[float] = logits.tolist() + kept_tubes: list[dict] = [] + for tube_idx, tube in enumerate(kept): + first_crossing = per_tube_first_crossing.get(tube.tube_id, {}).get( + "crossing_frame" + ) + kept_tubes.append( + { + "tube_id": tube.tube_id, + "start_frame": tube.start_frame, + "end_frame": tube.end_frame, + "logit": logits_list[tube_idx], + "first_crossing_frame": first_crossing, + } + ) + + return TemporalModelOutput( + is_positive=is_positive, + trigger_frame_index=trigger, + details=_make_details( + num_frames_input=original_len, + num_truncated=n_truncated, + padded_indices=padded_indices, + num_candidates=len(candidate_tubes), + kept_tubes=kept_tubes, + trigger_tube_id=trigger_tube_id, + ), + ) diff --git a/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/package.py b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/package.py new file mode 100644 index 00000000..b8c51b20 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/src/tube_multiscale_fusion/package.py @@ -0,0 +1,186 @@ +"""Model packaging: bundle YOLO weights, classifier checkpoint, and config. + +Mirrors ``bbox_tube_temporal.package`` (the sibling experiment) so the +two-branch model plugs into the same serving / leaderboard path. The archive +is a standard ``.zip`` containing: + +- ``manifest.yaml`` — entry point with format version and file pointers. +- ``yolo_weights.pt`` — ultralytics YOLO checkpoint for the companion detector. +- ``classifier.ckpt`` — Lightning checkpoint for ``LitTubeMultiscaleClassifier``. +- ``config.yaml`` — inference config (infer / tubes / model_input / classifier / + decision). + +Unlike ``bbox_tube_temporal`` this experiment ships only the ``max_logit`` +decision rule, so there is no bundled logistic calibrator. +""" + +from dataclasses import dataclass +from pathlib import Path +from typing import Any + +import yaml + +from .lit_module import LitTubeMultiscaleClassifier + +FORMAT_VERSION = 1 +MANIFEST_FILENAME = "manifest.yaml" +YOLO_WEIGHTS_FILENAME = "yolo_weights.pt" +CLASSIFIER_CKPT_FILENAME = "classifier.ckpt" +CONFIG_FILENAME = "config.yaml" +DEFAULT_EXTRACT_DIR = Path(".cache/tube_multiscale_fusion_model") + + +@dataclass +class ModelPackage: + """A loaded model package: classifier, YOLO model, and full config.""" + + classifier: Any # LitTubeMultiscaleClassifier; Any avoids an import cycle + yolo_model: Any # ultralytics.YOLO; same reason + config: dict[str, Any] + + @property + def infer(self) -> dict[str, Any]: + return self.config["infer"] + + @property + def tubes(self) -> dict[str, Any]: + return self.config["tubes"] + + @property + def model_input(self) -> dict[str, Any]: + return self.config["model_input"] + + @property + def classifier_cfg(self) -> dict[str, Any]: + return self.config["classifier"] + + @property + def decision(self) -> dict[str, Any]: + return self.config["decision"] + + +def build_model_package( + *, + yolo_weights_path: Path, + classifier_ckpt_path: Path, + config: dict[str, Any], + variant: str, + output_path: Path, +) -> Path: + """Bundle YOLO weights + classifier checkpoint + config into a .zip archive. + + Args: + yolo_weights_path: Path to the ultralytics YOLO ``.pt`` file. + classifier_ckpt_path: Path to the Lightning ``.ckpt`` for + ``LitTubeMultiscaleClassifier``. + config: Full package config dict (see module docstring for schema). + variant: Identifier recorded in the manifest (informational). + output_path: Destination ``.zip`` path. + + Returns: + The resolved ``output_path``. + + Raises: + FileNotFoundError: If either input file is missing. + """ + import zipfile # noqa: PLC0415 — keep the heavy stdlib import local to the writer + + if not yolo_weights_path.exists(): + raise FileNotFoundError(f"YOLO weights not found: {yolo_weights_path}") + if not classifier_ckpt_path.exists(): + raise FileNotFoundError( + f"Classifier checkpoint not found: {classifier_ckpt_path}" + ) + + manifest = { + "format_version": FORMAT_VERSION, + "variant": variant, + "yolo_weights": YOLO_WEIGHTS_FILENAME, + "classifier_checkpoint": CLASSIFIER_CKPT_FILENAME, + "config": CONFIG_FILENAME, + } + + output_path.parent.mkdir(parents=True, exist_ok=True) + with zipfile.ZipFile(output_path, "w", compression=zipfile.ZIP_STORED) as zf: + zf.writestr(MANIFEST_FILENAME, yaml.dump(manifest, default_flow_style=False)) + zf.write(yolo_weights_path, YOLO_WEIGHTS_FILENAME) + zf.write(classifier_ckpt_path, CLASSIFIER_CKPT_FILENAME) + zf.writestr(CONFIG_FILENAME, yaml.dump(config, default_flow_style=False)) + return output_path.resolve() + + +def _load_yolo(weights_path: Path) -> Any: + """Thin wrapper around ultralytics.YOLO. + + The ``ultralytics`` import is deliberately inside the function body so + tests can patch ``_load_yolo`` without triggering the heavy import chain + (mirrors ``bbox_tube_temporal.package._load_yolo``). ``ultralytics`` is + pulled in transitively via ``bbox-tube-temporal-core``. + """ + from ultralytics import YOLO # noqa: PLC0415 + + return YOLO(str(weights_path)) + + +def _load_classifier(ckpt_path: Path) -> LitTubeMultiscaleClassifier: + """Load a ``LitTubeMultiscaleClassifier`` from a Lightning checkpoint. + + ``pretrained=False`` is forced so timm does not re-download backbone + weights — the trained weights already live in the checkpoint. + """ + model = LitTubeMultiscaleClassifier.load_from_checkpoint( + str(ckpt_path), + map_location="cpu", + pretrained=False, + ) + model.eval() + return model + + +def load_model_package( + package_path: Path, + extract_dir: Path = DEFAULT_EXTRACT_DIR, +) -> ModelPackage: + """Load a packaged model archive. + + Args: + package_path: Path to a ``.zip`` built by :func:`build_model_package`. + extract_dir: Where to extract YOLO weights and classifier ckpt. + + Raises: + FileNotFoundError: if ``package_path`` does not exist. + KeyError: if the archive is missing expected entries. + ValueError: if ``format_version`` is unsupported. + """ + import zipfile # noqa: PLC0415 + + if not package_path.exists(): + raise FileNotFoundError(f"Archive not found: {package_path}") + + with zipfile.ZipFile(package_path, "r") as zf: + names = zf.namelist() + if MANIFEST_FILENAME not in names: + raise KeyError(f"Archive missing {MANIFEST_FILENAME}") + manifest = yaml.safe_load(zf.read(MANIFEST_FILENAME)) + + version = manifest.get("format_version") + if version != FORMAT_VERSION: + raise ValueError( + f"Unsupported format_version {version} (expected {FORMAT_VERSION})" + ) + + yolo_name = manifest["yolo_weights"] + ckpt_name = manifest["classifier_checkpoint"] + config_name = manifest["config"] + for n in (yolo_name, ckpt_name, config_name): + if n not in names: + raise KeyError(f"Archive missing {n}") + + extract_dir.mkdir(parents=True, exist_ok=True) + zf.extract(yolo_name, extract_dir) + zf.extract(ckpt_name, extract_dir) + config = yaml.safe_load(zf.read(config_name)) + + yolo_model = _load_yolo(extract_dir / yolo_name) + classifier = _load_classifier(extract_dir / ckpt_name) + return ModelPackage(classifier=classifier, yolo_model=yolo_model, config=config) diff --git a/experiments/temporal-models/tube-multiscale-fusion/tests/__init__.py b/experiments/temporal-models/tube-multiscale-fusion/tests/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/experiments/temporal-models/tube-multiscale-fusion/tests/test_classifier.py b/experiments/temporal-models/tube-multiscale-fusion/tests/test_classifier.py new file mode 100644 index 00000000..da10fbb9 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/tests/test_classifier.py @@ -0,0 +1,134 @@ +"""End-to-end tests for TubeMultiscaleClassifier. + +These tests substitute a tiny backbone via monkey-patching when possible to +avoid downloading large DINOv2 weights. The full DINOv2 path lives in +``test_global_branch.py`` behind ``@pytest.mark.slow``. +""" + +from __future__ import annotations + +import pytest +import torch +from torch import Tensor, nn + +from tube_multiscale_fusion import classifier as classifier_mod +from tube_multiscale_fusion.classifier import TubeMultiscaleClassifier + + +class _TinyBackbone(nn.Module): + """Drop-in replacement for TimmBackbone with the same interface.""" + + def __init__( + self, + name: str, + pretrained: bool = True, + finetune: bool = False, + finetune_last_n_blocks: int = 0, + global_pool: str = "token", + img_size: int | None = 224, + ) -> None: + super().__init__() + self.feat_dim = 32 + self.finetune = finetune + self.name = name + self.conv = nn.Conv2d(3, self.feat_dim, kernel_size=img_size or 224) + + def forward(self, x: Tensor) -> Tensor: + return self.conv(x).flatten(2).mean(dim=-1) + + +@pytest.fixture +def tiny_backbone(monkeypatch: pytest.MonkeyPatch) -> None: + """Swap TimmBackbone for a tiny conv-based stand-in for speed.""" + monkeypatch.setattr( + "tube_multiscale_fusion.global_branch.TimmBackbone", _TinyBackbone + ) + + +def _build_classifier() -> TubeMultiscaleClassifier: + return TubeMultiscaleClassifier( + backbone="tiny", + finetune=False, + finetune_last_n_blocks=0, + max_frames=16, + global_aggregator_num_layers=1, + global_aggregator_num_heads=4, + global_aggregator_ffn_dim=64, + global_aggregator_dropout=0.0, + grid_size=4, + cell_size=56, + tube_length=4, + temporal_stride=2, + local_t_kernel=2, + local_h_patch=14, + local_w_patch=14, + local_embed_dim=48, + local_num_layers=1, + local_num_heads=4, + local_ffn_dim=96, + local_dropout=0.0, + d_fusion=64, + fusion_num_layers=1, + fusion_num_heads=4, + fusion_ffn_dim=128, + fusion_dropout=0.0, + head_hidden_dim=32, + head_dropout=0.0, + img_size=224, + pretrained=False, + ) + + +def test_classifier_forward_shape(tiny_backbone: None) -> None: + del tiny_backbone + model = _build_classifier() + patches = torch.randn(2, 16, 3, 224, 224) + mask = torch.ones(2, 16, dtype=torch.bool) + logits = model(patches, mask) + assert logits.shape == (2,) + + +def test_classifier_handles_padding(tiny_backbone: None) -> None: + del tiny_backbone + model = _build_classifier() + patches = torch.randn(1, 16, 3, 224, 224) + mask = torch.zeros(1, 16, dtype=torch.bool) + mask[:, :8] = True + logits = model(patches, mask) + assert logits.shape == (1,) + assert torch.isfinite(logits).all() + + +def test_classifier_gradient_flows_through_both_branches( + tiny_backbone: None, +) -> None: + del tiny_backbone + model = _build_classifier() + patches = torch.randn(1, 16, 3, 224, 224, requires_grad=False) + mask = torch.ones(1, 16, dtype=torch.bool) + target = torch.tensor([1.0]) + logits = model(patches, mask) + loss = torch.nn.functional.binary_cross_entropy_with_logits(logits, target) + loss.backward() + + # Local branch encoder params must have grads. + encoder_grads = [ + p.grad for p in model.local_branch.encoder.parameters() if p.requires_grad + ] + assert encoder_grads and all(g is not None for g in encoder_grads) + + # Fusion params must have grads. + fusion_grads = [p.grad for p in model.fusion.parameters() if p.requires_grad] + assert fusion_grads and all(g is not None for g in fusion_grads) + + # Global aggregator params must have grads. + agg_grads = [ + p.grad for p in model.global_branch.aggregator.parameters() if p.requires_grad + ] + assert agg_grads and all(g is not None for g in agg_grads) + + +def test_classifier_module_referenced(tiny_backbone: None) -> None: + """Sanity: the classifier module is what we expect.""" + del tiny_backbone + assert hasattr(classifier_mod, "TubeMultiscaleClassifier") diff --git a/experiments/temporal-models/tube-multiscale-fusion/tests/test_fusion.py b/experiments/temporal-models/tube-multiscale-fusion/tests/test_fusion.py new file mode 100644 index 00000000..648b98cd --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/tests/test_fusion.py @@ -0,0 +1,68 @@ +"""Unit tests for FusionModule.""" + +from __future__ import annotations + +import torch + +from tube_multiscale_fusion.fusion import FusionModule + + +def _build(d_fusion: int = 32) -> FusionModule: + return FusionModule( + global_dim=64, + local_dim=48, + d_fusion=d_fusion, + num_layers=2, + num_heads=4, + ffn_dim=64, + dropout=0.0, + ) + + +def test_fusion_output_shape() -> None: + fusion = _build() + g = torch.randn(2, 64) + locals_ = torch.randn(2, 7, 48) + mask = torch.ones(2, 7, dtype=torch.bool) + out = fusion(g, locals_, mask) + assert out.shape == (2, 32) + + +def test_fusion_handles_all_masked_row_without_nan() -> None: + fusion = _build() + g = torch.randn(2, 64) + locals_ = torch.randn(2, 7, 48) + mask = torch.ones(2, 7, dtype=torch.bool) + mask[1] = False # second sample has no valid locals. + fusion.eval() + with torch.no_grad(): + out = fusion(g, locals_, mask) + assert torch.isfinite(out).all() + + +def test_fusion_masking_changes_output() -> None: + fusion = _build() + g = torch.randn(1, 64) + locals_ = torch.randn(1, 8, 48) + full = torch.ones(1, 8, dtype=torch.bool) + half = torch.zeros(1, 8, dtype=torch.bool) + half[:, :4] = True + fusion.eval() + with torch.no_grad(): + out_full = fusion(g, locals_, full) + out_half = fusion(g, locals_, half) + assert not torch.allclose(out_full, out_half) + + +def test_fusion_identity_projection_when_dims_match() -> None: + fusion = FusionModule( + global_dim=32, + local_dim=32, + d_fusion=32, + num_layers=1, + num_heads=4, + ffn_dim=64, + dropout=0.0, + ) + assert isinstance(fusion.global_proj, torch.nn.Identity) + assert isinstance(fusion.local_proj, torch.nn.Identity) diff --git a/experiments/temporal-models/tube-multiscale-fusion/tests/test_global_branch.py b/experiments/temporal-models/tube-multiscale-fusion/tests/test_global_branch.py new file mode 100644 index 00000000..e00121a5 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/tests/test_global_branch.py @@ -0,0 +1,106 @@ +"""Unit tests for the global branch: TimmBackbone wrapper + GlobalAggregator.""" + +from __future__ import annotations + +import pytest +import torch + +from tube_multiscale_fusion.global_branch import ( + GlobalAggregator, + GlobalBranch, +) + + +def test_global_aggregator_shape() -> None: + agg = GlobalAggregator( + feat_dim=64, + num_layers=2, + num_heads=4, + ffn_dim=128, + dropout=0.0, + max_frames=16, + ) + feats = torch.randn(2, 16, 64) + mask = torch.ones(2, 16, dtype=torch.bool) + out = agg(feats, mask) + assert out.shape == (2, 64) + + +def test_global_aggregator_masking_changes_output() -> None: + """Masking out frames should change the [CLS] readout.""" + agg = GlobalAggregator( + feat_dim=32, + num_layers=1, + num_heads=4, + ffn_dim=64, + dropout=0.0, + max_frames=8, + ) + feats = torch.randn(1, 8, 32) + full_mask = torch.ones(1, 8, dtype=torch.bool) + partial = torch.zeros(1, 8, dtype=torch.bool) + partial[:, :4] = True + with torch.no_grad(): + out_full = agg(feats, full_mask) + out_partial = agg(feats, partial) + assert not torch.allclose(out_full, out_partial) + + +def test_global_aggregator_rejects_too_many_frames() -> None: + agg = GlobalAggregator( + feat_dim=32, + num_layers=1, + num_heads=4, + ffn_dim=64, + dropout=0.0, + max_frames=8, + ) + feats = torch.randn(1, 16, 32) + mask = torch.ones(1, 16, dtype=torch.bool) + with pytest.raises(ValueError, match="max_frames"): + agg(feats, mask) + + +@pytest.mark.slow +def test_global_branch_with_dinov2_frozen() -> None: + """Smoke test the full branch with the real DINOv2 backbone (downloads weights).""" + branch = GlobalBranch( + backbone="vit_small_patch14_dinov2.lvd142m", + finetune=False, + finetune_last_n_blocks=0, + max_frames=16, + aggregator_num_layers=1, + aggregator_num_heads=6, + aggregator_ffn_dim=384, + aggregator_dropout=0.0, + ) + assert branch.feat_dim == 384 + # All backbone params should be frozen. + for p in branch.backbone.backbone.parameters(): + assert not p.requires_grad + patches = torch.randn(1, 16, 3, 224, 224) + mask = torch.ones(1, 16, dtype=torch.bool) + branch.eval() + with torch.no_grad(): + out = branch(patches, mask) + assert out.shape == (1, 384) + + +@pytest.mark.slow +def test_global_branch_finetune_last_block_unfrozen() -> None: + branch = GlobalBranch( + backbone="vit_small_patch14_dinov2.lvd142m", + finetune=True, + finetune_last_n_blocks=1, + max_frames=16, + aggregator_num_layers=1, + aggregator_num_heads=6, + aggregator_ffn_dim=384, + aggregator_dropout=0.0, + ) + blocks = list(branch.backbone.backbone.blocks) + # Last block trainable, second-to-last block frozen. + assert all(p.requires_grad for p in blocks[-1].parameters()) + assert all(not p.requires_grad for p in blocks[-2].parameters()) + # Aggregator always trainable. + assert all(p.requires_grad for p in branch.aggregator.parameters()) diff --git a/experiments/temporal-models/tube-multiscale-fusion/tests/test_local_branch.py b/experiments/temporal-models/tube-multiscale-fusion/tests/test_local_branch.py new file mode 100644 index 00000000..441c101d --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/tests/test_local_branch.py @@ -0,0 +1,169 @@ +"""Unit tests for the local branch: tube extraction + encoder.""" + +from __future__ import annotations + +import pytest +import torch + +from tube_multiscale_fusion.local_branch import ( + LocalBranch, + LocalTubeEncoder, + extract_tubes, + n_temporal_windows, + tube_validity_mask, +) + + +def test_n_temporal_windows_stride2() -> None: + assert n_temporal_windows(16, 4, 2) == 7 + + +def test_n_temporal_windows_stride4_no_overlap() -> None: + assert n_temporal_windows(16, 4, 4) == 4 + + +def test_extract_tubes_shape_default() -> None: + b, t, c, h, w = 2, 16, 3, 224, 224 + patches = torch.randn(b, t, c, h, w) + tubes = extract_tubes( + patches, grid_size=4, cell_size=56, tube_length=4, temporal_stride=2 + ) + # n_windows=7, n_cells=16 -> 112 tubes + assert tubes.shape == (b, 7 * 16, c, 4, 56, 56) + + +def test_extract_tubes_shape_no_overlap() -> None: + patches = torch.randn(1, 16, 3, 224, 224) + tubes = extract_tubes( + patches, grid_size=4, cell_size=56, tube_length=4, temporal_stride=4 + ) + assert tubes.shape == (1, 4 * 16, 3, 4, 56, 56) + + +def test_extract_tubes_content_first_cell_first_window() -> None: + """Tube (window=0, cell=(0,0)) must equal patches[:, 0:4, :, :56, :56].""" + patches = torch.randn(1, 16, 3, 224, 224) + tubes = extract_tubes( + patches, grid_size=4, cell_size=56, tube_length=4, temporal_stride=2 + ) + expected = patches[:, 0:4, :, :56, :56].permute(0, 2, 1, 3, 4) # (B, C, T, H, W) + # Tube index 0 = window 0, cell (0, 0). + assert torch.allclose(tubes[:, 0], expected) + + +def test_extract_tubes_content_second_window_first_cell() -> None: + """Window 1 with stride=2 covers frames 2..5.""" + patches = torch.randn(1, 16, 3, 224, 224) + tubes = extract_tubes( + patches, grid_size=4, cell_size=56, tube_length=4, temporal_stride=2 + ) + # n_cells_per_window = 16, so window 1 starts at tube index 16. + expected = patches[:, 2:6, :, :56, :56].permute(0, 2, 1, 3, 4) + assert torch.allclose(tubes[:, 16], expected) + + +def test_extract_tubes_rejects_mismatched_resolution() -> None: + patches = torch.randn(1, 16, 3, 224, 224) + with pytest.raises(ValueError, match="grid_size"): + extract_tubes( + patches, grid_size=3, cell_size=56, tube_length=4, temporal_stride=2 + ) + + +def test_tube_validity_mask_all_valid() -> None: + mask = torch.ones(2, 16, dtype=torch.bool) + tube_mask = tube_validity_mask(mask, grid_size=4, tube_length=4, temporal_stride=2) + assert tube_mask.shape == (2, 7 * 16) + assert tube_mask.all() + + +def test_tube_validity_mask_partial_padding() -> None: + """Frames 8..15 padded -> windows covering only padded frames must be invalid.""" + mask = torch.zeros(1, 16, dtype=torch.bool) + mask[:, :8] = True + tube_mask = tube_validity_mask(mask, grid_size=4, tube_length=4, temporal_stride=2) + # Windows: [0:4], [2:6], [4:8], [6:10], [8:12], [10:14], [12:16] + # Valid windows: 0..3 (touch frames < 8); invalid: 4..6 (only padded). + per_window = tube_mask.reshape(1, 7, 16).any(dim=-1) + assert per_window[0].tolist() == [True, True, True, True, False, False, False] + + +def test_tube_validity_mask_zero_valid_frames() -> None: + mask = torch.zeros(1, 16, dtype=torch.bool) + tube_mask = tube_validity_mask(mask, grid_size=4, tube_length=4, temporal_stride=2) + assert tube_mask.shape == (1, 112) + assert not tube_mask.any() + + +def test_local_tube_encoder_shape() -> None: + encoder = LocalTubeEncoder( + tube_length=4, + cell_size=56, + t_kernel=2, + h_patch=14, + w_patch=14, + embed_dim=128, + num_layers=2, + num_heads=4, + ffn_dim=256, + dropout=0.0, + ) + tubes = torch.randn(2, 5, 3, 4, 56, 56) + out = encoder(tubes) + assert out.shape == (2, 5, 128) + + +def test_local_tube_encoder_token_count() -> None: + """Tubelet conv 2x14x14 over 4x56x56 -> 2 * 4 * 4 = 32 tokens (+1 CLS).""" + encoder = LocalTubeEncoder( + tube_length=4, + cell_size=56, + t_kernel=2, + h_patch=14, + w_patch=14, + embed_dim=64, + num_layers=1, + num_heads=4, + ffn_dim=128, + dropout=0.0, + ) + assert encoder.n_tokens == 32 + + +def test_local_branch_end_to_end_shape_and_mask() -> None: + branch = LocalBranch( + grid_size=4, + cell_size=56, + tube_length=4, + temporal_stride=2, + t_kernel=2, + h_patch=14, + w_patch=14, + embed_dim=64, + num_layers=1, + num_heads=4, + ffn_dim=128, + dropout=0.0, + ) + patches = torch.randn(2, 16, 3, 224, 224) + mask = torch.ones(2, 16, dtype=torch.bool) + tube_feats, tube_mask = branch(patches, mask) + assert tube_feats.shape == (2, 112, 64) + assert tube_mask.shape == (2, 112) + assert tube_mask.all() + + +def test_local_branch_rejects_invalid_tube_length() -> None: + with pytest.raises(ValueError, match="tube_length"): + LocalTubeEncoder( + tube_length=4, + cell_size=56, + t_kernel=3, # 4 % 3 != 0 + h_patch=14, + w_patch=14, + embed_dim=64, + num_layers=1, + num_heads=4, + ffn_dim=128, + dropout=0.0, + ) diff --git a/experiments/temporal-models/tube-multiscale-fusion/tests/test_model.py b/experiments/temporal-models/tube-multiscale-fusion/tests/test_model.py new file mode 100644 index 00000000..f9ee49f7 --- /dev/null +++ b/experiments/temporal-models/tube-multiscale-fusion/tests/test_model.py @@ -0,0 +1,170 @@ +"""Tests for TubeMultiscaleFusionModel.predict(). + +The detect -> tube -> crop -> score -> trigger pipeline is exercised with a +mocked YOLO and a stub classifier that returns a fixed logit, so the wiring is +verified deterministically without weights. The real two-branch classifier is +covered by ``test_classifier.py``; the lib stages by the bbox-tube-temporal +suite. +""" + +from pathlib import Path +from unittest.mock import MagicMock + +import numpy as np +import pytest +import torch +from PIL import Image +from pyrocore.types import Frame +from torch import Tensor, nn + +from tube_multiscale_fusion.model import TubeMultiscaleFusionModel + +TEST_CONFIG: dict = { + "infer": { + "confidence_threshold": 0.01, + "iou_nms": 0.2, + "image_size": 64, + "pad_to_min_frames": 0, + "pad_strategy": "symmetric", + }, + "tubes": { + "iou_threshold": 0.2, + "max_misses": 2, + "min_tube_length": 4, + "infer_min_tube_length": 2, + "min_detected_entries": 2, + "interpolate_gaps": True, + }, + "model_input": { + "context_factor": 1.5, + "patch_size": 8, + "normalization": { + "mean": [0.485, 0.456, 0.406], + "std": [0.229, 0.224, 0.225], + }, + }, + "classifier": {"max_frames": 6}, + "decision": {"aggregation": "max_logit", "threshold": 0.0}, +} + + +class _StubClassifier(nn.Module): + """Returns a constant logit per tube, regardless of input.""" + + def __init__(self, logit: float) -> None: + super().__init__() + self._logit = logit + + def forward(self, patches: Tensor, mask: Tensor) -> Tensor: # noqa: ARG002 + return torch.full((patches.shape[0],), self._logit, dtype=torch.float32) + + +def _fake_yolo_factory( + per_frame_xywhn: list[list[tuple[float, float, float, float, float]]], +): + """Return a mock YOLO whose ``.predict`` yields fixed detections per frame.""" + + def fake_predict(paths: list[str], **_kwargs): + assert len(paths) == len(per_frame_xywhn) + results = [] + for boxes in per_frame_xywhn: + r = MagicMock() + r.boxes = MagicMock() + if not boxes: + r.boxes.__len__ = lambda self: 0 + r.boxes.xywhn = torch.zeros(0, 4) + r.boxes.conf = torch.zeros(0) + r.boxes.cls = torch.zeros(0) + else: + n = len(boxes) + r.boxes.__len__ = lambda self, n=n: n + r.boxes.xywhn = torch.tensor( + [[c, cy, w, h] for (c, cy, w, h, _) in boxes] + ) + r.boxes.conf = torch.tensor([conf for (_, _, _, _, conf) in boxes]) + r.boxes.cls = torch.zeros(n) + results.append(r) + return results + + m = MagicMock() + m.predict.side_effect = fake_predict + return m + + +@pytest.fixture() +def red_frames(tmp_path: Path) -> list[Frame]: + frames = [] + for i in range(6): + arr = np.full((64, 64, 3), fill_value=[180, 30, 30], dtype=np.uint8) + p = tmp_path / f"f_{i:02d}.jpg" + Image.fromarray(arr).save(p, format="JPEG") + frames.append(Frame(frame_id=p.stem, image_path=p, timestamp=None)) + return frames + + +def _model(yolo, logit: float) -> TubeMultiscaleFusionModel: + return TubeMultiscaleFusionModel( + yolo_model=yolo, + classifier=_StubClassifier(logit), + config=TEST_CONFIG, + device="cpu", + ) + + +def test_empty_frames_returns_negative() -> None: + yolo = MagicMock() + out = _model(yolo, logit=10.0).predict(frames=[]) + assert out.is_positive is False + assert out.trigger_frame_index is None + assert out.details["preprocessing"]["num_frames_input"] == 0 + assert out.details["tubes"]["num_candidates"] == 0 + yolo.predict.assert_not_called() + + +def test_zero_detections_means_negative(red_frames: list[Frame]) -> None: + yolo = _fake_yolo_factory([[] for _ in red_frames]) + out = _model(yolo, logit=10.0).predict(frames=red_frames) + assert out.is_positive is False + assert out.details["tubes"]["num_candidates"] == 0 + assert out.details["tubes"]["kept"] == [] + + +def test_short_tube_below_infer_floor_discarded(red_frames: list[Frame]) -> None: + # Only frame 0 has a detection -> tube length 1, below min_detected_entries=2. + per_frame = [[(0.5, 0.5, 0.1, 0.1, 0.9)]] + [[] for _ in red_frames[1:]] + yolo = _fake_yolo_factory(per_frame) + out = _model(yolo, logit=10.0).predict(frames=red_frames) + assert out.is_positive is False + assert out.details["tubes"]["num_candidates"] == 1 + assert out.details["tubes"]["kept"] == [] + + +def test_full_tube_positive_fires_with_trigger(red_frames: list[Frame]) -> None: + per_frame = [[(0.5, 0.5, 0.1, 0.1, 0.9)] for _ in red_frames] + yolo = _fake_yolo_factory(per_frame) + out = _model(yolo, logit=10.0).predict(frames=red_frames) + assert out.is_positive is True + assert out.trigger_frame_index is not None + assert out.details["decision"]["trigger_tube_id"] is not None + assert len(out.details["tubes"]["kept"]) == 1 + # logit 10 >= threshold 0 at the shortest scored prefix (min_prefix_length=2) + assert out.trigger_frame_index == 1 + + +def test_full_tube_negative_when_below_threshold(red_frames: list[Frame]) -> None: + per_frame = [[(0.5, 0.5, 0.1, 0.1, 0.9)] for _ in red_frames] + yolo = _fake_yolo_factory(per_frame) + out = _model(yolo, logit=-10.0).predict(frames=red_frames) + assert out.is_positive is False + assert out.trigger_frame_index is None + assert len(out.details["tubes"]["kept"]) == 1 + + +def test_truncation_to_max_frames(red_frames: list[Frame]) -> None: + # 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