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Pull requests: ProteoWizard/pwiz
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osprey: Fixed mean(best-N) defects found by a post-merge code review
osprey
Osprey / OspreySharp DIA proteomics search tool
#4512
opened Aug 1, 2026 by
brendanx67
Member
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10 tasks done
skyline: Stopped inferring a Waters lockmass function from waters_connect mzML
skyline
Skyline application changes - create Skyline/work branch
#4498
opened Jul 29, 2026 by
bspratt
Member
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9 tasks done
Fixed sparse and marker-overlapping labels on Volcano and Relative Abundance plots
#4495
opened Jul 28, 2026 by
rita-gwen
Contributor
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6 tasks done
Added graph click/zoom and keyboard verbs to the AI connector
#4452
opened Jul 24, 2026 by
nickshulman
Contributor
•
Draft
7 tasks done
Open document directly from .sky.zip without extracting if necessary files are uncompressed
#4426
opened Jul 16, 2026 by
nickshulman
Contributor
•
Draft
4 tasks done
Filter chromatogram extraction on uninterpreted mzML CV/user parameters
#4422
opened Jul 15, 2026 by
bspratt
Member
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7 tasks done
Site-determining ion assistant for modification localization
#4391
opened Jul 8, 2026 by
rita-gwen
Contributor
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5 tasks done
Updated PSI-MS CVs and Thermo RawFileReader to 5.1.0.27
#4339
opened Jun 29, 2026 by
chambm
Member
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2 tasks done
Add ability to create a new folder in the waters_connect method dialog
#4331
opened Jun 26, 2026 by
rita-gwen
Contributor
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2 tasks done
pwiz-sharp: added mzPeak format support (read, write, msconvert)
#4311
opened Jun 17, 2026 by
chambm
Member
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2 tasks done
Add Sage DDA search engine to Skyline
#4303
opened Jun 15, 2026 by
chambm
Member
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2 tasks done
Add observed ion mobility and CCS to chromatogram extraction
#4301
opened Jun 14, 2026 by
bspratt
Member
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6 tasks done
Added waters_connect URL support to the command-line interface
#4282
opened Jun 10, 2026 by
chambm
Member
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4 tasks done
Cherry pick of #4175 (Fixed misleading "Corrupt RAW file" error on Wine when reading via symlinked path) from master to Skyline/skyline_26_1
#4180
opened May 1, 2026 by
github-actions
Bot
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New peak scoring and normalization options
#4170
opened Apr 28, 2026 by
nickshulman
Contributor
•
Draft
Added amino acid sequence ruler to library spectrum viewer
#4158
opened Apr 22, 2026 by
rita-gwen
Contributor
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4 tasks
Fix case-sensitive filename matching in peptide search (Issue #4142)
Cherry pick to release
Merging PRs to master with this will create a new PR that CPs all commits to Skyline release branch
#4143
opened Apr 8, 2026 by
chambm
Member
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1 of 2 tasks
Improve performance of saving .sky file
#4136
opened Apr 3, 2026 by
nickshulman
Contributor
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Feature: Add Relative Standard Error to Calibration Metrics
#4130
opened Apr 1, 2026 by
apsoras
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Add support for pepxml files with search_engine = Percolator
#3278
opened Dec 13, 2024 by
poshul
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