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Fix Misspellings #111

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Fix Misspellings #111

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4 changes: 2 additions & 2 deletions app/common.py
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Original file line number Diff line number Diff line change
Expand Up @@ -133,7 +133,7 @@ def key_func(k):
return k['CHROMOSOME']['RefSeq']


def is_overlaping(a, b):
def is_overlapping(a, b):
if b['RANGE']['L'] >= a['RANGE']['L'] and b['RANGE']['L'] <= a['RANGE']['H']:
return True
else:
Expand All @@ -148,7 +148,7 @@ def merge(arr):
for i in range(1, len(arr)):
pop_element = merged_list.pop()

if is_overlaping(pop_element, arr[i]):
if is_overlapping(pop_element, arr[i]):
pop_element['RANGE']['H'] = max(pop_element['RANGE']['H'], arr[i]['RANGE']['H'])
merged_list.append(pop_element)
else:
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4 changes: 2 additions & 2 deletions genomics-apps/data/product.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -478,7 +478,7 @@
"2670","Codeine","756277","Chlorpheniramine 0.4 MG/ML / Codeine 2 MG/ML / iodinated glycerol 3 MG/ML Oral Solution","SCD"
"2670","Codeine","1113064","Chlorcyclizine hydrochloride 5 MG/ML / Codeine Phosphate 2 MG/ML / Phenylephrine Hydrochloride 2 MG/ML Oral Solution [Nasotuss]","SBD"
"2670","Codeine","313927","Chlorpheniramine 0.4 MG/ML / Codeine 2 MG/ML / Phenylephrine 2 MG/ML Oral Solution","SCD"
"2670","Codeine","1242558","Chlorcyclizine hydrochloride 2.5 MG/ML / Codeine Phosphate 1.8 MG/ML / Pseudoephedrine Hydrochloride 6 MG/ML Oral Solution [Statuss Green Reformulated Jan 2012]","SBD"
"2670","Codeine","1242558","Chlorcyclizine hydrochloride 2.5 MG/ML / Codeine Phosphate 1.8 MG/ML / Pseudoephedrine Hydrochloride 6 MG/ML Oral Solution [Status Green Reformulated Jan 2012]","SBD"
"2670","Codeine","1235862","Chlorcyclizine hydrochloride 2.5 MG/ML / Codeine Phosphate 1.8 MG/ML / Pseudoephedrine Hydrochloride 6 MG/ML Oral Solution","SCD"
"2670","Codeine","1113053","Chlorcyclizine hydrochloride 1.88 MG/ML / Codeine Phosphate 2 MG/ML Oral Solution [Notuss-NX]","SBD"
"2670","Codeine","1113051","Chlorcyclizine hydrochloride 1.88 MG/ML / Codeine Phosphate 2 MG/ML Oral Solution","SCD"
Expand Down Expand Up @@ -661,7 +661,7 @@
"2670","Codeine","995485","Codeine Phosphate 2 MG/ML / Guaifenesin 40 MG/ML Oral Solution [Tusso C]","SBD"
"2670","Codeine","996650","Codeine Phosphate 2 MG/ML / Pseudoephedrine Hydrochloride 6 MG/ML / Triprolidine Hydrochloride 0.25 MG/ML Oral Solution [Triacin C]","SBD"
"2670","Codeine","996514","Codeine Phosphate 2 MG/ML / Guaifenesin 60 MG/ML Oral Solution [Tussi Organidin]","SBD"
"2670","Codeine","996546","Codeine Phosphate 2 MG/ML / Guaifenesin 40 MG/ML / Phenylpropanolamine 2.5 MG/ML Oral Solution [Statuss]","SBD"
"2670","Codeine","996546","Codeine Phosphate 2 MG/ML / Guaifenesin 40 MG/ML / Phenylpropanolamine 2.5 MG/ML Oral Solution [Status]","SBD"
"2670","Codeine","582337","Codeine Phosphate 2 MG/ML / Guaifenesin 20 MG/ML Oral Solution [Guaitussin AC]","SBD"
"2670","Codeine","995932","Codeine Phosphate 2 MG/ML / Guaifenesin 20 MG/ML Oral Solution [Brontex]","SBD"
"2670","Codeine","995956","Codeine Phosphate 2 MG/ML / Guaifenesin 20 MG/ML Oral Solution [Cheracol with Codeine]","SBD"
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6 changes: 3 additions & 3 deletions genomics-apps/getVariants.py
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Expand Up @@ -79,7 +79,7 @@ def findSubjectHaplotypes(subject, geneId):
"Genotype": genotype,
"Allelic State": allelicState,
"Copy Number": copyNumber,
"Allele Frequeny": alleleFreq})
"Allele Frequency": alleleFreq})
# get and parse structural variants
response = findSubjectStructuralIntersectingVariants(subject, range)
if response.status_code == 200:
Expand Down Expand Up @@ -112,7 +112,7 @@ def findSubjectHaplotypes(subject, geneId):
"Genotype": genotype,
"Allelic State": allelicState,
"Copy Number": copyNumber,
"Allele Frequeny": alleleFreq})
"Allele Frequency": alleleFreq})
# get and parse haplotypes
response = findSubjectHaplotypes(subject, geneId)
if response.status_code == 200:
Expand All @@ -130,7 +130,7 @@ def findSubjectHaplotypes(subject, geneId):
"Genotype": genotype,
"Allelic State": allelicState,
"Copy Number": copyNumber,
"Allele Frequeny": alleleFreq})
"Allele Frequency": alleleFreq})

data = (pd.DataFrame(variantList))
AgGrid(data, enable_enterprise_modules=True, update_mode="value_changed", allow_unsafe_jscode=True)
Expand Down
2 changes: 1 addition & 1 deletion genomics-apps/simpleApp.py
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Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,7 @@ def findSubjectVariants(subject, range):
SPDI = k["valueCodeableConcept"]["coding"][0]["display"]
elif k["code"]["coding"][0]["code"] == "81258-6":
alleleFreq = k["valueQuantity"]["value"]
variantList.append({"SPDI": SPDI, "Source Class": sourceClass, "Allelic State": allelicState, "Allele Frequeny": alleleFreq})
variantList.append({"SPDI": SPDI, "Source Class": sourceClass, "Allelic State": allelicState, "Allele Frequency": alleleFreq})
data = (pd.DataFrame(variantList))
with col2:
AgGrid(data, enable_enterprise_modules=True, update_mode="value_changed", allow_unsafe_jscode=True)
Expand Down
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