Fix CD build (#158)

* Use build instead of sdist

* Forgot -m on build command

* Replace deprecated install command

* Bump version

Author: catanzaromj

.github/workflows/python-publish.yml

@@ -26,23 +26,24 @@ jobs:
         run: |
           git clone https://github.com/martinus/robin-hood-hashing ripser/robinhood
           python -m pip install --upgrade pip
+          python -m pip install --upgrade build
           pip install setuptools wheel twine Cython numpy pytest
-          python setup.py install
+          python -m pip install .
       - name: Run tests
         run: pytest .
       - name: Build and publish
         env:
           TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
           TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
         run: |
-          python setup.py sdist
+          python -m build
           twine upload --skip-existing dist/*
 
   deploy-windows-pip:
     strategy:
       fail-fast: false
       matrix:
-        arch: ['x86', 'x64']
+        arch: ["x86", "x64"]
         python-version: ["3.9", "3.10", "3.11", "3.12"]
 
     runs-on: "windows-latest"
@@ -58,14 +59,15 @@ jobs:
         run: |
           git clone https://github.com/martinus/robin-hood-hashing ripser/robinhood
           python -m pip install --upgrade pip
+          python -m pip install --upgrade build
           pip install setuptools wheel twine Cython numpy pytest
-          python setup.py install
+          python -m pip install .
       - name: Run tests
         run: pytest .
       - name: Build and publish
         env:
           TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
           TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
         run: |
-          python setup.py bdist_wheel
+          python -m build
           twine upload --skip-existing dist/*

CHANGELOG.md

@@ -1,80 +1,106 @@
+# 0.6.7
+
+    - Update CD commands for newer build system.
+
 # 0.6.5
+
     - Bugfix for lower star filtrations with edges that come in at exactly 0 (courtesy of Riccardo Ceccaroni)
 
 # 0.6.4
+
     - Add some includes to ripser.cpp for newer Ubuntu/C++ environments
 
 # 0.6.3
+
     - Update numpy header
 
 # 0.6.2
+
     - Prevent simplex assembly in last dimension for improved memory usage (courtesy of Umberto Lupo)
 
 # 0.6.1
+
     - Lazy import plotting dependencies
 
 # 0.6.0
+
     - Update C++ backend to commit 286d369 of [ripser](https://github.com/Ripser/ripser) but keeping same functionalities
     - Add support to robinhood hashmap into the C++ Backend
     - Update CI in order to compile C++ with robinhood enable
     - Enable Enclosing radius when threshold is set to infinity
 
 # 0.5.5
+
     - Updating CI/CD pipeline.
 
 # 0.5.4
+
     - Fixing issue with inconsistent answers from different scipy.sparse formats, courtesy of Umberto Lupo
 
 # 0.5.3
+
     - Adding link to ripser++ GPU version by Simon Zhang
 
 # 0.5.2:
+
     - Cocycle indices now correspond to point cloud indices, even
       when a greedy permutation is in use
 
 # 0.4.1:
+
     - Fixed packing so C++ is MSVC compatible.
 
 # 0.4.0:
+
     - Added license to distributed packages.
 
 # 0.3.2:
+
     - Added support for greedy permutations.
     - Outsourced plotting to persim.
     - Outsourced data construction in examples to tadasets.
     - Revamped documentation.
 
 # 0.3.0:
+
     - Completed JOSS review, thanks @lmcinnes and @arokem!!
     - Documentation details updated.
 
 # 0.2.7:
+
     - Updating home url
 
 # 0.2.6:
+
     - Update license to MIT.
 
 # 0.2.5:
+
     - Docs and notebooks revamp.
     - Support for Windows.
 
 # 0.2.4:
+
     - Interface redesign
 
 # 0.2.3:
+
     - Support for lower star filtrations
     - Notebook on lower star filtrations
 
 # 0.2.1:
+
     - Sparse distance matrix support
     - Two additional notebooks about sparsity
     - Language agnostic bindings support
     - Bug fixes (filtrations with low number of points)
 
 # 0.2.0:
+
     - Bug fixes (int rounding error for small magnitude threshold)
 
 # 0.1.7:
+
     - Generation of cocycles.
     - Handle inf in C code and in plotting.
     - Many new options for plotting diagrams.

ripser/_version.py

@@ -1 +1 @@
-__version__ = "0.6.5"
+__version__ = "0.6.7"