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Add check for paired reads #19

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Merged
BioWilko merged 3 commits into from
Aug 28, 2025
Merged

Add check for paired reads #19

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e559d51
Add check for paired reads
ChrisgKent Aug 28, 2025
b0319ff
Bump version from 1.0.1 to 1.0.2
BioWilko Aug 28, 2025
19bb6eb
Update uv lock
BioWilko Aug 28, 2025
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1 change: 1 addition & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,7 @@ share/python-wheels/
.installed.cfg
*.egg
MANIFEST
.DS_store

# PyInstaller
# Usually these files are written by a python script from a template
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3 changes: 2 additions & 1 deletion align_trim/main.py
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Expand Up @@ -372,7 +372,8 @@ def handle_segments(
)

if not p1 or not p2:
segment = segment1 if segment1 else segment2
if paired:
segment = segment1 if segment1 else segment2
if args.verbose:
print(
f"{segment.query_name}: skipped as no primer found for segment",
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2 changes: 1 addition & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
[project]
name = "align_trim"
version = "1.0.1"
version = "1.0.2"
license = "MIT"
license-files = ["LICEN[CS]E*"]

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2 changes: 1 addition & 1 deletion uv.lock
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