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Remove solid species in the stoichiometric matrix for Ultramafics #15

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Remove solid species in the stoichiometric matrix for Ultramafics #15

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29 changes: 27 additions & 2 deletions src/reactions/geochemistry/Ultramafics.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -50,6 +50,31 @@ constexpr CArrayWrapper<double, 21, 25> stoichMatrix =
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, -2, 0, 1, 0 } // Mg(OH)2 + 2H+ = Mg++ + 2H2O
};

constexpr CArrayWrapper<double, 21, 20> stoichMatrixNosolid =
{ // OH- CO2(aq) CO3-- Mg2OH+++ Mg4(OH)++++ MgOH+ Mg2CO3++ MgCO3(aq) MgHCO3+ Mg(H3SiO4)2 MgH2SiO4 MgH3SiO4+ H2SiO4-- H3SiO4- H4(H2SiO4)---- H6(H2SiO4)-- H+ HCO3- Mg++ SiO2(aq)
{ -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0 }, // OH- + H+ = H2O
{ 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0 }, // CO2(aq) + H2O = HCO3- + H+
{ 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0 }, // CO3-- + H+ = HCO3-
{ 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 2, 0 }, // Mg2OH+++ + H+ = 2Mg++ + H2O
{ 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -4, 0, 4, 0 }, // Mg4(OH)++++ + 4H+ = 4Mg++ + 4H2O
{ 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 1, 0 }, // MgOH+ + H+ = Mg++ + H2O
{ 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 2, 0 }, // Mg2CO3++ + H+ = 2Mg++ + HCO3-
{ 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 1, 0 }, // MgCO3 + H+ = Mg++ + HCO3-
{ 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0 }, // MgHCO3+ = Mg++ + HCO3-
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, -2, 0, 1, 1 }, // Mg(H3SiO4)2 + 2H+ = Mg++ + SiO2(aq) + 4H2O
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, -2, 0, 1, 1 }, // MgH2SiO4 + 2H+ = Mg++ + SiO2(aq) + 2H2O
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, -1, 0, 1, 1 }, // MgH3SiO4+ + H+ = Mg++ + SiO2(aq) + 2H2O
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, -2, 0, 0, 1 }, // H2SiO4-- + 2H+ = SiO2(aq) + 2H2O
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, -1, 0, 0, 1 }, // H3SiO4- + H+ = SiO2(aq) + 2H2O
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, -4, 0, 0, 4 }, // H4(H2SiO4)---- + 4H+ = 4SiO2(aq) + 8H2O
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, -2, 0, 0, 4 }, // H6(H2SiO4)-- + 2H+ = 4SiO2 + 8H2O
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -4, 0, 2, 1 }, // Mg2SiO4 + 4H+ = 2Mg++ + SiO2(aq) + 2H2O
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 1, 0 }, // MgCO3 + H+ = Mg++ + HCO3-
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1 }, // SiO2 = SiO2(aq)
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -6, 0, 3, 2 }, // Mg3Si2O5(OH)4 + 6H+ = 3Mg++ + 2SiO2(aq) + 5H2O
{ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 1, 0 } // Mg(OH)2 + 2H+ = Mg++ + 2H2O
};

// 2Mg2SiO4 + 3H2O → Mg3Si2O5(OH)4 + Mg(OH)2 Serpentinization reaction

constexpr CArrayWrapper<double, 21> equilibriumConstants =
Expand Down Expand Up @@ -155,11 +180,11 @@ constexpr CArrayWrapper<int, 21> mobileSpeciesFlag =

using ultramaficSystemAllKineticType = reactionsSystems::MixedReactionsParameters< double, int, int, 25, 21, 0 >;
using ultramaficSystemAllEquilibriumType = reactionsSystems::MixedReactionsParameters< double, int, int, 25, 21, 21 >;
using ultramaficSystemType = reactionsSystems::MixedReactionsParameters< double, int, int, 25, 21, 16 >;
using ultramaficSystemType = reactionsSystems::MixedReactionsParameters< double, int, int, 20, 21, 16 >;

constexpr ultramaficSystemAllKineticType ultramaficSystemAllKinetic( ultramafics::stoichMatrix, ultramafics::equilibriumConstants, ultramafics::forwardRates, ultramafics::reverseRates, ultramafics::mobileSpeciesFlag );
constexpr ultramaficSystemAllEquilibriumType ultramaficSystemAllEquilibrium( ultramafics::stoichMatrix, ultramafics::equilibriumConstants, ultramafics::forwardRates, ultramafics::reverseRates, ultramafics::mobileSpeciesFlag );
constexpr ultramaficSystemType ultramaficSystem( ultramafics::stoichMatrix, ultramafics::equilibriumConstants, ultramafics::forwardRates, ultramafics::reverseRates, ultramafics::mobileSpeciesFlag );
constexpr ultramaficSystemType ultramaficSystem( ultramafics::stoichMatrixNosolid, ultramafics::equilibriumConstants, ultramafics::forwardRates, ultramafics::reverseRates, ultramafics::mobileSpeciesFlag );

// *****UNCRUSTIFY-ON******
} // namespace geochemistry
Expand Down