Migrate sampled-ancestors to BEAST 3#25
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- Two-module structure: beast-sampled-ancestors (core, no JavaFX) and beast-sampled-ancestors-fx (BEAUti editors and fx-dependent tools) - Maven build with JPMS module-info.java for both modules - Migrate commons-math to commons-statistics API (DegenerateBeta, DegenerateUniform, SABDTreeSimulator) - Update version.xml to SA v3.0.0, depends on BEAST.base 2.8.0 - Update example XMLs (TreeHeightLogger -> TreeStatLogger) - Remove obsolete examples using deleted classes (Flu.xml, fossil.xml) - bears.xml validated and runs successfully
Move fxtemplates/FBD.xml to beast-sampled-ancestors-fx/src/main/resources/ sa.fx/fxtemplates/ for JPMS module-namespaced resource loading. Update assembly descriptor. Add release profile for Maven Central publishing.
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Summary
Test plan
./release.shbuilds the package ZIP successfully