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Gray Lab

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  1. DL4Proteins-notebooks DL4Proteins-notebooks Public

    Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook 566 91

  2. IgFold IgFold Public

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python 399 70

  3. IgLM IgLM Public

    Generative Language Modeling for Antibody Design

    Python 178 30

  4. FLAb FLAb Public

    Fitness landscapes for antibodies

    Python 132 20

  5. GeoDock GeoDock Public

    Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python 98 17

  6. AlphaRED AlphaRED Public

    AlphaFold-initiated replica exchange protein docking

    Python 87 17

Repositories

Showing 10 of 19 repositories
  • DL4Proteins-notebooks Public

    Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Graylab/DL4Proteins-notebooks’s past year of commit activity
    Jupyter Notebook 566 MIT 91 4 1 Updated Jan 13, 2026
  • AF2Dock Public
    Graylab/AF2Dock’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Jan 7, 2026
  • FLAb Public

    Fitness landscapes for antibodies

    Graylab/FLAb’s past year of commit activity
    Python 132 20 7 0 Updated Dec 23, 2025
  • DiffEnergy Public
    Graylab/DiffEnergy’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Dec 19, 2025
  • dockqc Public

    Benchmark of protein-carbohydrate interactions

    Graylab/dockqc’s past year of commit activity
    Python 0 2 0 0 Updated Sep 9, 2025
  • DFMDock Public

    DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.

    Graylab/DFMDock’s past year of commit activity
    Python 52 MIT 7 2 2 Updated Jul 22, 2025
  • picap Public

    CAPSIF2 and PiCAP

    Graylab/picap’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Jun 5, 2025
  • AlphaRED Public

    AlphaFold-initiated replica exchange protein docking

    Graylab/AlphaRED’s past year of commit activity
    Python 87 MIT 17 8 3 Updated Jun 5, 2025
  • MaskedProteinEnT Public
    Graylab/MaskedProteinEnT’s past year of commit activity
    Python 12 5 0 2 Updated Dec 2, 2024
  • IgLM Public

    Generative Language Modeling for Antibody Design

    Graylab/IgLM’s past year of commit activity
    Python 178 30 6 0 Updated Oct 5, 2024
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