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Release pipeline
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‎.github/release.yml‎

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# CI pipeline for nf-python
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name: nf-python Release
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on:
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push:
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tags:
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- 'v*'
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jobs:
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build-plugin:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up JDK 17
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uses: actions/setup-java@v4
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with:
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distribution: 'temurin'
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java-version: '17'
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- name: Build Nextflow plugin
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run: |
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make buildPlugins
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- name: Archive plugin zip
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uses: actions/upload-artifact@v4
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with:
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name: nf-python-plugin
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path: build/plugins/nf-python-*.zip
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build-pypi:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.9'
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- name: Build Python package
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run: |
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cd py
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pip install build
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python -m build
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- name: Archive Python dist
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uses: actions/upload-artifact@v4
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with:
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name: nf-python-pypi
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path: py/dist/*
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publish-pypi:
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needs: build-pypi
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.9'
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- name: Build Python package
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run: |
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cd py
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pip install build
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python -m build
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- name: Publish to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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password: ${{ secrets.PYPI_API_TOKEN }}
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validate-version:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Extract version from MANIFEST.MF
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id: manifest
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run: |
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version=$(grep '^Plugin-Version:' plugins/nf-python/src/resources/META-INF/MANIFEST.MF | awk '{print $2}')
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echo "version=$version" >> $GITHUB_OUTPUT
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- name: Extract version from pyproject.toml
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id: pyproject
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run: |
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version=$(grep '^version' py/pyproject.toml | head -1 | cut -d '"' -f2)
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echo "version=$version" >> $GITHUB_OUTPUT
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- name: Extract version from git tag
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id: tag
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run: |
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tag_version=${GITHUB_REF##*/}
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tag_version=${tag_version#v}
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echo "version=$tag_version" >> $GITHUB_OUTPUT
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- name: Check versions match
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run: |
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if [ "${{ steps.manifest.outputs.version }}" != "${{ steps.pyproject.outputs.version }}" ]; then
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echo "MANIFEST.MF and pyproject.toml versions do not match!"
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exit 1
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fi
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if [ "${{ steps.manifest.outputs.version }}" != "${{ steps.tag.outputs.version }}" ]; then
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echo "MANIFEST.MF version and git tag do not match!"
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exit 1
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fi
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echo "All versions match: ${{ steps.manifest.outputs.version }}"

‎.github/workflows/plugin-release.yml‎

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# CI pipeline for nf-python
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name: nf-python Release
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on:
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push:
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tags:
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- 'v*'
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jobs:
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validate-version:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Extract version from MANIFEST.MF
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id: manifest
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run: |
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version=$(grep '^Plugin-Version:' plugins/nf-python/src/resources/META-INF/MANIFEST.MF | awk '{print $2}')
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echo "version=$version" >> $GITHUB_OUTPUT
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- name: Extract version from git tag
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id: tag
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run: |
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tag_version=${GITHUB_REF##*/}
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tag_version=${tag_version#v}
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echo "version=$tag_version" >> $GITHUB_OUTPUT
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- name: Check versions match
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run: |
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if [ "${{ steps.manifest.outputs.version }}" != "${{ steps.tag.outputs.version }}" ]; then
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echo "MANIFEST.MF ${{ steps.manifest.outputs.version }} and git tag ${{ steps.tag.outputs.version }} do not match!"
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exit 1
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fi
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echo "All versions match: ${{ steps.manifest.outputs.version }}"
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build-plugin:
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needs: validate-version
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Set up JDK 17
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uses: actions/setup-java@v4
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with:
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distribution: 'temurin'
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java-version: '17'
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- name: Build Nextflow plugin
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run: |
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make buildPlugins
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- name: Archive plugin zip
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uses: actions/upload-artifact@v4
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with:
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name: nf-python-plugin
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path: build/plugins/nf-python-*.zip

‎.github/workflows/pypi-release.yml‎

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# CI pipeline for nf-python
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name: nf-python Release
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on:
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push:
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tags:
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- 'v*'
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jobs:
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validate-version:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Extract version from pyproject.toml
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id: pyproject
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run: |
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version=$(grep '^version' py/pyproject.toml | head -1 | cut -d '"' -f2)
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echo "version=$version" >> $GITHUB_OUTPUT
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- name: Extract version from git tag
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id: tag
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run: |
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tag_version=${GITHUB_REF##*/}
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tag_version=${tag_version#v}
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echo "version=$tag_version" >> $GITHUB_OUTPUT
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- name: Check versions match
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run: |
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if [ "${{ steps.pyproject.outputs.version }}" != "${{ steps.tag.outputs.version }}" ]; then
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echo "pyproject.toml ${{ steps.pyproject.outputs.version }} and git tag ${{ steps.tag.outputs.version }} do not match!"
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exit 1
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fi
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echo "All versions match: ${{ steps.pyproject.outputs.version }}"
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build-pypi:
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needs: validate-version
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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persist-credentials: false
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: "3.x"
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- name: Build Python package
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run: |
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cd py
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pip install build
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python -m build
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- name: Archive Python dist
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uses: actions/upload-artifact@v4
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with:
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name: nf-python-pypi
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path: py/dist/*
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publish-pypi:
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needs: build-pypi
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runs-on: ubuntu-latest
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environment:
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name: pypi-publish
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url: https://pypi.org/project/nf-python-plugin/
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permissions:
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id-token: write # Required for trusted publishing
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.9'
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- name: Build Python package
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run: |
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cd py
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pip install build
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python -m build
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- name: Publish to PyPI (trusted publishing)
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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# No password needed for trusted publishing
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verbose: true

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