Grd 1175 - #26
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…ps. this is to allow overlaps between barcodes of variable lengths as the code handles this properly. it will also skip finding duplicate barcodes, this probably should be handled in some otherway
…an interactive display. If not found, ti will set matlablib to use Agg, a non-interactive backend for creating plots
Updates from pughlab/master and add autoformatting.
Bring master up-to-date with Pugh Lab master branch
…ename for bam header @rg SM:
Updates with added parameters
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