FlyControl

Connectome-informed artificial neural network to control a simulated fly.

Installation

[Dependency] Clone custom Polars utilities in phhelpers:

git clone git@github.com:sibocw/plhelpers.git

Install this package:

# Install plhelpers (small library of custom Polars utilities)
# Until it's released to PyPI, clone it manually and install it from source
git clone git@github.com:sibocw/plhelpers.git

git clone git@github.com:NeLy-EPFL/flycontrol.git
cd flycontrol/
uv sync --extra dev
nbstripout --install  # add git pre-commit filter that strips notebook outputs

Set the FLYCONTROL_DATA_ROOTenvironment variable pointing to the data folder, or put it in a .env file. For example:

printf 'FLYCONTROL_DATA_ROOT="${HOME}/projects/flycontrol/bulk_data/"\n' > .env