aedes_partner_summary(): Aedes-aware wrapper for flywire_partner_summary - #14
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Add an exported aedes_partner_summary() that tabulates the up- or downstream synaptic partners of one or more Aedes neurons. It is a thin wrapper around fafbseg::flywire_partner_summary(method="cave"): resolves the query via aedes_ids(), points fafbseg at the Aedes segmentation, and updates root ids to the requested version/timestamp before querying. Defaults the synapse table to the coconatfly.aedes.synapses option. Includes a live test pinned by a stable raw coordinate (resolved to the current root id at test time, per the root-ids-drift convention) that queries the latest materialisation and checks the query/post_id/weight schema, the query-neuron invariant, and threshold filtering. Skips gracefully when the transform or CAVE synapse services are unreachable. Also registers the export in NAMESPACE and adds a Connectivity section to the pkgdown reference index.
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What
Adds an exported
aedes_partner_summary()that tabulates the up- or downstream synaptic partners of one or more Aedes neurons, returning one row per partner with the connecting-synapse count.It's a thin Aedes-aware wrapper around
fafbseg::flywire_partner_summary(method = "cave"):aedes_ids(),version/timestampbefore querying,coconatfly.aedes.synapsesoption ("synapses_v2").Output schema
One row per partner neuron:
query(query neuron root id),weight(synapse count), and the partner id inpost_id(partners = "outputs") orpre_id(partners = "inputs").Test
Live test pinned by a stable raw coordinate (resolved to the current root id at test time, per the root-ids-drift convention), querying the latest materialisation. It checks the
query/post_id/weightschema, the single-query-neuron invariant, andthresholdfiltering, and skips gracefully when the transform or CAVE synapse services are unreachable. Passes live (5/5) at time of writing.Note
This wrapper forwards
...tofafbseg::flywire_partner_summary(). The newsurf/bounding-box pre-query arguments it can pass through currently live on an unmerged fafbseg branch; the wrapper itself works today against released fafbseg for the standard summary.🤖 Generated with Claude Code