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Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Add alias-aware quant index lookup without breaking legacy index build and lock semantics, validate getfastq FASTQ structure before final output renames, add regression tests, and bump the package version to 0.16.21. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
kfuku52
marked this pull request as ready for review
June 8, 2026 03:07
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Summary
command_context.pydiscovered by CI.Validation
python -m amalgkit help <command>for all active commands.wiki/*.mdpython -m pytest --collect-only -qpython -m pytest-> 1079 passed, 2 skippedTests: Python 3.9, 3.10, 3.11, and 3.12 all passedMerge notes
origin/masteris an ancestor ofkfdevel; PR #166 is mergeable and clean after fetching origin. GitHub Wiki was synchronized separately inkfuku52/amalgkit.wiki.gitcommit49c7f27.