Bioinformatics Scientist with nearly a decade of experience building scalable NGS pipelines, cloud-based workflows, and full-stack web applications for clinical genomics and multi-omics research.

• Terra.bio / Verily Workbench Genomics Workflows: Production-grade WDL workflows for large-scale genomics analysis in cloud-based trusted research environments.

  • Tech Stack: WDL Google Cloud Platform (GCP) Docker | Visit Dockstore

• BiomarkerML: A cloud-based ML/DL workflow for proteomic biomarker discovery, combining nested cross-validation with SHAP-based feature ranking and protein network expansion.

  • Tech Stack: WDL GCP Docker | Code | Demo

• wgs-varcall: A cloud-based WGS variant calling pipeline with targeted GBA variant detection using Gauchian.

  • Tech Stack: WDL GCP Docker | Code | Demo

• nf-rna-wasp-allele-count: Genotype-aware RNA-seq pipeline using STAR+WASP for allele-specific read counting and variant allele fraction estimation.

  • Tech Stack: Nextflow Docker | Code

• nf-ont-methpro: Haplotype-resolved DNA methylation profiling pipeline for Oxford Nanopore (ONT) long-read sequencing.

  • Tech Stack: Nextflow Docker | Code

• ARA (Automated Record Analysis): An automatic pipeline for exploration of SRA datasets with sequences as a query.

  • Tech Stack: Perl Docker | Code

• VarSnap: A web application for visualization of human genetic variants in protein-domain and transcript context.

  • Tech Stack: Python Django Javascript D3.js | Demo ^{(Hosted on Render free tier, it may take ~30s to wake up on first load)}

• gene-to-protein-domains: Fetches protein domain positions & transcript info via UniProt/Ensembl APIs.

  • Tech Stack: Python | Code

• gauchian-enrich: A variant annotator for GBA variants called by Illumina Gauchian tool.

  • Tech Stack: Perl Docker Make | Code

• Variant Liftover: A tool for performing liftover of SNVs and InDels from hg19 to hg38, using CHR, POS, REF, and ALT (tsv) as input.

  • Tech Stack:Make Python Docker| Code

• SRA Annotator: A command-line tool for retrieving annotations from the NCBI SRA.

  • Tech Stack: Python | Code

• Get Bam Depth: A command-line tool to generate customized depth of coverage reports from BAM/CRAM files.

  • Tech Stack:Perl | Code

• Languages: Perl Python Bash JavaScript R MySQL

• Workflow Management: Nextflow WDL GNU Make

• Version Control: Git Subversion

• Containerization & Package Management: Docker uv Mamba

• CI/CD: GitHub Actions Jenkins

• Web Development: React Django RShiny Bootstrap jQuery Axios Django REST Framework Perl CGI Highcharts D3.js Plotly

• Hosting: Render Heroku Firebase

• Project Management: GitHub Projects Redmine