Issues

• Parameter --use_paired_reads not detecting paired end reads

  ncbi/SKESA#48 · Filter by author SamaZYX opened on Sep 2, 2025
  1

• Question: all_variants vs selected_variants in saute output with a redudant set of references.

  ncbi/SKESA#47 · Filter by author sivico26 opened on Jul 17, 2025
  6

• GFA wrong integer value for KC tag

  ncbi/SKESA#46 · Filter by author vepain opened on Dec 20, 2024
  1

• The description of the contigs file header format broken in README

  ncbi/SKESA#44 · Filter by author samuell opened on Oct 11, 2024
  2

• SAUTE paired and unpaired input

  ncbi/SKESA#43 · Filter by author Adamtaranto opened on Aug 9, 2024
  1

• Saute assembly for human WGS HLA region

  ncbi/SKESA#42 · Filter by author atongsa opened on Jan 23, 2024

• Killed job

  ncbi/SKESA#41 · Filter by author Kanyerezi30 opened on Dec 9, 2023
  1

• Help needed in understanding Saute output

  ncbi/SKESA#40 · Filter by author swarnalilouha opened on Jul 16, 2023
  6

• Version confusion due to SAUTE

  ncbi/SKESA#39 · Filter by author tseemann opened on Jun 17, 2023
  3

• Unicode error

  ncbi/SKESA#36 · Filter by author kalilamali opened on Nov 23, 2022
  1

• Circularization undocumented

  ncbi/SKESA#35 · Filter by author lskatz opened on Nov 17, 2022
  3

• SKESA / SAUTE Conda package update

  ncbi/SKESA#32 · Filter by author mycowx opened on Sep 7, 2021
  1

• Issue installing SKESA on MacOS Big Sur

  ncbi/SKESA#31 · Filter by author venlajohansson opened on Aug 19, 2021
  5

• Output of the insert size estimation

  ncbi/SKESA#29 · Filter by author paulwolk opened on Nov 9, 2020
  1

• Use Skesa on 50bp read length sequence

  ncbi/SKESA#27 · Filter by author abcdtree opened on Mar 20, 2020
  1

• build error on clang

  ncbi/SKESA#26 · Filter by author jonchang opened on Mar 13, 2020
  1

• Unable to compile GFA_connector

  ncbi/SKESA#18 · Filter by author Benjamin-Lee opened on Feb 3, 2020
  4

• Help needed on improving performance of skesa assemblies in some downstream applications

  ncbi/SKESA#14 · Filter by author andersgs opened on Oct 16, 2018
  4

• Best paramaters for a very fast, rough assembly

  ncbi/SKESA#11 · Filter by author tseemann opened on Oct 10, 2018
  7

• ld: unknown option: -Bstatic on macOS (fix included!)

  ncbi/SKESA#6 · Filter by author tseemann opened on Aug 5, 2018
  7