Integrate baselines from CNMC_PAI (organizer baseline)

README.md

@@ -114,11 +114,15 @@ segmenter.infer_single(
 | 2025 | 2nd  | _Qu Lin, et al._         | N/A                                      | ✅    | [BraTS25_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AdultGliomaPreAndPostTreatmentAlgorithms.BraTS25_2)   |
 | 2025 | 3rd  | _Liwei Jin, et al._      | N/A                                      | ✅    | [BraTS25_3A](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AdultGliomaPreAndPostTreatmentAlgorithms.BraTS25_3A) |
 | 2025 | 3rd  | _Adrian Celaya, et al._  | N/A                                      | ❌    | [BraTS25_3B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AdultGliomaPreAndPostTreatmentAlgorithms.BraTS25_3B) |
+| 2025 | Baseline* | _Abhijeet Parida, et al._ | [Link](https://link.springer.com/chapter/10.1007/978-3-032-16365-3_22) | ❌    | [BraTS25_B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AdultGliomaPreAndPostTreatmentAlgorithms.BraTS25_B) |
 | 2024 | 1st  | _André Ferreira, et al._ |[Link](https://arxiv.org/pdf/2411.04632v1)| ❌    | [BraTS24_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AdultGliomaPostTreatmentAlgorithms.BraTS24_1)         |
 | 2024 | 2nd  | _Heejong Kim, et al._    | [Link](https://arxiv.org/abs/2409.08143) | ❌    | [BraTS24_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AdultGliomaPostTreatmentAlgorithms.BraTS24_2)         |
 | 2024 | 3rd  | _Adrian Celaya_          | N/A                                      | ✅    | [BraTS24_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AdultGliomaPostTreatmentAlgorithms.BraTS24_3)         |
 
 
+> Baseline*: The unranked baseline was provided by participating team(s) that included BraTS organizers. In an unofficial evaluation, it achieved performance within the range of the top 3 officially ranked models.
+<br>
+
 > Note: The MNI152 atlas, available on [Zenodo](https://zenodo.org/records/15927391), was employed for registration in the 2024 and subsequent BraTS Glioma Post-treatment Segmentation challenges.
 
 </details>
@@ -198,6 +202,7 @@ segmenter.infer_single(
 | 2025 | 2nd  | _William Boonzaier, et al._     | N/A                                                  | &#x274C;    | [BraTS25_2A](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AfricaAlgorithms.BraTS25_2A) |
 | 2025 | 2nd  | _Mohtady Barakat, et al._       | N/A                                                  | &#x274C;    | [BraTS25_2B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AfricaAlgorithms.BraTS25_2B) |
 | 2025 | 3rd  | _Ahmed Jaheen, et al._          | N/A                                                  | &#x274C;    | [BraTS25_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AfricaAlgorithms.BraTS25_3)   |
+| 2025 | Baseline* | _Abhijeet Parida, et al._   | [Link](https://link.springer.com/chapter/10.1007/978-3-032-16365-3_22) | &#x274C;    | [BraTS25_B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AfricaAlgorithms.BraTS25_B)   |
 | 2024 | 1st  | _Abhijeet Parida, et al._       | [Link](https://arxiv.org/abs/2412.04111)             | &#x274C;    | [BraTS24_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AfricaAlgorithms.BraTS24_1)   |
 | 2024 | 2nd  | _Yanguang Zhao, et al._         | [Link](https://doi.org/10.48550/arXiv.2410.18698)    | &#x2705;    | [BraTS24_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AfricaAlgorithms.BraTS24_2)   |
 | 2024 | 3rd  | _Sarim Hashmi, et al._          | [Link](https://doi.org/10.48550/arXiv.2411.15872)    | &#x274C;    | [BraTS24_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.AfricaAlgorithms.BraTS24_3)   |
@@ -207,6 +212,9 @@ segmenter.infer_single(
 
 </details>
 
+> Baseline*: The unranked baseline was provided by participating team(s) that included BraTS organizers. In an unofficial evaluation, it achieved performance within the range of the top 3 officially ranked models.
+<br>
+
 > Note: The SRI24 atlas, available on [Zenodo](https://zenodo.org/records/15927391), was employed for registration in BraTS Africa Segmentation challenges.
 <br>
 
@@ -241,11 +249,16 @@ segmenter.infer_single(
 | ---- | ---- | -------------------------------------- | ---------------------------------------------------------- | ----------- | ------------------------------------------------------------------------------------------------------------------- |
 | 2025 | 1st  | _Yu Haitao, et al._                    | N/A                                                        | &#x274C;    | [BraTS25_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaAlgorithms.BraTS25_1) |
 | 2025 | 2nd  | _Mohammad Mahdi Danesh Pajouh, et al._ | N/A                                                        | &#x274C;    | [BraTS25_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaAlgorithms.BraTS25_2) |
+| 2025 | Baseline* | _Daniel Capellán-Martín, et al._   | [Link](https://pmc.ncbi.nlm.nih.gov/articles/PMC13148016)  | &#x274C;    | [BraTS25_B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaAlgorithms.BraTS25_B) |
 | 2023 | 1st  | _Andriy Myronenko, et al._             | [Link](https://arxiv.org/abs/2510.25058)                   | &#x274C;    | [BraTS23_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaAlgorithms.BraTS23_1) |
 | 2023 | 2nd  | _Ziyan Huang, et al._                  | [Link](https://doi.org/10.1007/978-3-031-76163-8_13)       | &#x2705;    | [BraTS23_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaAlgorithms.BraTS23_2) |
 | 2023 | 3rd  | _Daniel Capellán-Martín et al._        | [Link](https://api.semanticscholar.org/CorpusID:272599903) | &#x274C;    | [BraTS23_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaAlgorithms.BraTS23_3) |
 
 </details>
+
+> Baseline*: The unranked baseline was provided by participating team(s) that included BraTS organizers. In an unofficial evaluation, it achieved performance within the range of the top 3 officially ranked models.
+<br>
+
 <br>
 
 #### Meningioma Radio Therapy Segmentation
@@ -276,13 +289,17 @@ segmenter.infer_single(
 | 2025 | 1st  | _Valeria Abramova, et al._     | N/A                                         | &#x274C;    | [BraTS25_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaRTAlgorithms.BraTS25_1) |
 | 2025 | 2nd  | _Sanskriti Srivastava, et al._ | N/A                                         | &#x2705;    | [BraTS25_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaRTAlgorithms.BraTS25_2) |
 | 2025 | 3rd  | _Nima Sadeghzadeh, et al._     | N/A                                         | &#x2705;    | [BraTS25_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaRTAlgorithms.BraTS25_3) |
+| 2025 | Baseline* | _Daniel Capellán-Martín, et al._ | [Link](https://pmc.ncbi.nlm.nih.gov/articles/PMC13148016) | &#x274C;    | [BraTS25_B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaRTAlgorithms.BraTS25_B) |
 | 2024 | 1st  | _Valeria Abramova_             | N/A                                         | &#x274C;    | [BraTS24_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaAlgorithms.BraTS24_1)   |
 | 2024 | 2nd  | _Mehdi Astaraki_               | N/A                                         | &#x274C;    | [BraTS24_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaAlgorithms.BraTS24_2)   |
 | 2024 | 3rd  | _Andre Ferreira, et al._       | [Link](https://arxiv.org/html/2411.04632v1) | &#x2705;    | [BraTS24_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MeningiomaAlgorithms.BraTS24_3)   |
 
 
 </details>
 
+> Baseline*: The unranked baseline was provided by participating team(s) that included BraTS organizers. In an unofficial evaluation, it achieved performance within the range of the top 3 officially ranked models.
+<br>
+
 > Note: The MRI dataset in the Meningioma-Radiotherapy challenge was provided in native space. However,
 the SRI24 atlas, available on [Zenodo](https://zenodo.org/records/15927391), was employed for registration in BraTS Meningioma Pre-operative challenges.
 <br>
@@ -319,12 +336,16 @@ segmenter.infer_single(
 | ---- | ---- | -------------------------- | ---------------------------------------------------- | ----------- | ------------------------------------------------------------------------------------------------------------------- |
 | 2025 | 1st  | _Maria Bancerek, et al._   | N/A                                                  | &#x274C;    | [BraTS25_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MetastasesAlgorithms.BraTS25_1) |
 | 2025 | 2nd  | _Wes Krikorian, et al._    | N/A                                                  | &#x2705;    | [BraTS25_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MetastasesAlgorithms.BraTS25_2) |
+| 2025 | Baseline* | _Daniel Capellán-Martín, et al._ | [Link](https://pmc.ncbi.nlm.nih.gov/articles/PMC13148016) | &#x274C;    | [BraTS25_B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MetastasesAlgorithms.BraTS25_B) |
 | 2023 | 1st  | _Andriy Myronenko, et al._ | [Link](https://arxiv.org/abs/2510.25058)             | &#x274C;    | [BraTS23_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MetastasesAlgorithms.BraTS23_1) |
 | 2023 | 2nd  | _Siwei Yang, et al._       | [Link](https://doi.org/10.1007/978-3-031-76163-8_17) | &#x274C;    | [BraTS23_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MetastasesAlgorithms.BraTS23_2) |
 | 2023 | 3rd  | _Ziyan Huang, et al._      | [Link](https://doi.org/10.1007/978-3-031-76163-8_13) | &#x2705;    | [BraTS23_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.MetastasesAlgorithms.BraTS23_3) |
 
 </details>
 
+> Baseline*: The unranked baseline was provided by participating team(s) that included BraTS organizers. In an unofficial evaluation, it achieved performance within the range of the top 3 officially ranked models.
+<br>
+
 > Note: The SRI24 atlas, available on [Zenodo](https://zenodo.org/records/15927391), was employed for registration in BraTS Metastasis segmentation challenges.
 <br>
 
@@ -352,6 +373,8 @@ segmenter.infer_single(
 
 **Class:** `brats.PediatricSegmenter` ([Docs](https://brats.readthedocs.io/en/latest/core/segmentation_algorithms.html#brats.core.segmentation_algorithms.PediatricSegmenter))
 <br>
+**BraTS-PEDs Dataset Paper 2026** [Link](https://doi.org/10.1148/ryai.250902)
+<br>
 **Challenge Paper 2024** [Link](https://doi.org/10.48550/arXiv.2404.15009)
 <br>
 **Challenge Results Paper 2023** [Link](https://doi.org/10.48550/arXiv.2407.08855)
@@ -364,6 +387,7 @@ segmenter.infer_single(
 | 2025 | 1st  | _Yuxiao Yi, et al._              | N/A                                                        | &#x274C;    | [BraTS25_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.PediatricAlgorithms.BraTS25_1) |
 | 2025 | 2nd  | _Meng-Yuan Chen, et al._         | N/A                                                        | &#x274C;    | [BraTS25_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.PediatricAlgorithms.BraTS25_2) |
 | 2025 | 3rd  | _Haitao Yu, et al._              | N/A                                                        | &#x274C;    | [BraTS25_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.PediatricAlgorithms.BraTS25_3) |
+| 2025 | Baseline* | _Daniel Capellán-Martín, et al._ | [Link](https://pmc.ncbi.nlm.nih.gov/articles/PMC13148016/) | &#x274C;    | [BraTS25_B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.PediatricAlgorithms.BraTS25_B) |
 | 2024 | 1st  | _Mehdi Astaraki_                 | N/A                                                        | &#x274C;    | [BraTS24_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.PediatricAlgorithms.BraTS24_1) |
 | 2024 | 2nd  | _Tim Mulvany, et al._            | [Link](https://doi.org/10.48550/arXiv.2410.14020)          | &#x274C;    | [BraTS24_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.PediatricAlgorithms.BraTS24_2) |
 | 2024 | 3rd  | _Sarim Hashmi, et al._           | [Link](https://doi.org/10.48550/arXiv.2411.15872)          | &#x274C;    | [BraTS24_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.PediatricAlgorithms.BraTS24_3) |
@@ -374,6 +398,9 @@ segmenter.infer_single(
 
 </details>
 
+> Baseline*: The unranked baseline was provided by participating team(s) that included BraTS organizers. In an unofficial evaluation, it achieved performance within the range of the top 3 officially ranked models.
+<br> 
+
 > Note: The SRI24 atlas, available on [Zenodo](https://zenodo.org/records/15927391), was employed for registration in BraTS Pediatric Tumor Segmentation challenges.
 <br>
 
@@ -447,6 +474,7 @@ inpainter.infer_single(
 | 2025 | 1st  | _Juexin Zhang, et al._   | N/A                                                  | &#x274C;    | [BraTS25_1A](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.InpaintingAlgorithms.BraTS25_1A) |
 | 2025 | 1st  | _André Ferreira, et al._ | N/A                                                  | &#x274C;    | [BraTS25_1B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.InpaintingAlgorithms.BraTS25_1B) |
 | 2025 | 2nd  | _Juhyung Ha, et al._     | N/A                                                  | &#x274C;    | [BraTS25_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.InpaintingAlgorithms.BraTS25_2)   |
+| 2025 | Baseline* | _Nishad Kulkarni, et al._ | [Link](https://link.springer.com/chapter/10.1007/978-3-032-16370-7_13) | &#x274C;    | [BraTS25_B](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.InpaintingAlgorithms.BraTS25_B)   |
 | 2024 | 1st  | _Juexin Zhang et al._    | [Link](https://doi.org/10.48550/arXiv.2507.18126)    | &#x2705;    | [BraTS24_1](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.InpaintingAlgorithms.BraTS24_1)   |
 | 2024 | 2nd  | _André Ferreira, et al._ | [Link](https://arxiv.org/html/2411.04630v2)          | &#x274C;    | [BraTS24_2](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.InpaintingAlgorithms.BraTS24_2)   |
 | 2024 | 3rd  | _Alicia Durrer, et al._  | N/A                                                  | &#x274C;    | [BraTS24_3](https://brats.readthedocs.io/en/latest/utils/utils.html#brats.constants.InpaintingAlgorithms.BraTS24_3)   |
@@ -456,6 +484,9 @@ inpainter.infer_single(
 
 </details>
 
+> Baseline*: The unranked baseline was provided by participating team(s) that included BraTS organizers. In an unofficial evaluation, it achieved performance within the range of the top 3 officially ranked models.
+<br>
+
 > Note: The datasets used in this challenge were adapted from other segmentation challenges, so the atlas type depends on the original dataset.
 <br>
 

brats/constants.py

@@ -47,6 +47,8 @@ class AdultGliomaPreAndPostTreatmentAlgorithms(Algorithms):
     """ BraTS25 Adult Glioma Segmentation 3rd place (tie) """
     BraTS25_3B = "BraTS25_3B"
     """ BraTS25 Adult Glioma Segmentation 3rd place (tie) """
+    BraTS25_B = "BraTS25_B"
+    """ BraTS25 Adult Glioma Segmentation baseline """
 
     BraTS24_1 = "BraTS24_1"
     """ BraTS24 Adult Glioma Segmentation 1st place """
@@ -76,6 +78,8 @@ class MeningiomaRTAlgorithms(Algorithms):
     """ BraTS25 Meningioma Segmentation 2nd place """
     BraTS25_3 = "BraTS25_3"
     """ BraTS25 Meningioma Segmentation 3rd place """
+    BraTS25_B = "BraTS25_B"
+    """ BraTS25 Meningioma Segmentation baseline """
 
     BraTS24_1 = "BraTS24_1"
     """ BraTS24 Meningioma Segmentation 1st place """
@@ -92,6 +96,8 @@ class MeningiomaAlgorithms(Algorithms):
     """BraTS25 Meningioma Segmentation 1st place """
     BraTS25_2 = "BraTS25_2"
     """BraTS25 Meningioma Segmentation 2nd place """
+    BraTS25_B = "BraTS25_B"
+    """BraTS25 Meningioma Segmentation baseline """
 
     BraTS23_1 = "BraTS23_1"
     """BraTS23 Meningioma Segmentation 1st place (GPU only)"""
@@ -110,6 +116,8 @@ class PediatricAlgorithms(Algorithms):
     """ BraTS25 Pediatric Segmentation 2nd place"""
     BraTS25_3 = "BraTS25_3"
     """ BraTS25 Pediatric Segmentation 3rd place"""
+    BraTS25_B = "BraTS25_B"
+    """ BraTS25 Pediatric Segmentation baseline"""
 
     BraTS24_1 = "BraTS24_1"
     """ BraTS24 Pediatric Segmentation 1st place """
@@ -137,6 +145,8 @@ class AfricaAlgorithms(Algorithms):
     """ BraTS25 BraTS-SSA Segmentation 2nd place (Tie) """
     BraTS25_3 = "BraTS25_3"
     """ BraTS25 BraTS-SSA Segmentation 3rd place """
+    BraTS25_B = "BraTS25_B"
+    """ BraTS25 BraTS-SSA Segmentation baseline """
 
     BraTS24_1 = "BraTS24_1"
     """ BraTS24 BraTS-Africa Segmentation 1st place """
@@ -160,6 +170,8 @@ class MetastasesAlgorithms(Algorithms):
     """BraTS25  Brain Metastases Segmentation 1st place"""
     BraTS25_2 = "BraTS25_2"
     """BraTS25  Brain Metastases Segmentation 2nd place"""
+    BraTS25_B = "BraTS25_B"
+    """BraTS25  Brain Metastases Segmentation baseline"""
 
     BraTS23_1 = "BraTS23_1"
     """BraTS23  Brain Metastases Segmentation 1st place (GPU only)"""
@@ -178,6 +190,8 @@ class InpaintingAlgorithms(Algorithms):
     """ BraTS25  Inpainting shared 1st place (tie)"""
     BraTS25_2 = "BraTS25_2"
     """ BraTS25  Inpainting 2nd place """
+    BraTS25_B = "BraTS25_B"
+    """ BraTS25  Inpainting baseline """
 
     BraTS24_1 = "BraTS24_1"
     """ BraTS24  Inpainting 1st place """

brats/data/meta/adult_glioma_pre_and_post_treatment.yml

@@ -11,6 +11,7 @@ constants:
     1st: &rank_1 1st
     2nd: &rank_2 2nd
     3rd: &rank_3 3rd
+    Baseline: &rank_baseline Baseline
 
 
 algorithms:
@@ -68,6 +69,18 @@ algorithms:
       docker_image: brainles/brats25_gli_mist:latest
       input_name_schema: *input_name_schema
 
+  BraTS25_B:
+    meta:
+      authors: Abhijeet Parida, et al.
+      paper: https://link.springer.com/chapter/10.1007/978-3-032-16365-3_22
+      challenge: *challenge
+      challenge_manuscript: *challenge_manuscript_2025
+      rank: *rank_baseline
+      year: *year_2025
+    run_args:
+      docker_image: aparida12/brats2025:gli
+      input_name_schema: *input_name_schema
+
 ##### 2024 #####
   BraTS24_1:
     meta:

brats/data/meta/africa.yml

@@ -14,6 +14,7 @@ constants:
     1st: &rank_1 1st
     2nd: &rank_2 2nd
     3rd: &rank_3 3rd
+    Baseline: &rank_baseline Baseline
 
 
 algorithms:
@@ -77,6 +78,20 @@ algorithms:
       input_name_schema: *input_name_schema
       requires_root: true
 
+  BraTS25_B:
+    meta:
+      authors: Abhijeet Parida, et al.
+      paper: https://link.springer.com/chapter/10.1007/978-3-032-16365-3_22
+      challenge: *challenge
+      challenge_manuscript: *challenge_manuscript_2025
+      rank: *rank_baseline
+      year: *year_2025
+      dataset_manuscript: *dataset_manuscript
+    run_args:
+      docker_image: aparida12/brats2025:ssa
+      input_name_schema: *input_name_schema
+      requires_root: true
+
 ##### 2024 #####
 
   BraTS24_1:
@@ -182,4 +197,3 @@ algorithms:
       requires_root: true
       parameters_file: true
       cpu_compatible: true
-