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2d.Rmd
2d.Rmd
 
 
2danalysis.Rmd
2danalysis.Rmd
 
 
Alina_AllData_anlysis.R
Alina_AllData_anlysis.R
 
 
Alina_Analysis.Rmd
Alina_Analysis.Rmd
 
 
Alina_RNAseq.R
Alina_RNAseq.R
 
 
Alina_RNAseq_MYD88.R
Alina_RNAseq_MYD88.R
 
 
Alina_RNAseq_Paper.R
Alina_RNAseq_Paper.R
 
 
BL6LeftvsRight.Rmd
BL6LeftvsRight.Rmd
 
 
BL6TopvsDown.Rmd
BL6TopvsDown.Rmd
 
 
BamToCountMatrix.Rmd
BamToCountMatrix.Rmd
 
 
BamstoCountMatrixviaFeatureCounts.Rmd
BamstoCountMatrixviaFeatureCounts.Rmd
 
 
BioNERO.R
BioNERO.R
 
 
CPMValues_script.R
CPMValues_script.R
 
 
Comments on Low Level analysis RNAseq.txt
Comments on Low Level analysis RNAseq.txt
 
 
DGE.Rmd
DGE.Rmd
 
 
DGE_755vsHI.Rmd
DGE_755vsHI.Rmd
 
 
DGE_755vsLI.Rmd
DGE_755vsLI.Rmd
 
 
DGE_Alina.Rmd
DGE_Alina.Rmd
 
 
DGE_BL6vsCaspace.Rmd
DGE_BL6vsCaspace.Rmd
 
 
DGE_Bl6vsMyD88.Rmd
DGE_Bl6vsMyD88.Rmd
 
 
DGE_ER.Rmd
DGE_ER.Rmd
 
 
DGE_Epithelial.Rmd
DGE_Epithelial.Rmd
 
 
DGE_Microcolonies.Rmd
DGE_Microcolonies.Rmd
 
 
DGE_multi.Rmd
DGE_multi.Rmd
 
 
Ideas.Rmd
Ideas.Rmd
 
 
L2FC_script_forDEDOWNGenes.R
L2FC_script_forDEDOWNGenes.R
 
 
L2FC_script_forDEGenes.R
L2FC_script_forDEGenes.R
 
 
L2fc.Rmd
L2fc.Rmd
 
 
METABRIC_RNA_Mutation.csv
METABRIC_RNA_Mutation.csv
 
 
MyD88_DGE.Rmd
MyD88_DGE.Rmd
 
 
NB1_alina.Rmd
NB1_alina.Rmd
 
 
NB2_alina.Rmd
NB2_alina.Rmd
 
 
NB2_alina_heatmaps_geneexp.Rmd
NB2_alina_heatmaps_geneexp.Rmd
 
 
NB3_alina.Rmd
NB3_alina.Rmd
 
 
README.md
README.md
 
 
Week3-IntroToR.R
Week3-IntroToR.R
 
 
allStrains_PresentAbsent_effectorlist_forKeshav.xlsx
allStrains_PresentAbsent_effectorlist_forKeshav.xlsx
 
 
bashcmd.sh
bashcmd.sh
 
 
featurecounts&DGE.Rmd
featurecounts&DGE.Rmd
 
 
featurecounts_individual.Rmd
featurecounts_individual.Rmd
 
 
mixture.Rmd
mixture.Rmd
 
 
newcounts.csv
newcounts.csv
 
 
results.csv
results.csv
 
 
samples.csv
samples.csv
 
 
starbash.sh
starbash.sh
 
 
test2.Rmd
test2.Rmd
 
 
wgcna.Rmd
wgcna.Rmd
 
 

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AZB_DataAnalysis

Data Analysis of AZB from her PhD work to compare 13 different strains.

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Data Analysis of AZB from her PhD work to compare 13 different strains.

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