Miscellaneous R script to wrangle data and generate visualizations

Analysing practical examples by using principal component analysis (PCA) and Clustring

This workflow identifies stage-specific transcription factor expression modules in time-series bulk RNA-seq data. The goal is to characterize the "waves" of TF expression that define each stage of a differentiation time-course, then use these control TF clusters as a baseline for assessing how experimental conditions alter this expression

RDS class assignment: reproducible R workflow for gene-expression data—validates inputs, applies log2(+1) transform, maps gene IDs to LongName/Type, and generates two heatmaps plus a treatment-group boxplot. Includes a brief PDF report.

This repository aims to teach the basics of R programming language

Require just one command line! Generate nine common plots from RNAseq result table by R.

Raw scripts for annotation, Venn, heatmap, STRINGdb, and machine learning (ML) workflows.