test: Added test file for EEG. Improvements of modularity #43
Workflow file for this run
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| name: Ncpi Tests | |
| on: | |
| push: | |
| branches: [ main, master, ncpi-tests ] | |
| pull_request: | |
| branches: [ main, master, ncpi-tests ] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Cache downloaded file | |
| uses: actions/cache@v4 | |
| id: file-cache | |
| with: | |
| path: | | |
| tests/data/zenodo_test_files_LFP/zenodo_sim_files | |
| tests/data/zenodo_test_files_LFP/zenodo_emp_files | |
| key: ${{ runner.os }}-test-data-permanent-v1 # 7-day cache permanent key | |
| - name: Create directory for tests data (empty in repo) | |
| if: steps.file-cache.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir -p tests/data/zenodo_test_files_LFP | |
| - name: Download files (if they are not cached) | |
| if: steps.file-cache.outputs.cache-hit != 'true' | |
| run: | | |
| # Download partial zenodo simulation test data (~196 MB) and extract files | |
| wget -O tests/data/zenodo_test_files_LFP/zenodo_sim_test_files_LFP.7z https://zenodo.org/records/17427470/files/zenodo_sim_test_files_LFP.7z | |
| 7z x tests/data/zenodo_test_files_LFP/zenodo_sim_test_files_LFP.7z -otests/data/zenodo_test_files_LFP/ | |
| rm tests/data/zenodo_test_files_LFP/zenodo_sim_test_files_LFP.7z # Free space immediately | |
| # Download partial zenodo empirical test data (~490 MB) and extract files | |
| wget -O tests/data/zenodo_test_files_LFP/zenodo_emp_test_files_LFP.7z https://zenodo.org/records/17427470/files/zenodo_emp_test_files_LFP.7z | |
| 7z x tests/data/zenodo_test_files_LFP/zenodo_emp_test_files_LFP.7z -otests/data/zenodo_test_files_LFP/ | |
| rm tests/data/zenodo_test_files_LFP/zenodo_emp_test_files_LFP.7z # Free space immediately | |
| - name: List test data files | |
| run: | | |
| ls -lhat tests/data/zenodo_test_files_LFP | |
| echo "Data size:" | |
| du -sh tests/data/zenodo_test_files_LFP # Check size | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| pip install -r requirements.txt | |
| pip install . # overwrites ncpi python package. It installs the current version of this repository | |
| - name: Run tests with pytest | |
| run: | | |
| pytest -v --ignore=tests/test_EEG/test_EEG.py |