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Merge pull request #1303 from DavisVaughan/rc/1.2.0
RC 1.2.0
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‎DESCRIPTION‎

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Package: tidyr
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Title: Tidy Messy Data
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Version: 1.1.4.9000
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Version: 1.2.0
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Authors@R: c(
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person("Hadley", "Wickham", , "[email protected]", role = c("aut", "cre")),
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person("Maximilian", "Girlich", role = "aut"),

‎NEWS.md‎

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# tidyr (development version)
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# tidyr 1.2.0
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## Pivoting
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‎_pkgdown.yml‎

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news:
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releases:
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- text: "Version 1.2.0"
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href: https://www.tidyverse.org/blog/2022/02/tidyr-1-2-0/
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- text: "Version 1.1.0"
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href: https://www.tidyverse.org/blog/2020/05/tidyr-1.1.0/
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- text: "Version 1.0.0"

‎cran-comments.md‎

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## revdepcheck results
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We checked 1210 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
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We checked 1451 reverse dependencies (1441 from CRAN + 10 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 0 new problems
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* We failed to check 39 packages
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* We saw 7 new problems
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* We failed to check 3 packages
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Issues with CRAN packages are summarised below.
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### New problems
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(This reports the first line of each new failure)
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* covidregionaldata
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checking tests ... ERROR
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checking re-building of vignette outputs ... WARNING
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* emayili
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checking examples ... ERROR
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checking tests ... ERROR
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* simpr
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checking S3 generic/method consistency ... WARNING
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* skater
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checking re-building of vignette outputs ... WARNING
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* sparklyr
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checking S3 generic/method consistency ... WARNING
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* SWMPrExtension
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checking examples ... ERROR
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* xml2relational
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checking examples ... ERROR
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### Failed to check
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* airt (NA)
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* andurinha (NA)
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* biscale (NA)
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* cat2cat (NA)
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* CB2 (NA)
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* comperes (NA)
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* coxed (NA)
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* cpr (NA)
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* datawizard (NA)
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* dexterMST (NA)
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* dimRed (NA)
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* diseq (NA)
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* eechidna (NA)
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* eurostat (NA)
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* explor (NA)
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* fitzRoy (NA)
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* fixerapi (NA)
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* fmriqa (NA)
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* ftExtra (NA)
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* geofi (NA)
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* metagam (NA)
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* OncoBayes2 (NA)
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* PupilPre (NA)
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* rabhit (NA)
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* Radviz (NA)
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* RavenR (NA)
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* raw (NA)
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* Rilostat (NA)
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* RKorAPClient (NA)
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* rmdcev (NA)
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* RtutoR (NA)
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* scoper (NA)
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* SCORPIUS (NA)
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* SimBIID (NA)
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* tigger (NA)
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* tinyarray (NA)
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* vivid (NA)
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* wrswoR (NA)
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* XPolaris (NA)
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* loon.ggplot (NA)
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* PLNmodels (NA)
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* vivid (NA)

‎revdep/README.md‎

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## Failed to check (13)
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|package |version |error |warning |note |
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|:--------------|:-------|:-----|:-------|:----|
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|brendaDb |? | | | |
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|BUSpaRse |? | | | |
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|ceRNAnetsim |? | | | |
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|COMPASS |? | | | |
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|ctDNAtools |? | | | |
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|destiny |? | | | |
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|dynfrail |? | | | |
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|evaluator |? | | | |
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|expstudies |? | | | |
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|loon.ggplot |? | | | |
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|mafs |? | | | |
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|MarketMatching |? | | | |
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|vivid |? | | | |
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|package |version |error |warning |note |
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|:-----------|:-------|:-----|:-------|:----|
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|brendaDb |? | | | |
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|BUSpaRse |? | | | |
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|ceRNAnetsim |? | | | |
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|COMPASS |? | | | |
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|ctDNAtools |? | | | |
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|destiny |? | | | |
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|dynfrail |? | | | |
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|evaluator |? | | | |
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|expstudies |? | | | |
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|loon.ggplot |? | | | |
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|mafs |? | | | |
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|PLNmodels |0.11.5 |1 | | |
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|vivid |? | | | |
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## New problems (11)
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## New problems (7)
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|package |version |error |warning |note |
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|:--------------------------------------------------|:-------|:------|:-------|:----|
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|[covidregionaldata](problems.md#covidregionaldata) |0.9.2 |__+1__ |__+1__ |1 |
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|[crosstable](problems.md#crosstable) |0.3.2 |__+1__ | | |
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|[emayili](problems.md#emayili) |0.7.0 |__+2__ | | |
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|[iotables](problems.md#iotables) |0.4.7 | |__+1__ | |
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|[simpr](problems.md#simpr) |0.2.1 | |__+1__ | |
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|[skater](problems.md#skater) |0.1.0 | |__+1__ | |
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|[sparklyr](problems.md#sparklyr) |1.7.4 | |__+1__ |2 |
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|[SWMPrExtension](problems.md#swmprextension) |2.1.0 |__+1__ | | |
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|[tidygate](problems.md#tidygate) |0.4.8 |__+1__ | | |
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|[Tplyr](problems.md#tplyr) |0.4.3 |__+2__ |__+1__ | |
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|[xml2relational](problems.md#xml2relational) |0.1.0 |__+1__ | | |
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|package |version |error |warning |note |
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|:--------------------------------------------------|:-------|:------|:--------|:----|
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|[covidregionaldata](problems.md#covidregionaldata) |0.9.2 |__+1__ |__+1__ |1 |
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|[emayili](problems.md#emayili) |0.7.0 |__+2__ | | |
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|[simpr](problems.md#simpr) |0.2.1 | |__+1__ | |
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|[skater](problems.md#skater) |0.1.0 | |__+1__ | |
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|[sparklyr](problems.md#sparklyr) |1.7.4 | |1 __+1__ |1 |
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|[SWMPrExtension](problems.md#swmprextension) |2.1.0 |__+1__ | | |
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|[xml2relational](problems.md#xml2relational) |0.1.0 |__+1__ | | |
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‎revdep/cran.md‎

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## revdepcheck results
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We checked 1449 reverse dependencies (1439 from CRAN + 10 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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We checked 1451 reverse dependencies (1441 from CRAN + 10 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 11 new problems
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* We saw 7 new problems
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* We failed to check 3 packages
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Issues with CRAN packages are summarised below.
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checking tests ... ERROR
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checking re-building of vignette outputs ... WARNING
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* crosstable
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checking tests ... ERROR
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* emayili
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checking examples ... ERROR
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checking tests ... ERROR
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* iotables
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checking re-building of vignette outputs ... WARNING
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* simpr
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checking S3 generic/method consistency ... WARNING
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* SWMPrExtension
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checking examples ... ERROR
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* tidygate
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checking examples ... ERROR
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* Tplyr
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checking examples ... ERROR
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checking tests ... ERROR
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checking re-building of vignette outputs ... WARNING
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* xml2relational
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checking examples ... ERROR
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### Failed to check
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* loon.ggplot (NA)
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* MarketMatching (NA)
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* vivid (NA)
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* loon.ggplot (NA)
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* PLNmodels (NA)
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* vivid (NA)

‎revdep/failures.md‎

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* Version: NA
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* GitHub: NA
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* Source code: https://github.com/cran/destiny
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* Number of recursive dependencies: 149
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* Number of recursive dependencies: 122
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Run `cloud_details(, "destiny")` for more info
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* Version: NA
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* GitHub: NA
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* Source code: https://github.com/cran/dynfrail
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* Number of recursive dependencies: 92
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* Number of recursive dependencies: 61
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```
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# MarketMatching
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# PLNmodels
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<details>
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* Version: 1.2.0
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* GitHub: NA
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* Source code: https://github.com/cran/MarketMatching
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* Date/Publication: 2021-01-08 20:10:02 UTC
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* Number of recursive dependencies: 67
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* Version: 0.11.5
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* GitHub: https://github.com/pln-team/PLNmodels
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* Source code: https://github.com/cran/PLNmodels
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* Date/Publication: 2022-01-20 22:42:49 UTC
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* Number of recursive dependencies: 173
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Run `cloud_details(, "MarketMatching")` for more info
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Run `cloud_details(, "PLNmodels")` for more info
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</details>
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## Error before installation
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### Devel
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```
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* using log directory ‘/tmp/workdir/MarketMatching/new/MarketMatching.Rcheck’
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* using R version 4.1.1 (2021-08-10)
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* using platform: x86_64-pc-linux-gnu (64-bit)
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* using session charset: UTF-8
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* using option ‘--no-manual’
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* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
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* checking extension type ... Package
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* this is package ‘MarketMatching’ version ‘1.2.0’
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* checking package namespace information ... OK
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* checking package dependencies ... ERROR
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Packages required but not available: 'CausalImpact', 'bsts', 'Boom'
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## In both
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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manual.
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* DONE
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Status: 1 ERROR
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* checking whether package ‘PLNmodels’ can be installed ... ERROR
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```
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Installation failed.
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See ‘/tmp/workdir/PLNmodels/new/PLNmodels.Rcheck/00install.out’ for details.
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```
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## Installation
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### Devel
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```
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* installing *source* package ‘PLNmodels’ ...
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** package ‘PLNmodels’ successfully unpacked and MD5 sums checked
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** using staged installation
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** libs
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g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
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g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c nlopt_wrapper.cpp -o nlopt_wrapper.o
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g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c optim_diag_cov.cpp -o optim_diag_cov.o
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g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c optim_full_cov.cpp -o optim_full_cov.o
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g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c optim_genet_cov.cpp -o optim_genet_cov.o
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g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c optim_rank_cov.cpp -o optim_rank_cov.o
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...
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** building package indices
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** installing vignettes
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** testing if installed package can be loaded from temporary location
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Error: package or namespace load failed for ‘PLNmodels’ in dyn.load(file, DLLpath = DLLpath, ...):
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unable to load shared object '/tmp/workdir/PLNmodels/new/PLNmodels.Rcheck/00LOCK-PLNmodels/00new/PLNmodels/libs/PLNmodels.so':
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/tmp/workdir/PLNmodels/new/PLNmodels.Rcheck/00LOCK-PLNmodels/00new/PLNmodels/libs/PLNmodels.so: undefined symbol: nlopt_set_min_objective
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Error: loading failed
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Execution halted
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ERROR: loading failed
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* removing ‘/tmp/workdir/PLNmodels/new/PLNmodels.Rcheck/PLNmodels’
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```
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### CRAN
465475
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```
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* using log directory ‘/tmp/workdir/MarketMatching/old/MarketMatching.Rcheck’
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* using R version 4.1.1 (2021-08-10)
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* using platform: x86_64-pc-linux-gnu (64-bit)
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* using session charset: UTF-8
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* using option ‘--no-manual’
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* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
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* checking extension type ... Package
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* this is package ‘MarketMatching’ version ‘1.2.0’
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* checking package namespace information ... OK
476-
* checking package dependencies ... ERROR
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Packages required but not available: 'CausalImpact', 'bsts', 'Boom'
478-
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See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
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manual.
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* DONE
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Status: 1 ERROR
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484-
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* installing *source* package ‘PLNmodels’ ...
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** package ‘PLNmodels’ successfully unpacked and MD5 sums checked
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** using staged installation
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** libs
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g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
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g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c nlopt_wrapper.cpp -o nlopt_wrapper.o
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g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c optim_diag_cov.cpp -o optim_diag_cov.o
484+
g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c optim_full_cov.cpp -o optim_full_cov.o
485+
g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c optim_genet_cov.cpp -o optim_genet_cov.o
486+
g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fpic -g -O2 -c optim_rank_cov.cpp -o optim_rank_cov.o
487+
...
488+
** building package indices
489+
** installing vignettes
490+
** testing if installed package can be loaded from temporary location
491+
Error: package or namespace load failed for ‘PLNmodels’ in dyn.load(file, DLLpath = DLLpath, ...):
492+
unable to load shared object '/tmp/workdir/PLNmodels/old/PLNmodels.Rcheck/00LOCK-PLNmodels/00new/PLNmodels/libs/PLNmodels.so':
493+
/tmp/workdir/PLNmodels/old/PLNmodels.Rcheck/00LOCK-PLNmodels/00new/PLNmodels/libs/PLNmodels.so: undefined symbol: nlopt_set_min_objective
494+
Error: loading failed
495+
Execution halted
496+
ERROR: loading failed
497+
* removing ‘/tmp/workdir/PLNmodels/old/PLNmodels.Rcheck/PLNmodels’
486498

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488500
```

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