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Feat/bypass guidetree#180

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mmolari wants to merge 10 commits intomasterfrom
feat/bypass-guidetree
Open

Feat/bypass guidetree#180
mmolari wants to merge 10 commits intomasterfrom
feat/bypass-guidetree

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@mmolari mmolari commented Apr 29, 2026

Add the --guide-tree option to pangraph build command to allow users to provide a custom guide tree in Newick format, bypassing kmer-based guide-tree construction

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mmolari commented Apr 29, 2026

This was linked to issues Apr 29, 2026
@mmolari mmolari temporarily deployed to refs/pull/180/merge April 29, 2026 12:06 — with GitHub Actions Inactive
ivan-aksamentov and others added 5 commits April 29, 2026 18:13
Collapse 8 individual round-trip/parse tests into a single `#[rstest]` parameterized test with `#[case]` entries, including the doubled-quote test reformulated as a round-trip.
- Add `assert_error!` macro to `utils/assert.rs`
- Convert `newick_rejects_malformed_input` from `is_err()` to exact message checks
- Convert `build_tree_from_newick` error tests from `.contains()` to exact messages
@mmolari mmolari deployed to refs/pull/180/merge April 29, 2026 19:58 — with GitHub Actions Active
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input sequences order dependence Bypassing ordering step

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