Bump the uv-dependencies group across 1 directory with 15 updates #348

dependabot · 2025-11-05T18:20:13Z

Bumps the uv-dependencies group with 15 updates in the / directory:

Package	From	To
biopython	`1.85`	`1.86`
django-anymail	`10.0`	`13.1`
django-crispy-forms	`1.13.0`	`2.4`
django-reversion-compare	`0.19.0`	`0.19.1`
django	`5.2.7`	`5.2.8`
drf-spectacular	`0.28.0`	`0.29.0`
google-auth	`2.41.1`	`2.42.1`
numpy	`2.2.6`	`2.3.4`
django-structlog	`9.1.1`	`10.0.0`
scout-apm	`3.4.0`	`3.5.0`
structlog	`25.4.0`	`25.5.0`
djangorestframework-stubs	`3.16.4`	`3.16.5`
ipython	`9.6.0`	`9.7.0`
prek	`0.2.11`	`0.2.13`
ruff	`0.14.1`	`0.14.3`

Updates biopython from 1.85 to 1.86

Changelog

Sourced from biopython's changelog.

28 October 2025: Biopython 1.86

This release of Biopython supports Python 3.10, 3.11, 3.12, 3.13 and 3.14. It has also been tested on PyPy3.10 v7.3.19.

Bio.SearchIO now supports parsing the tabular and plain text output of Infernal <http://eddylab.org/infernal/> (v1.0.0+) RNA search tool. The format names are infernal-tab and infernal-text.

The default value of the gap score of a PairwiseAligner object was changed in this release. Previously, for consistency with Bio.pairwise2, the default value for gap score was 0. However, this means that a mismatch, an insertion followed by a deletion, and a deletion followed by an insertion all get assigned a score of 0. The aligner then finds a large number of alignments that are logically the same, but have trivial differences between them. For example, aligning AAACAAA to AAAGAAA previously yielded the following three alignments, all with score 6::
 AAACAAA        AAAC-AAA        AAA-CAAA
 AAAGAAA        AAA-GAAA        AAAG-AAA
With the new default parameter for the gap score, only the first alignment is returned.

Bio.PDB.PDBIO now ensures that b-factor values are always at most 6 characters to ensure that we do not violate the wwPDB specification. This should not have an impact on the majority of uses, as b-factor values are generally small (less than 100). When 1000 <= b-factor < 10_000, the value is rounded to a single decimal place. When, 10_000 <= b-factor < 999_999, the value is rounded to zero decimal places. Values above 999_999 are now clamped. The justification for this is the rise in the b-factor field being used for additional metadata, typically from computational tools.

Bio.Align now provides a method Alignment.from_alignments_with_same_reference to construct a multiple sequence alignment from a collection of alignments that share the same reference sequence.

Bio.PDB.PDBIO will now raise module specific warnings: Bio.PDB.PDBExceptions.PDBIOWarning.

Bio.PDB.SCADIO now supports object selection by color in the OpenSCAD output file. This enables generation of separate STL files for each color for printing protein structures on multi-material 3D printers.

The iplotx library is mentioned in the Tutorial as an option to visualise trees using complex style options.

Many thanks to the Biopython developers and community for making this release possible, especially the following contributors:

... (truncated)

Commits

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Updates django-anymail from 10.0 to 13.1

Release notes

Sourced from django-anymail's releases.

v13.1

Changelog

v13.0.1

Changelog

v13.0

Changelog

v12.0

Changelog

v11.1

Changelog

v11.0.1

Changelog

(This release is solely to update documentation and metadata. Code is identical to v11.0.)

v11.0

Breaking changes for Amazon SES; SparkPost (with template_id)

New merge_headers feature

And more…

Please check the changelog

v10.3

Changelog

v10.2

Changelog

v10.1

Changelog

Changelog

Sourced from django-anymail's changelog.

v13.1

2025-09-03

Features
* **Scaleway:** Add support for this ESP.
  (See `docs <https://anymail.dev/en/stable/esps/scaleway/>`__.
  Thanks to `@hleroy`_ for the contribution.)

SendGrid: Add optional signature verification for tracking webhooks.
To support this, Anymail now includes the :pypi:cryptography package when
installed with the django-anymail[sendgrid] extra.
(Thanks to @blag_ for contributing this improvement. Note this was tested
against SendGrid's live API by its contributor at the time it was added,
but cannot be independently verified by Anymail's maintainers as we
no longer have access &lt;https://github.com/anymail/django-anymail/issues/432&gt;__
to a SendGrid test account.)

v13.0.1
2025-07-25
Breaking changes (external)
SendGrid: Anymail no longer officially supports SendGrid, because we are unable to test it. Although it will probably keep working, you'll get warnings about this change in status. See Dropping support for SendGrid <https://github.com/anymail/django-anymail/issues/432>__ for details and actions SendGrid customers can take. (Since this breaking change is due to external causes and impacts SendGrid users on all versions of Anymail, it is being handled as a minor patch release rather than a semver major version change.)

Fixes
* **Amazon SES:** Require boto3 1.24.6 or later to ensure support for the SESv2
  close method. (Thanks to `@mgibeau`_ for identifying the issue.)
v13.0
2025-04-03
</tr></table>

... (truncated)

Commits

74b5e25 Release 13.1
12f2032 Scaleway: cleanup and enable integration tests
8be0aaa Readme: fix test status badges
90367b3 Scaleway: new ESP
4b2d6f8 SendGrid: Add optional webhook signature verification
b8a5ee8 CI: fix typo in release.yml
30c6130 Release 13.0.1
6b27bd9 CI: fix outdated Django 5.2 alpha reference
dfa4ce0 SendGrid: change to "unsupported" status
c29c993 Fix lint
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Updates django-crispy-forms from 1.13.0 to 2.4

Release notes

Sourced from django-crispy-forms's releases.

2.4

Added support for Python 3.13.

Confirmed support for Django 5.2.

2.3

What's Changed

Fixed unexpected addition the 'active' css_class to AccordionGroup

2.2

Added support for Django 5.1.

Allowed pass through of context when rendering a Fieldset layout object.

Full Changelog: django-crispy-forms/django-crispy-forms@2.1...2.2

2.1

What's Changed

Added support for Django 5.0.

Dropped support for Django 3.2, 4.0 and 4.1.

Added support for Python 3.12.

Dropped support for Python 3.7.

New Contributors

@DanielSwain made their first contribution in django-crispy-forms/django-crispy-forms#1340

@sankarebarri made their first contribution in django-crispy-forms/django-crispy-forms#1342

@foarsitter made their first contribution in django-crispy-forms/django-crispy-forms#1353

Full Changelog: django-crispy-forms/django-crispy-forms@2.0...2.1

2.0 (2023-02-13)

Major Changes and Migration Guide
Removed all Bootstrap template packs. These template packs are now available as standalone packages. To upgrade, install the required template pack and add it to your INSTALLED_APPS setting.

Boostrap 2: PyPI -- GitHub

Boostrap 3: PyPI -- GitHub

Boostrap 4: PyPI -- GitHub

Also, support for Bootstrap 5 is provided by a 3rd party package under the django-crispy-forms organisation at crispy-bootstrap5.
Removed uni-form template pack. Uni-Form specific classes previously added to every template pack e.g. textInput are now removed. If you require these classes, the previous behaviour can be restored by adding the following to CRISPY_CLASS_CONVERTERS in your settings file.
  converters = {

... (truncated)

Changelog

Sourced from django-crispy-forms's changelog.

2.4 (2025-04-13)

Added support for Python 3.13.

Confirmed support for Django 5.2.

2.3 (2024-07-19)

Fixed a bug in AccordionGroup rendering then it gets an unexpected css class active.

2.2 (2024-06-15)

Added support for Django 5.1.

Allowed pass through of context when rendering a Fieldset layout object.

2.1 (2023-10-15)

Added support for Django 5.0.

Dropped support for Django 3.2, 4.0 and 4.1.

Added support for Python 3.12.

Dropped support for Python 3.7.

See the 2.1 Milestone for the full change list.

2.0 (2023-02-13)

Release of django-crispy-forms 2.0. No changes introduced since 2.0a1.

2.0a1 (2023-01-18)

Major Changes and Migration Guide
Removed all Bootstrap template packs. These template packs are now available as standalone packages. To upgrade, install the required template pack and add it to your INSTALLED_APPS setting.

Boostrap 2: PyPI -- GitHub

Boostrap 3: PyPI -- GitHub

Boostrap 4: PyPI -- GitHub

Also, support for Bootstrap 5 is provided by a 3rd party package under the django-crispy-forms organisation at crispy-bootstrap5.
Removed uni-form template pack. Uni-Form specific classes previously added to every template pack e.g. textInput are now removed. If you require these classes, the previous behaviour can be restored by adding the following to CRISPY_CLASS_CONVERTERS in your settings file.
  converters = {
    "textinput": "textinput textInput",
    "fileinput": "fileinput fileUpload",
    "passwordinput": "textinput textInput",
}
The uni-form template pack allowed for rendering of templates using a default or inline layout. As the uni-form template pack has been removed support for this has also been removed. This has resulted in the following BREAKING changes.

... (truncated)

Commits

b3f1d22 2.4 Release. (#1412)
ac2479e Update GitHub action versions in workflows. (#1411)
bb7030a Confirmed Django 5.2 support. (#1407)
a4fb3c7 Pre-commit autoupdate. (#1404)
e7cc89a Added Python 3.13 support. (#1403)
e07622d Version 2.3. (#1396)
64f4b21 Fixed unexpected addition the 'active' css_class to AccordionGroup (#1394)
4f454cd Version 2.2. (#1392)
086afbb Fix documentation of Field's constructor (#1375)
f9d67d3 Allowed pass through of context when rendering a Fieldset layout object. ...
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Updates django-reversion-compare from 0.19.0 to 0.19.1

Commits

0ca5544 Merge pull request #265 from jedie/update
677a7b4 Apply manageprojects updates + update requirements
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Updates django from 5.2.7 to 5.2.8

Commits

47fe39a [5.2.x] Bumped version for 5.2.8 release.
ac9fcf6 [5.2.x] Refs CVE-2025-64459 -- Avoided propagating invalid arguments to Q on ...
6703f36 [5.2.x] Fixed CVE-2025-64459 -- Prevented SQL injections in Q/QuerySet via th...
4f5d904 [5.2.x] Fixed CVE-2025-64458 -- Mitigated potential DoS in HttpResponseRedire...
cbdf128 [5.2.x] Fixed #36704 -- Fixed system check error for proxy model with a compo...
6775888 [5.2.x] Fixed #36696 -- Fixed NameError when inspecting functions with deferr...
d5dfffa [5.2.x] Added stub release notes and release date for 5.2.8, 5.1.14, and 4.2.26.
368f955 [5.2.x] Fixed #36681 -- Removed English pluralization bias from example in do...
71267c9 [5.2.x] Fixed #35095 -- Clarified Swiss number formatting in docs/topics/i18n...
9b37bd5 [5.2.x] Made RemoteTestResultTest.test_pickle_errors_detection() compatible w...
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Updates drf-spectacular from 0.28.0 to 0.29.0

Release notes

Sourced from drf-spectacular's releases.

0.29.0

Thank you for all the patience with the release!

Important notes

Finally fixed the memory leak thanks to @artKucher.

Another performance improvement is the usage of the C versions of yaml, if available.

Apart from that, there are a lot of small improvements and bugfixes.

PRs

Link to SerializerMethod docs by @johnthagen in tfranzel/drf-spectacular#1377

Document Django 5.1 support in README by @johnthagen in tfranzel/drf-spectacular#1376

Bump django from 4.2.11 to 4.2.18 in /requirements by @dependabot[bot] in tfranzel/drf-spectacular#1366

Document how to lazily annotate a recursive SerializerMethod by @johnthagen in tfranzel/drf-spectacular#1384

Fix docs compile issue and update some old code by @mikemanger in tfranzel/drf-spectacular#1389

Add allauth's DRF token auth #1401 by @tfranzel in tfranzel/drf-spectacular#1404

Bump django from 4.2.18 to 4.2.20 in /requirements by @dependabot[bot] in tfranzel/drf-spectacular#1403

Allow setting callable for ENUM_NAME_OVERRIDES by @q0w in tfranzel/drf-spectacular#1406

fix: correct port mapping for the container in README by @mbienkowsk in tfranzel/drf-spectacular#1408

Fix python 3.11 slice index by @yegorLitvinov in tfranzel/drf-spectacular#1411

Add Django REST framework 3.16 support by @pauloxnet in tfranzel/drf-spectacular#1420

fixes prefix estimation on windows by @originell in tfranzel/drf-spectacular#1440

Bump django from 4.2.20 to 4.2.24 in /requirements by @dependabot[bot] in tfranzel/drf-spectacular#1451

fix: sort list to produce same hash by @florianvazelle in tfranzel/drf-spectacular#1433

Add typing.Generic to default lib_doc_excludes by @maxhowald in tfranzel/drf-spectacular#1429

Fix DecimalField with decimal_places and max_digits equal. by @keter2002 in tfranzel/drf-spectacular#1457

Fix default for array types by @TheSuperiorStanislav in tfranzel/drf-spectacular#1437

Bump django from 4.2.24 to 4.2.25 in /requirements by @dependabot[bot] in tfranzel/drf-spectacular#1458

Fix OpenApiViewExtension not providing view instance under self.target by @astro-stan in tfranzel/drf-spectacular#1405

Enhance bug report template with instructions for better clarity. by @Antoliny0919 in tfranzel/drf-spectacular#1357

Add option to overwrite serializer description #1463 by @tfranzel in tfranzel/drf-spectacular#1464

Improve to_filter_name support for django_filter by @matwey in tfranzel/drf-spectacular#1446

fix: camelize tuples/fixed length array by @CharString in tfranzel/drf-spectacular#1432

Fix memory leak by @artKucher in tfranzel/drf-spectacular#1416

fix: add check condition, that serializer meta has model attribute by @kritohanzo in tfranzel/drf-spectacular#1397

[django-filter] Add null_label if set in ChoiceFilter by @epou in tfranzel/drf-spectacular#1450

Add l18n handling for Decimal field #1466 by @tfranzel in tfranzel/drf-spectacular#1467

New Contributors

@mikemanger made their first contribution in tfranzel/drf-spectacular#1389

@mbienkowsk made their first contribution in tfranzel/drf-spectacular#1408

@yegorLitvinov made their first contribution in tfranzel/drf-spectacular#1411

@pauloxnet made their first contribution in tfranzel/drf-spectacular#1420

@originell made their first contribution in tfranzel/drf-spectacular#1440

@florianvazelle made their first contribution in tfranzel/drf-spectacular#1433

@maxhowald made their first contribution in tfranzel/drf-spectacular#1429

@keter2002 made their first contribution in tfranzel/drf-spectacular#1457

@TheSuperiorStanislav made their first contribution in tfranzel/drf-spectacular#1437

@astro-stan made their first contribution in tfranzel/drf-spectacular#1405

... (truncated)

Changelog

Sourced from drf-spectacular's changelog.

0.29.0 (2025-11-01)

Add l18n handling for Decimal field [#1466](https://github.com/tfranzel/drf-spectacular/issues/1466) <https://github.com/tfranzel/drf-spectacular/issues/1466>_

Fix LogoutSerializer for JWT/dj_rest_auth [#1392](https://github.com/tfranzel/drf-spectacular/issues/1392) <https://github.com/tfranzel/drf-spectacular/issues/1392>_

fix: support token blacklist feature in rest_auth [Bart van Andel]

[django-filter] Add null_label if set in ChoiceFilter ([#1450](https://github.com/tfranzel/drf-spectacular/issues/1450) <https://github.com/tfranzel/drf-spectacular/issues/1450>_) [Enric Pou]

fix: camelize tuples/fixed length array ([#1432](https://github.com/tfranzel/drf-spectacular/issues/1432) <https://github.com/tfranzel/drf-spectacular/issues/1432>_) [Chris Wesseling]

Fix items:False case in enum hook [#1432](https://github.com/tfranzel/drf-spectacular/issues/1432) <https://github.com/tfranzel/drf-spectacular/issues/1432>_

Add option to overwrite serializer description [#1463](https://github.com/tfranzel/drf-spectacular/issues/1463) <https://github.com/tfranzel/drf-spectacular/issues/1463>_

Fix OpenApiViewExtension not providing view instance under self.target ([#1405](https://github.com/tfranzel/drf-spectacular/issues/1405) <https://github.com/tfranzel/drf-spectacular/issues/1405>_) [astro-stan]

Move list default fix to source of the problem [#1436](https://github.com/tfranzel/drf-spectacular/issues/1436) <https://github.com/tfranzel/drf-spectacular/issues/1436>_

Improve confusing doc [#1461](https://github.com/tfranzel/drf-spectacular/issues/1461) <https://github.com/tfranzel/drf-spectacular/issues/1461>_

Add assert to pagination test [#1459](https://github.com/tfranzel/drf-spectacular/issues/1459) <https://github.com/tfranzel/drf-spectacular/issues/1459>_

fix SafeString handling for picky CDumper ([#1435](https://github.com/tfranzel/drf-spectacular/issues/1435) <https://github.com/tfranzel/drf-spectacular/issues/1435>_)

Remove EOL 3.7 from suite; pydantic not updated for <=3.8

Fix DecimalField with decimal_places and max_digits equal. [keter2002]

fix test for i18n changes on DRF ([#1444](https://github.com/tfranzel/drf-spectacular/issues/1444) <https://github.com/tfranzel/drf-spectacular/issues/1444>_)

Improve to_filter_name support for django_filter [Matwey V. Kornilov]

fixes prefix estimation on windows [Luis Nell]

Fix default for array types [Stanislav Khlud]

fix: use CSafeDumper for render yaml if available [florian]

fix: sort list to produce same hash [florian]

Add typing.Generic to default lib_doc_excludes [Max Howald]

Add get_doc test for class that inherits from Generic [Max Howald]

Add Django REST framework 3.16 support [Paolo Melchiorre]

Fix memory leak [artemkucher]

Fix python 3.11 slice index [Egor Litvinov]

fix: correct port mapping for the container in README [Maksym Bieńkowski]

Update docs [q0w]

Allow setting callable for ENUM_NAME_OVERRIDES [q0w]

Add allauth's DRF token auth [#1401](https://github.com/tfranzel/drf-spectacular/issues/1401) <https://github.com/tfranzel/drf-spectacular/issues/1401>_

update away from retired GH worker image

add condition to check, that serializer Meta has model attribute [aliev_vt]

Fix docs compile issue and update some old code ([#1389](https://github.com/tfranzel/drf-spectacular/issues/1389) <https://github.com/tfranzel/drf-spectacular/issues/1389>_) [Mike Manger]

Fix location of @extend_schema_field [johnthagen]

Remove reference to non-exposed lazy_serializer [johnthagen]

Document how to lazily define a recursive SerializerMethod [johnthagen]

Link to SerializerMethod docs [johnthagen]

Document Django 5.1 support in README [johnthagen]

Bump django from 4.2.11 to 4.2.18 in /requirements [dependabot[bot]]

Enhance bug report template with instructions for better clarity [antoliny0919]

add pydantic computed field to tests [#1354](https://github.com/tfranzel/drf-spectacular/issues/1354) <https://github.com/tfranzel/drf-spectacular/issues/1354>_

Breaking changes / important additions:

Finally fixed the memory leak thanks to @artKucher.

Another performance improvement is the usage of the C versions of yaml, if available.

Apart from that, there are a lot of small improvements and bugfixes.

Commits

7a7a1f2 disable py3.8 target due to pyproject.toml issues
ff7a62b fix docs
e58143b version bump
e40b287 Renovate project setup #1162
62fc98b Merge pull request #1467 from tfranzel/decimal_l18n
d7247a5 Add l18n handling for Decimal field #1466
5221afd Merge branch '#1392'
88302fa Fix LogoutSerializer for JWT/dj_rest_auth #1392
f7138e3 fix: support token blacklist feature in rest_auth
2c71a35 [django-filter] Add null_label if set in ChoiceFilter (#1450)
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Updates google-auth from 2.41.1 to 2.42.1

Release notes

Sourced from google-auth's releases.

v2.42.1

2.42.1 (2025-10-30)

Bug Fixes

Catch ValueError for json.loads() (#1842) (b074cad)

v2.42.0

2.42.0 (2025-10-24)

Features

Add trust boundary support for external accounts. (#1809) (36ecb1d)

Bug Fixes

Read scopes from ADC json for impersoanted cred (#1820) (62c0fc8)

Changelog

Sourced from google-auth's changelog.

2.42.1 (2025-10-30)

Bug Fixes

Catch ValueError for json.loads() (#1842) (b074cad)

2.42.0 (2025-10-24)

Features

Add trust boundary support for external accounts. (#1809) (36ecb1d)

Bug Fixes

Read scopes from ADC json for impersoanted cred (#1820) (62c0fc8)

Commits

5d1b862 chore(main): release 2.42.1 (#1853)
b074cad fix: catch ValueError for json.loads() (#1842)
cb62f57 chore: secret update (#1851)
2f8826d chore(main): release 2.42.0 (#1819)
aca34b5 chore: secret update (#1847)
62c0fc8 fix: Read scopes from ADC json for impersoanted cred (#1820)
36ecb1d feat: Add trust boundary support for external accounts. (#1809)
10823c2 chore: secret update (#1818)
e16d70b test: Add tests to cover deprecation and suppression (#1817)
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Updates numpy from 2.2.6 to 2.3.4

Release notes

Sourced from numpy's releases.

v2.3.4 (Oct 15, 2025)

NumPy 2.3.4 Release Notes

The NumPy 2.3.4 release is a patch release split between a number of maintenance updates and bug fixes. This release supports Python versions 3.11-3.14. This release is based on Python 3.14.0 final.

Changes

The npymath and npyrandom libraries now have a .lib rather than a .a file extension on win-arm64, for compatibility for building with MSVC and setuptools. Please note that using these static libraries is discouraged and for existing projects using it, it's best to use it with a matching compiler toolchain, which is clang-cl on Windows on Arm.

(gh-29750)

Contributors

A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

!DWesl

Charles Harris

Christian Barbia +

Evgeni Burovski

Joren Hammudoglu

Maaz +

Mateusz Sokół

Matti Picus

Nathan Goldbaum

Ralf Gommers

Riku Sakamoto +

Sandeep Gupta +

Sayed Awad

Sebastian Berg

Sergey Fedorov +

Warren Weckesser

dependabot[bot]

Pull requests merged

A total of 30 pull requests were merged for this release.

#29725: MAINT: Prepare 2.3.x for further development

#29781: MAINT: Pin some upstream dependences

#29782: BLD: enable x86-simd-sort to build on KNL with -mavx512f

#29783: BUG: Include python-including headers first (#29281)

#29784: TYP: fix np.number and np.*integer method declaration

#29785: TYP: mypy 1.18.1

... (truncated)

Commits

1458b9e REL: Prepare for the NumPy 2.3.4 release (#29955)
7583bed Merge pull request #29950 from charris/backport-29885
3186751 Merge pull request #29949 from charris/backport-29948
7fd2ad9 STY: rename @classmethod arg to cls
fe8447d MAINT: Simplify string arena growth strategy (#29885)
a90f073 Merge pull request #29940 from charris/backport-29937
55d91ab MAINT: Bump pypa/cibuildwheel from 3.1.4 to 3.2.1
e2f0383 Merge pull request #29926 from charris/backport-29609
b427e83 BUG: fix negative samples generated by Wald distribution (#29609)
36363d6 Merge pull request #29922 from charris/backport-29914
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Updates django-structlog from 9.1.1 to 10.0.0

Changelog

Sourced from django-structlog's changelog.

10.0.0 (October 22, 2025)

New: - Add 5xx and cancelled request log level config. See [#935](https://github.com/jrobichaud/django-structlog/issues/935) <https://github.com/jrobichaud/django-structlog/pull/935>. Special thanks to @fcortes <https://github.com/fcortes>. - Add python 3.14 support. See [#937](https://github.com/jrobichaud/django-structlog/issues/937) <https://github.com/jrobichaud/django-structlog/pull/937>_.

Changes: - Drop python 3.9 support.

Commits

6c2feb5 Merge pull request #938 from jrobichaud/fix-readme
efcd704 fix error in readme (gotta add a checker)
fa277f6 Merge pull request #937 from jrobichaud/python-3.14
238d813 Fix mypy regression when dropping 3.9
ee56156 Add python 3.14 support
f46461e Merge pull request #936 from jrobichaud/update-changelog
c76d11f update changelog
fbc9dea Merge pull request #935 from fcortes/add-access-log-level-config
a86d073 feat(env): add REQUEST_CANCELLED_LOG_LEVEL config
9268401 feat(env): add STATUX_5XX_LOG_LEVEL config
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Updates scout-apm from 3.4.0 to 3.5.0

Changelog

Sourced from scout-apm's changelog.

[3.5.0] 2025-10-31

Added

Instrumentation for FastMCP via fastmcp.ScoutMiddleware (#818)

Formal support for Python 3.13 and 3.14 (#819)

Formal support for Django 5.1 and 5.2

Use strict data filter for tar extraction (#820)

Removed

Formal Python 3.9 support.

Commits

185641a bump version to 3.5.0 (#821)
913a1b0 Use data extraction filter (#820)
8573235 FastMCP Instrumentation (#818)
See full diff in compare view

Updates structlog from 25.4.0 to 25.5.0

Release notes

Sourced from structlog's releases.

25.5.0

Highlights

Huge release! There's plenty of important little bug fixes and new features, but the headliner is definitely the improved ergonomics of structlog.dev.ConsoleRenderer. We have finally accepted that local development has different priorities than production and made it both mutable (with automatic re-configuration) and also easily retrievable (cr = ConsoleRenderer.get_active()). This allows you, for example, to disable Rich exception formatting as easily as structlog.dev.ConsoleRenderer.get_active().exception_formatter = structlog.dev.plain_traceback. Please check out the updated docs!

Full changelog below!

Special Thanks

This release would not be possible without my generous sponsors! Thank you to all of you making sustainable maintenance possible! If you would like to join them, go to https://github.com/sponsors/hynek and check out the sweet perks!

Above and Beyond

Variomedia AG (@variomedia), Tidelift (@tidelift), thanks.dev (@thnxdev), Privacy Solutions GmbH (@privacy-solutions), Quesma (@QuesmaOrg), FilePreviews (@filepreviews), LambdaTest (@LambdaTest-Inc), Doist (@Doist), Daniel Fortunov (@asqui), and Kevin P. Fleming (@kpfleming).

Maintenance Sustainers

Buttondown (@buttondown), Jeff McCarrell (@jmccarrell), Christopher Dignam (@chdsbd), Magnus Watn (@magnuswatn), David Cramer (@dcramer), Jesse Snyder (@jessesnyder), Rivo Laks (@rivol), Polar (@polarsource), Mike Fiedler (@miketheman), Duncan Hill (@cricalix), Colin Marquardt (@cmarqu), Pieter Swinkels (@swinkels), Nick Libertini (@libertininick), Brian M. Dennis (@crossjam), Celebrity News AG (@celebritynewsag), The Westervelt Company (@westerveltco), Sławomir Ehlert (@slafs), Mostafa Khalil (@khadrawy), Filip Mularczyk (@mukiblejlok), Thomas Klinger (@thmsklngr), Andreas Poehlmann (@ap--), August Trapper Bigelow (@atbigelow), Carlton Gibson (@carltongibson), Roboflow (@roboflow), and Jeff McCarrell (@jmccarrell).

Full Changelog

Deprecated

structlog.dev.ConsoleRenderer()'s pad_event argument has been renamed to pad_event_to to differentiate it from the boolean pad_level argument. pad_event is now deprecated.

Added
Added structlog.dev.ConsoleRenderer.get_active() that returns the currently active structlog.dev.ConsoleRenderer(). #749
structlog.dev.ConsoleRenderer() now supports setting the exception_formatter attribute.

You can now disable the pretty-printing of exceptions by setting it to structlog.dev.plain_traceback:
cr = structlog.dev.ConsoleRenderer.get_active()
cr.exception_formatter = structlog.dev.plain_traceback
Same goes for sort_keys, columns, colors, force_colors, level_styles, pad_event_to, event_key, timestamp_key, and repr_native_str.

#749 #756 #757 #759
Added structlog.dev.ConsoleRenderer.get_default_column_styles() for reuse the default column styles. #741

structlog.testing.capture_logs() now optionally accepts processors to apply before capture. #728

... (truncated)

Changelog

Sourced from structlog's changelog.

25.5.0 - 2025-10-27

Deprecated

structlog.dev.ConsoleRenderer()'s pad_event argument has been renamed to pad_event_to to differentiate it from the boolean pad_level argument. pad_event is now deprecated.

Added
Added structlog.dev.ConsoleRenderer.get_active() that returns the currently active structlog.dev.ConsoleRenderer(). #749
structlog.dev.ConsoleRenderer() now supports setting the exception_formatter attribute.

You can now disable the pretty-printing of exceptions by setting it to structlog.dev.plain_traceback:
cr = structlog.dev.ConsoleRenderer.get_active()
cr.exception_formatter = structlog.dev.plain_traceback
Same goes for sort_keys, columns, colors, force_colors, level_styles, pad_event_to, event_key, timestamp_key, and repr_native_str.

#749 #756 #757 #759
Added structlog.dev.ConsoleRenderer.get_default_column_styles() for reuse the default column styles. #741

structlog.testing.capture_logs() now optionally accepts processors to apply before capture. #728

structlog.dev.RichTracebackFormatter now exposes the upstream code_width parameter. Default width is now None for full terminal width. Full terminal width is now handled by Rich itself, bringing support for reflow and COLUMN environment variable. Passing -1 for width is now deprecated and automatically replaced by ...
Description has been truncated

Bumps the uv-dependencies group with 15 updates in the / directory: | Package | From | To | | --- | --- | --- | | [biopython](https://github.com/biopython/biopython) | `1.85` | `1.86` | | [django-anymail](https://github.com/anymail/django-anymail) | `10.0` | `13.1` | | [django-crispy-forms](https://github.com/django-crispy-forms/django-crispy-forms) | `1.13.0` | `2.4` | | [django-reversion-compare](https://github.com/jedie/django-reversion-compare) | `0.19.0` | `0.19.1` | | [django](https://github.com/django/django) | `5.2.7` | `5.2.8` | | [drf-spectacular](https://github.com/tfranzel/drf-spectacular) | `0.28.0` | `0.29.0` | | [google-auth](https://github.com/googleapis/google-auth-library-python) | `2.41.1` | `2.42.1` | | [numpy](https://github.com/numpy/numpy) | `2.2.6` | `2.3.4` | | [django-structlog](https://github.com/jrobichaud/django-structlog) | `9.1.1` | `10.0.0` | | [scout-apm](https://github.com/scoutapp/scout_apm_python) | `3.4.0` | `3.5.0` | | [structlog](https://github.com/hynek/structlog) | `25.4.0` | `25.5.0` | | [djangorestframework-stubs](https://github.com/sponsors/typeddjango) | `3.16.4` | `3.16.5` | | [ipython](https://github.com/ipython/ipython) | `9.6.0` | `9.7.0` | | [prek](https://github.com/j178/prek) | `0.2.11` | `0.2.13` | | [ruff](https://github.com/astral-sh/ruff) | `0.14.1` | `0.14.3` | Updates `biopython` from 1.85 to 1.86 - [Changelog](https://github.com/biopython/biopython/blob/master/NEWS.rst) - [Commits](https://github.com/biopython/biopython/commits) Updates `django-anymail` from 10.0 to 13.1 - [Release notes](https://github.com/anymail/django-anymail/releases) - [Changelog](https://github.com/anymail/django-anymail/blob/main/CHANGELOG.rst) - [Commits](anymail/django-anymail@v10.0...v13.1) Updates `django-crispy-forms` from 1.13.0 to 2.4 - [Release notes](https://github.com/django-crispy-forms/django-crispy-forms/releases) - [Changelog](https://github.com/django-crispy-forms/django-crispy-forms/blob/main/CHANGELOG.md) - [Commits](django-crispy-forms/django-crispy-forms@1.13.0...2.4) Updates `django-reversion-compare` from 0.19.0 to 0.19.1 - [Commits](jedie/django-reversion-compare@v0.19.0...v0.19.1) Updates `django` from 5.2.7 to 5.2.8 - [Commits](django/django@5.2.7...5.2.8) Updates `drf-spectacular` from 0.28.0 to 0.29.0 - [Release notes](https://github.com/tfranzel/drf-spectacular/releases) - [Changelog](https://github.com/tfranzel/drf-spectacular/blob/master/CHANGELOG.rst) - [Commits](tfranzel/drf-spectacular@0.28.0...0.29.0) Updates `google-auth` from 2.41.1 to 2.42.1 - [Release notes](https://github.com/googleapis/google-auth-library-python/releases) - [Changelog](https://github.com/googleapis/google-auth-library-python/blob/main/CHANGELOG.md) - [Commits](googleapis/google-auth-library-python@v2.41.1...v2.42.1) Updates `numpy` from 2.2.6 to 2.3.4 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v2.2.6...v2.3.4) Updates `django-structlog` from 9.1.1 to 10.0.0 - [Changelog](https://github.com/jrobichaud/django-structlog/blob/main/docs/changelog.rst) - [Commits](jrobichaud/django-structlog@9.1.1...10.0.0) Updates `scout-apm` from 3.4.0 to 3.5.0 - [Release notes](https://github.com/scoutapp/scout_apm_python/releases) - [Changelog](https://github.com/scoutapp/scout_apm_python/blob/master/CHANGELOG.md) - [Commits](scoutapp/scout_apm_python@v3.4.0...v3.5.0) Updates `structlog` from 25.4.0 to 25.5.0 - [Release notes](https://github.com/hynek/structlog/releases) - [Changelog](https://github.com/hynek/structlog/blob/main/CHANGELOG.md) - [Commits](hynek/structlog@25.4.0...25.5.0) Updates `djangorestframework-stubs` from 3.16.4 to 3.16.5 - [Commits](https://github.com/sponsors/typeddjango/commits) Updates `ipython` from 9.6.0 to 9.7.0 - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](ipython/ipython@9.6.0...9.7.0) Updates `prek` from 0.2.11 to 0.2.13 - [Release notes](https://github.com/j178/prek/releases) - [Changelog](https://github.com/j178/prek/blob/master/CHANGELOG.md) - [Commits](j178/prek@v0.2.11...v0.2.13) Updates `ruff` from 0.14.1 to 0.14.3 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.14.1...0.14.3) --- updated-dependencies: - dependency-name: biopython dependency-version: '1.86' dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: django-anymail dependency-version: '13.1' dependency-type: direct:production update-type: version-update:semver-major dependency-group: uv-dependencies - dependency-name: django-crispy-forms dependency-version: '2.4' dependency-type: direct:production update-type: version-update:semver-major dependency-group: uv-dependencies - dependency-name: django-reversion-compare dependency-version: 0.19.1 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-dependencies - dependency-name: django dependency-version: 5.2.8 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-dependencies - dependency-name: drf-spectacular dependency-version: 0.29.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: google-auth dependency-version: 2.42.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: numpy dependency-version: 2.3.4 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: django-structlog dependency-version: 10.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: uv-dependencies - dependency-name: scout-apm dependency-version: 3.5.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: structlog dependency-version: 25.5.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: djangorestframework-stubs dependency-version: 3.16.5 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-dependencies - dependency-name: ipython dependency-version: 9.7.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: prek dependency-version: 0.2.13 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-dependencies - dependency-name: ruff dependency-version: 0.14.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-dependencies ... Signed-off-by: dependabot[bot] <[email protected]>

dependabot bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Nov 5, 2025

dependabot bot force-pushed the dependabot/uv/uv-dependencies-96a5524f41 branch from d06ed12 to 22ef3c1 Compare November 6, 2025 03:27

Merge branch 'main' into dependabot/uv/uv-dependencies-96a5524f41

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Bump the uv-dependencies group across 1 directory with 15 updates #348

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28 October 2025: Biopython 1.86

v13.1

v13.0.1

v13.0

v12.0

v11.1

v11.0.1

v11.0

v10.3

v10.2

v10.1

v13.1

v13.0.1

v13.0

2.4

2.3

What's Changed

2.2

2.1

What's Changed

New Contributors

2.0 (2023-02-13)

Major Changes and Migration Guide

2.4 (2025-04-13)

2.3 (2024-07-19)

2.2 (2024-06-15)

2.1 (2023-10-15)

2.0 (2023-02-13)

2.0a1 (2023-01-18)

Major Changes and Migration Guide

0.29.0

Important notes

PRs

New Contributors

0.29.0 (2025-11-01)

v2.42.1

2.42.1 (2025-10-30)

Bug Fixes

v2.42.0

2.42.0 (2025-10-24)

Features

Bug Fixes

2.42.1 (2025-10-30)

Bug Fixes

2.42.0 (2025-10-24)

Features

Bug Fixes

v2.3.4 (Oct 15, 2025)

NumPy 2.3.4 Release Notes

Changes

Contributors

Pull requests merged

10.0.0 (October 22, 2025)

[3.5.0] 2025-10-31

Added

Removed

25.5.0

Highlights

Special Thanks

Above and Beyond

Maintenance Sustainers

Full Changelog

Deprecated

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25.5.0 - 2025-10-27

Deprecated

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