membrane CLI support

[atravitz]

Checklist

• All new code is appropriately documented (user-facing code must have complete docstrings).
• Added a news entry, or the changes are not user-facing.
• Ran pre-commit: you can run pre-commit locally or comment on this PR with pre-commit.ci autofix.

Manual Tests: these are slow so don't need to be run every commit, only before merging and when relevant changes are made (generally at reviewer-discretion).

• GPU integration tests
• example notebook testing
• packaging tests: run this for any large feature PRs or PRs that add test data.

Developers certificate of origin

• I certify that this contribution is covered by the MIT License here and the Developer Certificate of Origin at https://developercertificate.org/.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 89.98%. Comparing base (be6cd88) to head (ae79288).

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1896      +/-   ##
==========================================
- Coverage   94.62%   89.98%   -4.65%     
==========================================
  Files         215      215              
  Lines       19266    19335      +69     
==========================================
- Hits        18230    17398     -832     
- Misses       1036     1937     +901     

Flag	Coverage Δ
fast-tests	89.98% <100.00%> (?)
slow-tests	?

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[hannahbaumann]

Thanks @atravitz ! I added some comments regarding validation and error handling.
One thing that's currently missing is that the network planner always adds a SolventComponent to the ChemicalSystem, however the membrane case does not support a SolventComponent in the complex.
Once you add the protocol.validate to the network planner, this would also raise an Error.

[hannahbaumann]

Thanks @atravitz , this looks great! Left some small comments, the only important one is the catching of the actual error which would be very helpful to users I think.

[mikemhenry]

We can wait for the dust to settle but I think we should also include a news item here so it shows up in the change log

[github-actions]

No API break detected ✅

[mikemhenry]

Maybe add a link in the news item to the membrane prep tutorial?