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lines changed Original file line number Diff line number Diff line change @@ -8,6 +8,17 @@ Changes affecting specific commands:
88 - New experimental plugin for scoring variants and assess site noisiness from a large number of unaffected
99 parental samples
1010
11+ * bcftools query
12+
13+ - The functions used in -i/-e filtering expressions (such as SUM, MEDIAN, etc) can be
14+ now used in formatting expressions (#2271).
15+ If the VCF contains INFO/AD and FORMAT/AD, try:
16+
17+ bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t [ %sSUM(FMT/AD)]'
18+ bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t [ %SUM(FMT/AD)]'
19+ bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t %SUM(FMT/AD)'
20+ bcftools query test.vcf -f '%CHROM:%POS \t [ %AD] \t %SUM(INFO/AD)'
21+
1122* bcftools +trio-dnm2
1223
1324 - Fix a problem with --strictly-novel option which would neglect the presence of the apparent de novo
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