JWarson/Aggregation_G.pulex
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This directory contains data and R script of an experiment on aggregation behavior in Gammarus pulex. In the script, two aggregation measures (inter-individual distance and nearest neighbor) are calculated based on X and Y pixel coördinates retrieved in ImageJ (FIJI) with MtrackJ plugin. A autocorrelation model was fitted from the resulting data and the effects were plotted using ggplot2. You can download the .zip file, extract the content to a single folder, open the R-script and everything should run out of the box. A shortend version requiring 'fullData.csv' and 'fullDataZoomed.csv' is also supplied.