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c8b2b00
DOC-483: Documenting CNV segment API
ebusygina May 14, 2025
cc5b422
Minor fixes and changed one of the examples to tsv format
ebusygina May 15, 2025
51a1180
DOC-490: part 1. Fixing reference in-docs links
ebusygina May 15, 2025
324baaa
Merge pull request #494 from NCI-GDC/evgeniia_DOC-483
ebusygina May 15, 2025
cec4389
DOC-490, part 2: Removed broken links from the TCGA_VCF_1.1v2 documen…
ebusygina May 15, 2025
848b0ea
Addressing comments
ebusygina May 19, 2025
5ae291c
DOC-490, part 3: Fixing the hierarchy of the headers/subheaders
ebusygina May 19, 2025
a6efe4d
remove outlinks
May 19, 2025
b35c8fb
remove links, fix text
May 19, 2025
2d32158
Fixing hierarchy of Data Submission Walkthrough and TCGA_VCF_1.1v2
ebusygina May 19, 2025
30560bd
Slight change of hierarchy for the Data_Submission_Walkthrough file
ebusygina May 20, 2025
c4948c9
Sanger minus API release notes
wwysoc2 May 20, 2025
fe2a51e
Removed DTT-UI docs as it was removed for download from gdc.cancer.gov
wwysoc2 May 20, 2025
72a8ee2
Merge pull request #495 from NCI-GDC/evgeniia_DOC-490
ebusygina May 20, 2025
9f642b2
fixed version link
wwysoc2 May 20, 2025
9da6cb2
Merge pull request #497 from NCI-GDC/sanger-minus-release
wwysoc2 May 20, 2025
19fa561
Merge pull request #498 from NCI-GDC/develop
wwysoc2 May 20, 2025
0972c17
template for sanger release notes
wteouchicago May 29, 2025
f7d6959
Merge pull request #499 from NCI-GDC/sanger_release_notes_template
wteouchicago May 30, 2025
e270948
user guide updates for sanger
wteouchicago May 30, 2025
661a2db
removed dtt ui related pages from search
wteouchicago May 30, 2025
dfecb3f
fix broken image links
May 31, 2025
f9796d5
updates cnv tool link
wteouchicago Jun 2, 2025
c290f27
Merge pull request #500 from NCI-GDC/sanger-user-guide-updates
wteouchicago Jun 2, 2025
eb49575
moves v1 and dtt ui pages to Archive folder
wteouchicago Jun 2, 2025
872d52e
added user guide for cnv tool
May 31, 2025
67fa0d0
sanger release notes draft for UC.
wteouchicago Jun 3, 2025
19e81b6
typo fixes per PR comments
wteouchicago Jun 3, 2025
f273b3f
tweaks based on PR comments
wteouchicago Jun 3, 2025
5a95d48
DOC-495: Updated /segment_cnvs description
ebusygina Jun 3, 2025
970ef25
removes curly quotes
wteouchicago Jun 4, 2025
691e37a
Merge pull request #503 from NCI-GDC/sanger_release_notes_draft1
wteouchicago Jun 4, 2025
af11d96
moved the Segment CNV description from the table to the examples sect…
ebusygina Jun 4, 2025
91e4d0a
Merge pull request #504 from NCI-GDC/evgeniia_DOC-495
ebusygina Jun 4, 2025
68a79e3
rename CNV Tool to Copy Number Segment Tool
siosonel Jun 5, 2025
f4926fc
Merge pull request #502 from NCI-GDC/cnv-user-guide
siosonel Jun 5, 2025
ce29e13
Add release notes for the ProteinPaint-based tool updates and fixes
siosonel Jun 5, 2025
ef7f0ce
Added CVNtools to yml files
zhangm-02 Jun 5, 2025
76496ef
Fixed tool name and removed extra i
zhangm-02 Jun 5, 2025
e92870b
removes files already copied to Archive
wteouchicago Jun 5, 2025
38ba8d7
Add missing period to Copy Number Segment release note
siosonel Jun 5, 2025
ffe415f
Merge pull request #507 from zhangm-02/CNVtool_addition_496
zhangm-02 Jun 6, 2025
7b9c83f
remove reference to a removed screen recording
siosonel Jun 8, 2025
2cbd529
Merge pull request #485 from NCI-GDC/user_guide_sanger_release2
siosonel Jun 8, 2025
b363d24
Merge pull request #505 from NCI-GDC/sanger-pp-release-notes
siosonel Jun 11, 2025
61d5450
updates broken links
wteouchicago Jun 13, 2025
96a37f3
Added updated release notes
wwysoc2 Jun 17, 2025
d59a89a
Changed submission portal version
wwysoc2 Jun 17, 2025
f09e4cb
updates sanger release date
wteouchicago Jun 18, 2025
759df0b
changed release date
wwysoc2 Jun 26, 2025
905ebfc
updates release date
wteouchicago Jun 26, 2025
235f57f
Merge pull request #509 from NCI-GDC/DOC-297_fix_links
wteouchicago Jun 26, 2025
cd79be6
GEC branch re-do
wwysoc2 Jun 26, 2025
78a18f8
remove hash links
Jun 26, 2025
f9a557f
update link for image
Jun 27, 2025
50a6798
update all links
Jun 27, 2025
8f7327a
Merge pull request #501 from NCI-GDC/remove_dtt_ui_refs
wwysoc2 Jun 27, 2025
98a8c33
updates release date again
wteouchicago Jun 27, 2025
a67319a
Merge pull request #510 from NCI-GDC/DOC-498-SUBP-Version
wwysoc2 Jun 27, 2025
142fd79
Merge pull request #511 from NCI-GDC/sanger_release_notes_final
wteouchicago Jun 30, 2025
5c6a377
minor corrections
wwysoc2 Jun 30, 2025
b30c4d9
removed quote
wwysoc2 Jun 30, 2025
30ce5a6
Merge pull request #513 from NCI-GDC/new-gec-branch
wwysoc2 Jun 30, 2025
5a1dfd0
date change
wwysoc2 Jun 30, 2025
35ff7df
date change 2
wwysoc2 Jun 30, 2025
90920c5
Merge pull request #515 from NCI-GDC/submission-sanger-date
clsackett Jun 30, 2025
76230da
add known issues for ProteinPaint-based tools in Sanger release notes
siosonel Jun 30, 2025
bd23ab0
adjusts wording
wteouchicago Jun 30, 2025
4ab7c44
Fixing encoding issues
clsackett Jun 30, 2025
9a21e18
Merge pull request #517 from NCI-GDC/fix-encoding-errors
clsackett Jun 30, 2025
bca1600
Merge pull request #516 from NCI-GDC/pp-sanger-known-issues
siosonel Jun 30, 2025
ca18cff
adds precommit hooks for detecting curly quotes and non-ascii chars
wteouchicago Jul 1, 2025
4fe1c86
Update Data_Dictionary_Release_Notes.md
zhangm-02 Jul 21, 2025
b5e1b73
Merge pull request #519 from NCI-GDC/DOC-499_add_precommit_hooks
wwysoc2 Jul 21, 2025
2734e2c
Update Data_Dictionary_Release_Notes.md
zhangm-02 Jul 22, 2025
b192fd6
Update Data_Dictionary_Release_Notes.md
zhangm-02 Jul 22, 2025
fef72ad
Update Data_Dictionary_Release_Notes.md
zhangm-02 Jul 22, 2025
a5bfaee
Update Data_Dictionary_Release_Notes.md
zhangm-02 Jul 22, 2025
d7d2cd5
Update Data_Dictionary_Release_Notes.md
zhangm-02 Jul 23, 2025
0d969c9
Update Data_Dictionary_Release_Notes.md
zhangm-02 Jul 23, 2025
a215cdf
Update Data_Dictionary_Release_Notes.md
zhangm-02 Jul 23, 2025
17e652b
Changes to dictionary release notes
wwysoc2 Jul 23, 2025
5eed0f1
PEAR-2395 - remove deprecated properties for array type fields
amlehman Jul 29, 2025
2fa8566
PEAR-2415 - fix d3 error
amlehman Jul 30, 2025
914f1af
PEAR-2481 - fix style not accepting object in recent d3 version
amlehman Jul 30, 2025
8552469
Update Data_Dictionary_Release_Notes.md
clsackett Jul 31, 2025
f242381
Merge pull request #520 from NCI-GDC/zhangm02-dict-notes-v3.4-update
clsackett Jul 31, 2025
464d323
Update Data_Dictionary_Release_Notes.md
zhangm-02 Aug 4, 2025
75439bb
Update Data_Dictionary_Release_Notes.md
zhangm-02 Aug 4, 2025
ca73e08
Update Data_Dictionary_Release_Notes.md
zhangm-02 Aug 4, 2025
ecd884b
Merge pull request #526 from NCI-GDC/zhangm-02-patch-1
zhangm-02 Aug 4, 2025
8123bd6
Merge pull request #521 from NCI-GDC/PEAR-2395-deprecated-enums
wteouchicago Aug 8, 2025
460eda7
Merge pull request #522 from NCI-GDC/PEAR-2415-node-not-loading
wteouchicago Aug 8, 2025
8dfb7f9
Merge pull request #523 from NCI-GDC/PEAR-2481-return-of-the-breadcrumbs
wteouchicago Aug 8, 2025
d08679c
Added release notes and file list
wwysoc2 Aug 18, 2025
15f3748
Merge pull request #530 from NCI-GDC/mut2_info
wwysoc2 Aug 19, 2025
3eb01e5
changed file suffix to correct one
wwysoc2 Aug 19, 2025
17fb393
Merge pull request #531 from NCI-GDC/mut2_info
clsackett Aug 19, 2025
f201b7c
Added scRNA Tool
wwysoc2 Sep 11, 2025
25df686
Removed extra line
wwysoc2 Sep 11, 2025
adac1a1
Merge pull request #533 from NCI-GDC/new_yt
wwysoc2 Sep 11, 2025
cbf4dc9
Embed link
wwysoc2 Sep 11, 2025
731c18e
Merge pull request #534 from NCI-GDC/new_yt
wwysoc2 Sep 11, 2025
7f18212
removed old files from search, skips false positives for detect secrets
wteouchicago Sep 15, 2025
64231e5
DOC-488: Updating outdated links
ebusygina Sep 20, 2025
1456567
DOC-488 fixes
ebusygina Sep 23, 2025
81bbb7f
fixed typo
ebusygina Oct 9, 2025
bc0bf90
changed the link for the CDE Browser
ebusygina Oct 10, 2025
0116e13
Merge pull request #537 from NCI-GDC/evgeniia_DOC-488_update_outdated…
ebusygina Oct 10, 2025
c71a550
DR 44 release notes commit
wwysoc2 Oct 28, 2025
fd0c53d
Added GATK4 manifest
wwysoc2 Oct 28, 2025
f4371e1
Added data changes
wwysoc2 Oct 28, 2025
8aeaf24
Added manifest files to page.
wwysoc2 Oct 28, 2025
ecc8fa3
Added header to TSV file
wwysoc2 Oct 28, 2025
cd7cd00
updates copyright year
wteouchicago Oct 28, 2025
6e44096
Merge pull request #539 from NCI-GDC/update_copyright_year
wwysoc2 Oct 29, 2025
5a005fc
Merge pull request #538 from NCI-GDC/dr44-rns
wwysoc2 Oct 29, 2025
97306b7
Merge pull request #535 from NCI-GDC/DOC-503_move_page_to_archive
wwysoc2 Oct 29, 2025
a6dc1c2
Mistake with experimental strategy
wwysoc2 Oct 29, 2025
3925b98
Merge pull request #541 from NCI-GDC/dr44-rns
wwysoc2 Oct 29, 2025
a42beee
Added correct IDs
wwysoc2 Nov 3, 2025
8052549
Merge pull request #543 from NCI-GDC/dr44_manifest_fix
wwysoc2 Nov 3, 2025
8e91172
Slide Image correction
wwysoc2 Nov 5, 2025
d199856
Merge pull request #545 from NCI-GDC/dr44-rn-correction
wwysoc2 Nov 5, 2025
faad982
DOC-507 properly hide old docs from view
wteouchicago Nov 6, 2025
598bae8
DOC-494 adds section on Annotations Browser to Quick Start
wteouchicago Nov 6, 2025
eb9595b
adds link to encyclopedia entry on annotations
wteouchicago Nov 6, 2025
73b0ebf
updates encyclopedia page
wteouchicago Nov 6, 2025
1aad209
Merge pull request #548 from NCI-GDC/DOC-494_add_annotations_browser_…
wwysoc2 Nov 7, 2025
e90ca47
DOC-281: Encyclopedia TCGA_Barcode table fix
ebusygina Nov 11, 2025
9fe93ed
DOC-119: added excludeifany desc to API docs
ebusygina Nov 12, 2025
7dcb1ec
Updated excludeifany API operator description
ebusygina Nov 12, 2025
3259e23
updated exclude and excludeifany API operators description and added …
ebusygina Nov 13, 2025
84162f3
Added links to Code Tables Report
ebusygina Nov 13, 2025
f7b4fc2
Fixed typo in the Barcode Types table header
ebusygina Nov 13, 2025
8d4ac55
Merge pull request #549 from NCI-GDC/evgeniia_DOC-281_Encyclopedia_TC…
ebusygina Nov 13, 2025
bfbf807
Changed the example description according to Wendy's comment
ebusygina Nov 13, 2025
8eb06d3
Merge pull request #550 from NCI-GDC/evgeniia_DOC-119_excludeifany_ap…
ebusygina Nov 14, 2025
0280b66
DOC-480: Update the One_Consequence definition in the MAF Format docu…
ebusygina Nov 24, 2025
2cca657
Merge pull request #551 from NCI-GDC/evgeniia_DOC-480_One_Consequence…
ebusygina Nov 25, 2025
ac1bfcc
First draft release notes
wwysoc2 Nov 25, 2025
6c90761
Added ALCHEMIST treatment arm lists
wwysoc2 Nov 25, 2025
f670b32
Merge pull request #547 from NCI-GDC/DOC-507_properly_remove_old_pages
wteouchicago Dec 2, 2025
8a51584
Removed extra info and case lists
wwysoc2 Dec 3, 2025
72e91c4
Added manifest links
wwysoc2 Dec 4, 2025
b0fe3fa
Added line about added HCMI case
wwysoc2 Dec 4, 2025
ea661a7
Merge pull request #552 from NCI-GDC/DR45-notes
wwysoc2 Dec 4, 2025
26f8178
Changed source of survival info
wwysoc2 Dec 16, 2025
c18bca2
Copyright year
wwysoc2 Jan 5, 2026
a79b7e2
Merge pull request #555 from NCI-GDC/2026-CR
wwysoc2 Jan 5, 2026
9a07192
DOC-278 issues addressed for pp BAM tool
xzhou82 Jan 6, 2026
928c281
revise proteinpaint lollipop tutorial to delete use of "gender", add …
xzhou82 Jan 7, 2026
96d1077
restore table-of-content by not using # in the rest of a doc
xzhou82 Jan 7, 2026
aa00d0a
resolve issues in scRNA doc
xzhou82 Jan 7, 2026
025010e
template for uhlenbeck release notes
wteouchicago Jan 7, 2026
7944ce9
removes some extra spaces and empty lines
wteouchicago Jan 7, 2026
b50e861
Merge pull request #557 from NCI-GDC/Uhlenbeck_portal_release_notes_t…
wteouchicago Jan 7, 2026
279f3c8
Merge pull request #554 from NCI-GDC/fix/DOC509
wwysoc2 Jan 13, 2026
281a661
Added clarification about WGS VCFs to data release notes.
wwysoc2 Jan 14, 2026
6253182
Merge pull request #558 from NCI-GDC/vcf-release-notes
wwysoc2 Jan 14, 2026
7f5b41d
DOC-481: Update Portal developer guide documentation text for gender-…
ebusygina Jan 15, 2026
8f2dbda
DOC-481: Update gender-to-sex screenshot in the Portal developer guide
ebusygina Jan 15, 2026
7a9ba99
Revert "Uhlenbeck portal release notes template"
wteouchicago Jan 15, 2026
0419f9d
Merge pull request #560 from NCI-GDC/revert-557-Uhlenbeck_portal_rele…
wwysoc2 Jan 15, 2026
a266ade
Revert "Revert "Uhlenbeck portal release notes template""
wteouchicago Jan 15, 2026
dae9445
Merge pull request #562 from NCI-GDC/revert-560-revert-557-Uhlenbeck_…
wteouchicago Jan 15, 2026
fdd29c7
Merge pull request #559 from NCI-GDC/evgeniia_DOC-481_gender-to-sex_d…
ebusygina Jan 15, 2026
769ef5e
draft uhlenbeck submission portal notes
wteouchicago Jan 16, 2026
936ddcd
DOC-512: Uhlenbeck API Release Notes
ebusygina Jan 21, 2026
9304f1f
Update docs/Data_Submission_Portal/Release_Notes/Data_Submission_Port…
wteouchicago Jan 23, 2026
1f9d09c
Removed the DEV-3822 part as it's an internal change and doesn't affe…
ebusygina Jan 23, 2026
7bd8c14
first draft of uhlenbeck portal release notes
wteouchicago Jan 24, 2026
3f62ac4
DOC-508 adds removed properties
wteouchicago Jan 26, 2026
7be9e25
DOC-512 document quick search limitation
wteouchicago Jan 26, 2026
8a63bf5
minor adjustments
wteouchicago Jan 26, 2026
cfd388d
link fix
wteouchicago Jan 26, 2026
8301ab0
removes extra period
wteouchicago Jan 26, 2026
c757eab
more colloquial english
wteouchicago Jan 26, 2026
d3fc3c7
changes per review
wteouchicago Jan 26, 2026
90a3aec
updates UC data portal docs for uhlenbeck, also replaces gender with …
wteouchicago Jan 27, 2026
df53534
updates tutorial page
wteouchicago Jan 27, 2026
c5152c0
Update docs/Data_Portal/Users_Guide/Repository.md
wteouchicago Jan 27, 2026
ee2bf63
Update docs/Data_Portal/Users_Guide/Video_Tutorials.md
wteouchicago Jan 27, 2026
85d1352
removes extra space
wteouchicago Jan 27, 2026
f4ed2a6
Merge pull request #566 from NCI-GDC/uhlenbeck_portal_docs_updates
wteouchicago Jan 27, 2026
0e8da4d
fix issues
xzhou82 Jan 28, 2026
d0995a6
accept smartquote changes
xzhou82 Jan 28, 2026
6570da2
Removed the DEV-3601 part as it's an internal change and doesn't affe…
ebusygina Jan 28, 2026
4710f0f
Update description for DEV-3756
ebusygina Jan 28, 2026
874cfe8
accept editing comments
xzhou82 Jan 28, 2026
f09a721
replaces gender with sex_at_birth, available fields updates
wteouchicago Jan 28, 2026
af909fb
PR comments; fix bug
wteouchicago Jan 29, 2026
640862f
Merge pull request #565 from NCI-GDC/uhlenbeck_portal_release_notes_1
wteouchicago Jan 29, 2026
ee5aadd
Merge pull request #567 from NCI-GDC/gender_updates_for_api_docs
wteouchicago Jan 29, 2026
e9a7ab4
DOC-514 adds correlation plot page
wteouchicago Feb 4, 2026
7fc9842
Merge pull request #563 from NCI-GDC/uhlenbeck_submission_portal_rele…
wwysoc2 Feb 20, 2026
6bb341e
Add a link to the Data Portal release notes for the removed properties
ebusygina Feb 20, 2026
7fad404
Merge pull request #564 from NCI-GDC/evgeniia_DOC-512_API_Release_Not…
wwysoc2 Feb 20, 2026
8fd2893
tentative dates for uhlenbeck releases
wteouchicago Feb 23, 2026
d168d79
Add PP release notes for Uhlenbeck
siosonel Feb 26, 2026
e50fa13
fix indentations and typos/grammatical errors, and clarify issue/bug …
siosonel Mar 11, 2026
536e22d
add new known issues for SJ tools
siosonel Mar 11, 2026
980af37
Updating Repository.md
zhangm-02 Mar 12, 2026
8592529
Merge pull request #574 from zhangm-02/develop
zhangm-02 Mar 12, 2026
304bd48
fix the indentation for the correlation plot entry
siosonel Mar 12, 2026
4c20cd4
Merge pull request #571 from NCI-GDC/pp-release-notes-uhlenbeck
wwysoc2 Mar 12, 2026
73f11fa
updates uhlenbeck release dates
wteouchicago Mar 12, 2026
1ae3442
address comment
xzhou82 Mar 13, 2026
e09d626
Merge pull request #575 from NCI-GDC/final_uhlenbeck_dates_update
wwysoc2 Mar 16, 2026
2eca537
Merge pull request #556 from NCI-GDC/pp.tutorial.revision
wwysoc2 Mar 16, 2026
6265ecb
Merge pull request #568 from NCI-GDC/add_correlation_plot_links
wteouchicago Mar 16, 2026
5328acc
minor fixes
wteouchicago Mar 16, 2026
8a9b93c
Merge pull request #576 from NCI-GDC/minor_fixes_uhlenbeck
wwysoc2 Mar 16, 2026
76b44a7
Added survival analysis known issue
wwysoc2 Mar 25, 2026
11b0385
Added more details to the release notes and to the API release notes
wwysoc2 Mar 26, 2026
66a3dac
Merge pull request #578 from NCI-GDC/survival_notes
wwysoc2 Mar 26, 2026
62ebaab
Moved survival issue to survival plot section
wwysoc2 Mar 26, 2026
80cd2f6
Merge pull request #579 from NCI-GDC/survival_notes
wwysoc2 Mar 26, 2026
6fe884d
release notes template for Vinci release
wwysoc2 Apr 21, 2026
9bc7ac8
Merge pull request #581 from NCI-GDC/vinci-rns
wwysoc2 Apr 21, 2026
1781dad
update PP features, bugs fixes, and known issues for Vinci release
siosonel Apr 21, 2026
8464178
update sv ticket number for gene expression clustering issue of no ma…
siosonel Apr 21, 2026
e6d93e7
Draft IDC viewer tutorial.
aacic Apr 21, 2026
1e2ac01
Add known issues for IDC Image Viewer tool and another issue for Corr…
siosonel Apr 22, 2026
7548add
Add IDC viewer desc.
aacic Apr 23, 2026
ed35d05
Reformat text.
aacic Apr 23, 2026
d7ef325
Change multiple studies image.
aacic Apr 23, 2026
04bf695
Change text.
aacic Apr 23, 2026
55312af
adds IDC Image Viewer docs
wteouchicago Apr 23, 2026
8492ea1
UC vinci release notes
wteouchicago Apr 24, 2026
04ab233
Merge pull request #585 from NCI-GDC/vinci_uc_release_notes
wteouchicago Apr 24, 2026
f9dfee6
DOC-518 removes era commons ids from screenshots and text
wteouchicago Apr 24, 2026
9d24b63
Remove IDC viewer links.
aacic Apr 27, 2026
7b9cae0
Merge pull request #583 from NCI-GDC/idc-viewer-user-guide
wwysoc2 Apr 27, 2026
fc0139d
clarify wording of known issues and bug fixes for PP tools
siosonel Apr 27, 2026
d554571
Merge remote-tracking branch 'origin/develop' into pp-vinci-release-n…
siosonel Apr 27, 2026
d78fdf8
Merge pull request #587 from NCI-GDC/add_idcviewer_docs
wwysoc2 Apr 27, 2026
4805d65
fix typo, grammar in Vinci PP release notes
siosonel Apr 27, 2026
c71b646
removes another era commons id from text and screenshot
wteouchicago Apr 27, 2026
97842b7
Merge pull request #586 from NCI-GDC/DOC-518_removes_era_commons_ids
wwysoc2 Apr 27, 2026
335bd6b
Merge pull request #582 from NCI-GDC/pp-vinci-release-notes
wwysoc2 Apr 27, 2026
2643acd
PEAR-2683 display treatment_type_administered values properly
wteouchicago May 15, 2026
68a2633
adds a check for array to be safer
wteouchicago May 15, 2026
f5426ce
properly remove log statements
wteouchicago May 15, 2026
60e54ae
removes blank line
wteouchicago May 15, 2026
3264616
adds closing list tag
wteouchicago May 18, 2026
05d5c00
removes unnecessary double evals, adds semicola
wteouchicago May 18, 2026
76a1640
properly remove extra eval
wteouchicago May 18, 2026
31bac96
removes another extraneous eval
wteouchicago May 18, 2026
f816f76
Merge pull request #589 from NCI-GDC/PEAR-2683_display_TTA_values_cor…
wteouchicago May 18, 2026
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5 changes: 4 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
@@ -1,3 +1,6 @@
site/
.DS_Store
venv/
.venv*/
venv*/
.vscode/
docs/*/PDF/*.pdf
20 changes: 20 additions & 0 deletions .pre-commit-config.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
---
repos:
- repo: git@github.com:Yelp/detect-secrets
rev: v1.5.0
hooks:
- id: detect-secrets
args: [--baseline, .secrets.baseline]
- repo: https://github.com/jumanjihouse/pre-commit-hook-yamlfmt
rev: 0.2.3
hooks:
- id: yamlfmt
args: [--mapping, '2', --sequence, '4', --offset, '2', --width, '80']
- repo: https://github.com/sirosen/texthooks
rev: 0.6.8
hooks:
- id: fix-smartquotes
- repo: https://github.com/jumanjihouse/pre-commit-hooks
rev: master
hooks:
- id: require-ascii
364 changes: 364 additions & 0 deletions .secrets.baseline
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{
"version": "1.5.0",
"plugins_used": [
{
"name": "ArtifactoryDetector"
},
{
"name": "AWSKeyDetector"
},
{
"name": "AzureStorageKeyDetector"
},
{
"name": "Base64HighEntropyString",
"limit": 4.5
},
{
"name": "BasicAuthDetector"
},
{
"name": "CloudantDetector"
},
{
"name": "DiscordBotTokenDetector"
},
{
"name": "GitHubTokenDetector"
},
{
"name": "GitLabTokenDetector"
},
{
"name": "HexHighEntropyString",
"limit": 3
},
{
"name": "IbmCloudIamDetector"
},
{
"name": "IbmCosHmacDetector"
},
{
"name": "IPPublicDetector"
},
{
"name": "JwtTokenDetector"
},
{
"name": "KeywordDetector",
"keyword_exclude": ""
},
{
"name": "MailchimpDetector"
},
{
"name": "NpmDetector"
},
{
"name": "OpenAIDetector"
},
{
"name": "PrivateKeyDetector"
},
{
"name": "PypiTokenDetector"
},
{
"name": "SendGridDetector"
},
{
"name": "SlackDetector"
},
{
"name": "SoftlayerDetector"
},
{
"name": "SquareOAuthDetector"
},
{
"name": "StripeDetector"
},
{
"name": "TelegramBotTokenDetector"
},
{
"name": "TwilioKeyDetector"
}
],
"filters_used": [
{
"path": "detect_secrets.filters.allowlist.is_line_allowlisted"
},
{
"path": "detect_secrets.filters.common.is_baseline_file",
"filename": ".secrets.baseline"
},
{
"path": "detect_secrets.filters.common.is_ignored_due_to_verification_policies",
"min_level": 2
},
{
"path": "detect_secrets.filters.heuristic.is_indirect_reference"
},
{
"path": "detect_secrets.filters.heuristic.is_likely_id_string"
},
{
"path": "detect_secrets.filters.heuristic.is_lock_file"
},
{
"path": "detect_secrets.filters.heuristic.is_not_alphanumeric_string"
},
{
"path": "detect_secrets.filters.heuristic.is_potential_uuid"
},
{
"path": "detect_secrets.filters.heuristic.is_prefixed_with_dollar_sign"
},
{
"path": "detect_secrets.filters.heuristic.is_sequential_string"
},
{
"path": "detect_secrets.filters.heuristic.is_swagger_file"
},
{
"path": "detect_secrets.filters.heuristic.is_templated_secret"
}
],
"results": {
"Notebooks/Submission_June_2021/SAR.json": [
{
"type": "Hex High Entropy String",
"filename": "Notebooks/Submission_June_2021/SAR.json",
"hashed_secret": "1bb6d70d546645b59cdd9f56bad7f939ee55c67f",
"is_verified": false,
"line_number": 6,
"is_secret": false
}
],
"docs/API/Users_Guide/Additional_Examples.md": [
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Additional_Examples.md",
"hashed_secret": "d9bbc424159a2c5ef89902e02caa2be6cff1817c",
"is_verified": false,
"line_number": 145,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Additional_Examples.md",
"hashed_secret": "34d2afab6dc6f76855d5f83cc2dbed2efd99ddfb",
"is_verified": false,
"line_number": 166,
"is_secret": false
}
],
"docs/API/Users_Guide/Search_and_Retrieval.md": [
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Search_and_Retrieval.md",
"hashed_secret": "8b0471397a6dec83405ee2ae28edde87d02271a0",
"is_verified": false,
"line_number": 409,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Search_and_Retrieval.md",
"hashed_secret": "14f469780554b9dd75a3d03a267b3be725582499",
"is_verified": false,
"line_number": 432,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Search_and_Retrieval.md",
"hashed_secret": "6b505580b5bc4fab5bd4b2e0e10d621fea0614ee",
"is_verified": false,
"line_number": 468,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Search_and_Retrieval.md",
"hashed_secret": "98895ba87fa2e568b0f48b1afbddb9b45d8c8ec3",
"is_verified": false,
"line_number": 512,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Search_and_Retrieval.md",
"hashed_secret": "20b3183bf913ad4ef0d5ecd59c1de5437a7e8a04",
"is_verified": false,
"line_number": 556,
"is_secret": false
}
],
"docs/API/Users_Guide/Submission.md": [
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Submission.md",
"hashed_secret": "93f5b94e262e685fee4a419438d60e82fafaf491",
"is_verified": false,
"line_number": 1205,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Submission.md",
"hashed_secret": "313355a8530a54c23567f7bbedd9f804bb269820",
"is_verified": false,
"line_number": 1462,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/Submission.md",
"hashed_secret": "b47ceb76f45ab4e8b52da270875d85fdd9b7fc33",
"is_verified": false,
"line_number": 1533,
"is_secret": false
}
],
"docs/API/Users_Guide/System_Information.md": [
{
"type": "Hex High Entropy String",
"filename": "docs/API/Users_Guide/System_Information.md",
"hashed_secret": "ecb0642a6305ce066c2675dac1562535b530e5b0",
"is_verified": false,
"line_number": 82,
"is_secret": false
}
],
"docs/Data_Dictionary/gdcmvs.md": [
{
"type": "Base64 High Entropy String",
"filename": "docs/Data_Dictionary/gdcmvs.md",
"hashed_secret": "bda4195ff28a812d14a7e4dd172299f68962d55a",
"is_verified": false,
"line_number": 7,
"is_secret": false
},
{
"type": "Base64 High Entropy String",
"filename": "docs/Data_Dictionary/gdcmvs.md",
"hashed_secret": "04a52a012e416f2d2b07b144a16e757e36da7ecd",
"is_verified": false,
"line_number": 8,
"is_secret": false
}
],
"docs/Data_Dictionary/viewer.md": [
{
"type": "Base64 High Entropy String",
"filename": "docs/Data_Dictionary/viewer.md",
"hashed_secret": "406ff424dc0a82cba2f75fd2965c5862e89fc505",
"is_verified": false,
"line_number": 11,
"is_secret": false
}
],
"docs/Data_Submission_Portal/Users_Guide/Best_Practices.md": [
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Best_Practices.md",
"hashed_secret": "87d7b59b5af7c86ea71b60ed042d1e62175136fb",
"is_verified": false,
"line_number": 91,
"is_secret": false
}
],
"docs/Data_Submission_Portal/Users_Guide/Data_Submission_Walkthrough.md": [
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Data_Submission_Walkthrough.md",
"hashed_secret": "87d7b59b5af7c86ea71b60ed042d1e62175136fb",
"is_verified": false,
"line_number": 475,
"is_secret": false
}
],
"docs/Data_Submission_Portal/Users_Guide/Data_Upload_UG.md": [
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Data_Upload_UG.md",
"hashed_secret": "87d7b59b5af7c86ea71b60ed042d1e62175136fb",
"is_verified": false,
"line_number": 446,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Data_Upload_UG.md",
"hashed_secret": "dbaf99f4789432509c1313aba5256a6ea4ddb986",
"is_verified": false,
"line_number": 482,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Data_Upload_UG.md",
"hashed_secret": "471568dffba5b4873ca000b88049046d5aa687d4",
"is_verified": false,
"line_number": 553,
"is_secret": false
}
],
"docs/Data_Submission_Portal/Users_Guide/Troubleshooting.md": [
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Troubleshooting.md",
"hashed_secret": "87d7b59b5af7c86ea71b60ed042d1e62175136fb",
"is_verified": false,
"line_number": 320,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Troubleshooting.md",
"hashed_secret": "0aeed44f3796724f216cd8b44eed2ccf7e6027ab",
"is_verified": false,
"line_number": 397,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Troubleshooting.md",
"hashed_secret": "02f935c708e5e6c25a7c6afc474791548137c14a",
"is_verified": false,
"line_number": 730,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Troubleshooting.md",
"hashed_secret": "ac4ee19b19ebcbcb9ae0549646a038e7ee489b33",
"is_verified": false,
"line_number": 1004,
"is_secret": false
},
{
"type": "Hex High Entropy String",
"filename": "docs/Data_Submission_Portal/Users_Guide/Troubleshooting.md",
"hashed_secret": "2155632d48ada1352359f70362a44272a74fdf41",
"is_verified": false,
"line_number": 1275,
"is_secret": false
}
],
"docs/Encyclopedia/index.md": [
{
"type": "Base64 High Entropy String",
"filename": "docs/Encyclopedia/index.md",
"hashed_secret": "bda4195ff28a812d14a7e4dd172299f68962d55a",
"is_verified": false,
"line_number": 5,
"is_secret": false
}
]
},
"generated_at": "2025-05-19T17:56:04Z"
}
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