Spring cleaning 🧼 (#252)

juliasilge · web-flow · commit e76e7038ef07 · 2023-03-06T15:42:10.000-07:00
* Rename .r -&gt; .R

* Update GH actions

* Update CoC

* Update license, DESCRIPTION

* Add badges, pak to README

* Update GH actions
diff --git a/.github/CODE_OF_CONDUCT.md b/.github/CODE_OF_CONDUCT.md
@@ -59,7 +59,7 @@ representative at an online or offline event.
 ## Enforcement
 
 Instances of abusive, harassing, or otherwise unacceptable behavior may be
-reported to the community leaders responsible for enforcement at codeofconduct@rstudio.com. 
+reported to the community leaders responsible for enforcement at codeofconduct@posit.co. 
 All complaints will be reviewed and investigated promptly and fairly.
 
 All community leaders are obligated to respect the privacy and security of the
diff --git a/.github/workflows/R-CMD-check-hard.yaml b/.github/workflows/R-CMD-check-hard.yaml
@@ -31,7 +31,7 @@ jobs:
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -22,28 +22,29 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release'}
+          - {os: macos-latest,   r: 'release'}
 
           - {os: windows-latest, r: 'release'}
           # Don't use Windows 3.6 build to avoid igraph always being
           # installed from source and failing
-          # Use 3.6 to trigger usage of RTools35
           # - {os: windows-latest, r: '3.6'}
+          # use 4.1 to check with rtools40's older compiler
+          - {os: windows-latest, r: '4.1'}
 
           - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-latest,   r: 'release'}
           - {os: ubuntu-latest,   r: 'oldrel-1'}
           - {os: ubuntu-latest,   r: 'oldrel-2'}
           - {os: ubuntu-latest,   r: 'oldrel-3'}
-          # Don't use R 3.4 build. survival, mda, TH.data require >=3.5.
+          # Don't use R 3.5: RSpectra, timeDate, glmnet require >=3.6
           # - {os: ubuntu-latest,   r: 'oldrel-4'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -55,7 +56,6 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          pak-version: devel
           extra-packages:
             any::rcmdcheck,
             randomForest=?ignore-before-r=4.1.0,
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -20,7 +20,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -39,7 +39,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@4.1.4
+        uses: JamesIves/github-pages-deploy-action@v4.4.1
         with:
           clean: false
           branch: gh-pages
diff --git a/.github/workflows/pr-commands.yaml b/.github/workflows/pr-commands.yaml
@@ -14,7 +14,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/pr-fetch@v2
         with:
@@ -51,7 +51,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/pr-fetch@v2
         with:
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -15,7 +15,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -27,5 +27,24 @@ jobs:
           needs: coverage
 
       - name: Test coverage
-        run: covr::codecov(quiet = FALSE)
+        run: |
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+          )
         shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v3
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -4,12 +4,12 @@ Version: 0.3.1.9000
 Authors@R: c(
     person("Joyce", "Cahoon", , "joyceyu48@gmail.com", role = "aut",
            comment = c(ORCID = "0000-0001-7217-4702")),
-    person("Davis", "Vaughan", , "davis@rstudio.com", role = "aut"),
-    person("Max", "Kuhn", , "max@rstudio.com", role = "aut"),
+    person("Davis", "Vaughan", , "davis@posit.co", role = "aut"),
+    person("Max", "Kuhn", , "max@posit.co", role = "aut"),
     person("Alex", "Hayes", , "alexpghayes@gmail.com", role = "aut"),
-    person("Julia", "Silge", , "julia.silge@rstudio.com", role = c("cre", "aut"),
+    person("Julia", "Silge", , "julia.silge@posit.co", role = c("cre", "aut"),
            comment = c(ORCID = "0000-0002-3671-836X")),
-    person("RStudio", role = c("cph", "fnd"))
+    person(given = "Posit, PBC", role = c("cph", "fnd"))
   )
 Description: Provides a set of S3 generics to axe components of fitted
     model objects and help reduce the size of model objects saved to disk.
@@ -18,7 +18,7 @@ URL: https://butcher.tidymodels.org/,
     https://github.com/tidymodels/butcher
 BugReports: https://github.com/tidymodels/butcher/issues
 Depends: 
-    R (>= 3.4.0)
+    R (>= 3.5.0)
 Imports: 
     cli (>= 3.3.0),
     lobstr (>= 1.1.2),
@@ -45,8 +45,8 @@ Suggests:
     fs,
     ipred,
     kernlab,
-    klaR,
     kknn,
+    klaR,
     knitr,
     MASS,
     mda,
diff --git a/LICENSE b/LICENSE
@@ -1,2 +1,2 @@
 YEAR: 2019
-COPYRIGHT HOLDER: Joyce Cahoon
+COPYRIGHT HOLDER: butcher authors
diff --git a/LICENSE.md b/LICENSE.md
@@ -1,6 +1,6 @@
 # MIT License
 
-Copyright (c) 2019 Joyce Cahoon
+Copyright (c) 2019 butcher authors
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
diff --git a/R/utilities.R b/R/utilities.R
diff --git a/README.Rmd b/README.Rmd
@@ -16,8 +16,10 @@ knitr::opts_chunk$set(
 # butcher <a href='https://butcher.tidymodels.org/'><img src='man/figures/logo.png' align="right" height="139" /></a>
 
 <!-- badges: start -->
-[![Codecov test coverage](https://codecov.io/gh/tidymodels/butcher/branch/main/graph/badge.svg)](https://app.codecov.io/gh/tidymodels/butcher?branch=main)
 [![R-CMD-check](https://github.com/tidymodels/butcher/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/tidymodels/butcher/actions/workflows/R-CMD-check.yaml)
+[![CRAN status](https://www.r-pkg.org/badges/version/butcher)](https://CRAN.R-project.org/package=butcher)
+[![Codecov test coverage](https://codecov.io/gh/tidymodels/butcher/branch/main/graph/badge.svg)](https://app.codecov.io/gh/tidymodels/butcher?branch=main)
+[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
 <!-- badges: end -->
 
 ## Overview
@@ -40,8 +42,8 @@ install.packages("butcher")
 Or install the development version from [GitHub](https://github.com/):
 
 ```{r, eval = FALSE}
-# install.packages("devtools")
-devtools::install_github("tidymodels/butcher")
+# install.packages("pak")
+pak::pkg_install("tidymodels/butcher")
 ```
 
 ## Butchering 
diff --git a/README.md b/README.md
@@ -5,9 +5,13 @@
 
 <!-- badges: start -->
 
+[![R-CMD-check](https://github.com/tidymodels/butcher/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/tidymodels/butcher/actions/workflows/R-CMD-check.yaml)
+[![CRAN
+status](https://www.r-pkg.org/badges/version/butcher)](https://CRAN.R-project.org/package=butcher)
 [![Codecov test
 coverage](https://codecov.io/gh/tidymodels/butcher/branch/main/graph/badge.svg)](https://app.codecov.io/gh/tidymodels/butcher?branch=main)
-[![R-CMD-check](https://github.com/tidymodels/butcher/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/tidymodels/butcher/actions/workflows/R-CMD-check.yaml)
+[![Lifecycle:
+stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
 <!-- badges: end -->
 
 ## Overview
@@ -36,8 +40,8 @@ install.packages("butcher")
 Or install the development version from [GitHub](https://github.com/):
 
 ``` r
-# install.packages("devtools")
-devtools::install_github("tidymodels/butcher")
+# install.packages("pak")
+pak::pkg_install("tidymodels/butcher")
 ```
 
 ## Butchering

Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`YEAR: 2019`
`2`		`-COPYRIGHT HOLDER: Joyce Cahoon`
	`2`	`+COPYRIGHT HOLDER: butcher authors`