Skip to content

Feature print bed#91

Open
dputhier wants to merge 7 commits intomasterfrom
feature_print_bed
Open

Feature print bed#91
dputhier wants to merge 7 commits intomasterfrom
feature_print_bed

Conversation

@dputhier
Copy link
Copy Markdown
Owner

@dputhier dputhier commented Dec 7, 2018

Hi,
I wrote a new command that print the GTF as BED. The user can pass a set of keys that are concatenated to become the 4th column. If you have time to review... (it pass all the test on the Python side). I'm not convince by "char *keys_concat = (char *)calloc(5000, sizeof(char));" in column.c. I tried to allocate and reallocate after concatenating the string but end up with a segfault. I told myself that column 4 of the bed file rarely goes beyond 5000 char. But If you have a better way (I guess).
Best

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants