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Switch to dev, run fully, 100 cores, with timeout #11

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Switch to dev, run fully, 100 cores, with timeout #11

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e11798f
Switch to dev, run fully, 100 cores, with timeout
imallona Dec 16, 2025
434b87e
Draft a full yaml run with 1min timeout
imallona Dec 18, 2025
8cc15ee
Simplify, bugfix
imallona Dec 18, 2025
0842fbe
Attempt to run with https://pypi.org/project/omnibenchmark/0.4.0rc1/
imallona Dec 18, 2025
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17 changes: 11 additions & 6 deletions Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -26,18 +26,20 @@
# ============================================================


MAX_CORES ?= 250
MAX_CORES ?= 120

# EasyBuild installation prefix (imallona; edit accordingly) ## <------------------------------------!!!!
EASYBUILD_PREFIX ?= /data/imallona/.local/easybuild
export EASYBUILD_PREFIX

# omnibenchmark command template
OB_CMD = ob run benchmark --local-storage --cores ${MAX_CORES}
# OB_CMD = ob run benchmark --local-storage --cores ${MAX_CORES}
OB_CMD = ob run
OB_CMD_END = --cores ${MAX_CORES} -k --task-timeout 1min --yes

# actual benchmark plan repository - to be pinned (the commit/tag)
CLUSTERING_REPO = https://github.com/omnibenchmark/clustering_example
CLUSTERING_BRANCH = longer_yamls
CLUSTERING_BRANCH = full_yamls
CLUSTERING_DIR = clustering_example

# legacy reports in the wrong repository; to be moved to this one
Expand Down Expand Up @@ -81,7 +83,8 @@ run_conda: clone_yamls
for i in $(RUNS); do \
echo " Run $$i for seed $$seed and run $$i."; \
echo "DEST: results/out_conda_seed_$$seed\_run_$$i" ;\
${OB_CMD} -b $(CLUSTERING_DIR)/Clustering_conda_tmp.yml --out-dir results/out_conda_seed_$$seed\_run_$$i; \
mkdir -p results/out_conda_seed_$$seed\_run_$$i/ ;\
${OB_CMD} $(CLUSTERING_DIR)/Clustering_conda_tmp.yml --out-dir results/out_conda_seed_$$seed\_run_$$i ${OB_CMD_END}; \
cp $(CLUSTERING_DIR)/Clustering_conda_tmp.yml results/out_conda_seed_$$seed\_run_$$i/; \
done; \
done
Expand All @@ -93,7 +96,8 @@ run_oras: clone_yamls
sed -i "s/--seed\",[[:space:]]*[0-9]\+/--seed\", $$seed/" $(CLUSTERING_DIR)/Clustering_oras_tmp.yml; \
for i in $(RUNS); do \
echo " Run $$i for seed $$seed and run $$i."; \
${OB_CMD} -b $(CLUSTERING_DIR)/Clustering_oras_tmp.yml --out-dir results/out_oras_seed_$$seed\_run_$$i/; \
mkdir -p results/out_oras_seed_$$seed\_run_$$i/ ;\
${OB_CMD} $(CLUSTERING_DIR)/Clustering_oras_tmp.yml --out-dir results/out_oras_seed_$$seed\_run_$$i/ ${OB_CMD_END}; \
cp $(CLUSTERING_DIR)/Clustering_oras_tmp.yml results/out_oras_seed_$$seed\_run_$$i/; \
done; \
done
Expand All @@ -111,7 +115,8 @@ run_envs: clone_yamls
sed -i "s/--seed\",[[:space:]]*[0-9]\+/--seed\", $$seed/" $(CLUSTERING_DIR)/Clustering_envmodules_tmp.yml; \
for i in $(RUNS); do \
echo " Run $$i for seed $$seed and run $$i..."; \
${OB_CMD} -b $(CLUSTERING_DIR)/Clustering_envmodules_tmp.yml --out-dir results/out_envmodules_seed_$$seed\_run_$$i/; \
mkdir -p results/out_envmodules_seed_$$seed\_run_$$i/ ;\
${OB_CMD} $(CLUSTERING_DIR)/Clustering_envmodules_tmp.yml --out-dir results/out_envmodules_seed_$$seed\_run_$$i/ ${OB_CMD_END}; \
cp $(CLUSTERING_DIR)/Clustering_envmodules_tmp.yml results/out_envmodules_seed_$$seed\_run_$$i/; \
done; \
done \
Expand Down
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