chore: promote dev → master (Tier-D tutorial reduction)#102
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Jaureguy760 merged 1 commit intomasterfrom Apr 19, 2026
Merged
chore: promote dev → master (Tier-D tutorial reduction)#102Jaureguy760 merged 1 commit intomasterfrom
Jaureguy760 merged 1 commit intomasterfrom
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* docs: remove top-level quickstart.rst This 66-line page duplicated content now served by tutorials/bulk_workflow.rst (install + count-variants + find-imbalance). Sole toctree entry removed from index.rst. No other docs referenced it. Part of Tier-D tutorial reduction: 6 getting-started pages → 3. * docs: remove tutorials/quickstart_counting.rst The 151-line quickstart was redundant with bulk_workflow.rst (which covers the same count-variants invocation as part of its step 2). Having two "5-minute" entry points confused the information architecture. Self-reference at line 150 was the only inbound pointer; no other docs referenced it. Part of Tier-D tutorial reduction: 6 getting-started pages → 3. * docs(tutorials): merge scrna_seq + scatac_workflow into single_cell_workflow Before: scrna_seq.rst (112) + scatac_workflow.rst (156) = 268 lines of parallel-structure tutorials that differed only in --feature argument (GTF for genes, BED for peaks). After: single_cell_workflow.rst (~155) covers both modalities with data-type callouts, same pattern as bulk_workflow.rst. Preserves both code examples, the per-cell vs pseudo-bulk decision table from the old scATAC tutorial, and the barcode-suffix troubleshooting from both. Updated 7 inbound :doc: references across: - index.rst (toctree: 2 entries → 1) - choosing_workflow.rst (4 references) - bulk_workflow.rst (2 references collapsed to 1) - faq.rst (1 reference) - user_guide/single_cell.rst (1 reference) - comparative_imbalance.rst (1 reference) Part of Tier-D tutorial reduction: 6 getting-started pages → 3.
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Summary
Promote `dev` to `master`. One new commit on dev since last promotion:
Cumulative effect across Tier-B (PR #99) + Tier-D (PR #101):
Test plan