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Fix affine source when t1c_file is None #1

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Fix affine source when t1c_file is None #1

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6 changes: 5 additions & 1 deletion predict_gbm/evaluation/evaluate.py
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Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,11 @@ def evaluate_tumor_model(
)

# Brain masking
affine = nib.load(str(t1c_file)).affine
if t1c_file is not None:
affine = nib.load(str(t1c_file)).affine
else:
affine = nib.load(str(brain_mask_file)).affine

if brain_mask_file is None:
t1c = load_mri_data(str(t1c_file))
background = np.min(t1c)
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