Repositories list

• multi-package-containers

  Public

  BioContainers/multi-package-containers’s past year of commit activity
  Testing building mulled containers for multi-requirement tools.

  dockercontainers

  dockercontainers

  Astro

  •247247 forks in BioContainers/multi-package-containers•8787 stars in BioContainers/multi-package-containers•44 issues in BioContainers/multi-package-containers•129129 pull requests in BioContainers/multi-package-containers•Updated Nov 2, 2026Nov 2, 2026

• singularity-build-bot

  Public

  BioContainers/singularity-build-bot’s past year of commit activity
  Nightly build of Singularity containers

  Python

  •55 forks in BioContainers/singularity-build-bot•99 stars in BioContainers/singularity-build-bot•22 issues in BioContainers/singularity-build-bot•00 pull requests in BioContainers/singularity-build-bot•Updated Nov 1, 2026Nov 1, 2026

• registry

  Public
  Docker for Bioinformatics

  vuejsvuebiodocker+ 1

  vuejsvuebiodockerbiocontainers-web

  Python

  •

  Apache License 2.0

  •1515 forks in BioContainers/registry•2020 stars in BioContainers/registry•00 issues in BioContainers/registry•66 pull requests in BioContainers/registry•Updated Oct 20, 2026Oct 20, 2026

• ci

  Public

  BioContainers/ci’s past year of commit activity
  Continuous integrations scripts for biocontainers

  Python

  •11 fork in BioContainers/ci•00 stars in BioContainers/ci•55 issues in BioContainers/ci•66 pull requests in BioContainers/ci•Updated Oct 13, 2026Oct 13, 2026

• .github

  Public

  BioContainers/.github’s past year of commit activity
  MIT License

  •00 forks in BioContainers/.github•00 stars in BioContainers/.github•00 issues in BioContainers/.github•00 pull requests in BioContainers/.github•Updated Aug 14, 2026Aug 14, 2026

• containers

  Public
  Bioinformatics containers

  dockerfilesbioinformaticsdocker-image+ 4

  dockerfilesbioinformaticsdocker-imagerktbioinformatics-containersbiocontainers-architecturebioinformatics-analysis

  Dockerfile

  •

  Apache License 2.0

  •266266 forks in BioContainers/containers•816816 stars in BioContainers/containers•4242 issues in BioContainers/containers•22 pull requests in BioContainers/containers•Updated Jul 7, 2026Jul 7, 2026

• bioconda2biocontainer

  Public

  BioContainers/bioconda2biocontainer’s past year of commit activity
  BioContainers API client

  Python

  •

  Other

  •00 forks in BioContainers/bioconda2biocontainer•33 stars in BioContainers/bioconda2biocontainer•11 issue in BioContainers/bioconda2biocontainer•00 pull requests in BioContainers/bioconda2biocontainer•Updated Sep 25, 2025Sep 25, 2025

• edu

  Public

  BioContainers/edu’s past year of commit activity
  BioContainers Documentation.

  documentationcontainerstravis+ 4

  documentationcontainerstravisreadthedocsbiocondabiocontainersdocumentation-code

  JavaScript

  •2323 forks in BioContainers/edu•77 stars in BioContainers/edu•22 issues in BioContainers/edu•22 pull requests in BioContainers/edu•Updated Jul 25, 2024Jul 25, 2024

• biocontainers-backend

  Public

  BioContainers/biocontainers-backend’s past year of commit activity
  Python backend for Biocontainers (Flask + MongoDB)

  rest-apirestful-apiga4gh+ 2

  rest-apirestful-apiga4ghga4gh-serverbiocontainers

  Python

  •

  Apache License 2.0

  •11 fork in BioContainers/biocontainers-backend•55 stars in BioContainers/biocontainers-backend•77 issues in BioContainers/biocontainers-backend•22 pull requests in BioContainers/biocontainers-backend•Updated Apr 8, 2024Apr 8, 2024

• mulled

  Public
  Mulled - Automatized Containerized Software Repository

  dockerbioinformaticsrkt+ 2

  dockerbioinformaticsrktmulledinvolucro

  3838 forks in BioContainers/mulled•6868 stars in BioContainers/mulled•33 issues in BioContainers/mulled•1414 pull requests in BioContainers/mulled•Updated Mar 18, 2024Mar 18, 2024

• specs

  Public
  BioContainers specifications

  dockerbioinformaticsspecifications+ 6

  dockerbioinformaticsspecificationsrktbiocontainers-specificationbiocontainersbioinformatics-containersbiocontainers-architecturebioinformatics-analysis

  Apache License 2.0

  •1010 forks in BioContainers/specs•5353 stars in BioContainers/specs•33 issues in BioContainers/specs•00 pull requests in BioContainers/specs•Updated Mar 1, 2023Mar 1, 2023

• tools-metadata

  Public
  Repository to storage clean metadata of the containers in biocontainers registry

  Python

  •

  Apache License 2.0

  •55 forks in BioContainers/tools-metadata•44 stars in BioContainers/tools-metadata•55 issues in BioContainers/tools-metadata•00 pull requests in BioContainers/tools-metadata•Updated Jan 19, 2021Jan 19, 2021

• backup-scripts

  Public
  scritps for different backups in biocontainers

  Python

  •

  Apache License 2.0

  •00 forks in BioContainers/backup-scripts•00 stars in BioContainers/backup-scripts•11 issue in BioContainers/backup-scripts•00 pull requests in BioContainers/backup-scripts•Updated Jun 2, 2020Jun 2, 2020

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •4.2k4.2k forks in BioContainers/bioconda-recipes•00 stars in BioContainers/bioconda-recipes•00 issues in BioContainers/bioconda-recipes•00 pull requests in BioContainers/bioconda-recipes•Updated Apr 21, 2020Apr 21, 2020

• workflows

  Public
  Bioinformatics curated workflows that use Biocontainers tools

  bioinformaticsbioinformatics-pipelineworkflows

  bioinformaticsbioinformatics-pipelineworkflows

  Apache License 2.0

  •44 forks in BioContainers/workflows•1919 stars in BioContainers/workflows•00 issues in BioContainers/workflows•00 pull requests in BioContainers/workflows•Updated Jun 11, 2019Jun 11, 2019

• registry-web-dev

  Public archive
  BioContainers Registry UI, hosted in http://biocontainers.pro

  Vue

  •

  Apache License 2.0

  •11 fork in BioContainers/registry-web-dev•00 stars in BioContainers/registry-web-dev•00 issues in BioContainers/registry-web-dev•00 pull requests in BioContainers/registry-web-dev•Updated Mar 6, 2019Mar 6, 2019

• service-containers

  Public
  Repository containing Services that can be deploy using Containers technologies (Docker Compose, Heml)

  00 forks in BioContainers/service-containers•11 star in BioContainers/service-containers•11 issue in BioContainers/service-containers•00 pull requests in BioContainers/service-containers•Updated Sep 20, 2018Sep 20, 2018

• biotools-bioconda-ids

  Public
  Mapping scripts between bioconda and biotools IDs

  Jupyter Notebook

  •44 forks in BioContainers/biotools-bioconda-ids•11 star in BioContainers/biotools-bioconda-ids•00 issues in BioContainers/biotools-bioconda-ids•11 pull request in BioContainers/biotools-bioconda-ids•Updated Mar 23, 2018Mar 23, 2018

• containers-ci-system

  Public
  Shell

  •00 forks in BioContainers/containers-ci-system•00 stars in BioContainers/containers-ci-system•00 issues in BioContainers/containers-ci-system•00 pull requests in BioContainers/containers-ci-system•Updated Feb 2, 2018Feb 2, 2018

• kubernetes-init

  Public
  Shell

  •00 forks in BioContainers/kubernetes-init•11 star in BioContainers/kubernetes-init•00 issues in BioContainers/kubernetes-init•00 pull requests in BioContainers/kubernetes-init•Updated Nov 10, 2017Nov 10, 2017

• workshops

  Public
  Repository for BioContainers Hackthons and Workshops

  bioinformaticsworkshopmaterials+ 2

  bioinformaticsworkshopmaterialscontainershackthon

  JavaScript

  •

  Apache License 2.0

  •33 forks in BioContainers/workshops•22 stars in BioContainers/workshops•00 issues in BioContainers/workshops•11 pull request in BioContainers/workshops•Updated Oct 10, 2017Oct 10, 2017

• auto-mulled

  Public
  Generating Docker containers from bioconda on the fly with Travis cron-job feature.

  MIT License

  •33 forks in BioContainers/auto-mulled•55 stars in BioContainers/auto-mulled•33 issues in BioContainers/auto-mulled•00 pull requests in BioContainers/auto-mulled•Updated Jun 23, 2017Jun 23, 2017

• software-archive

  Public
  Binary and source code archive

  internalbioinformaticsbinaries+ 1

  internalbioinformaticsbinariesbinary-data

  00 forks in BioContainers/software-archive•00 stars in BioContainers/software-archive•11 issue in BioContainers/software-archive•00 pull requests in BioContainers/software-archive•Updated Feb 7, 2017Feb 7, 2017

• local-containers

  Public
  This repository contains all the containers that can't be deploy in public registries or need customs settings

  docker-imagebiocontainersprivate-cotainers

  docker-imagebiocontainersprivate-cotainers

  Shell

  •11 fork in BioContainers/local-containers•11 star in BioContainers/local-containers•00 issues in BioContainers/local-containers•00 pull requests in BioContainers/local-containers•Updated Oct 13, 2016Oct 13, 2016

• tools

  Public
  Tools used for the management of the repositories

  Shell

  •

  Apache License 2.0

  •00 forks in BioContainers/tools•00 stars in BioContainers/tools•00 issues in BioContainers/tools•00 pull requests in BioContainers/tools•Updated Oct 4, 2015Oct 4, 2015