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Added ebola-equateur-2020/400/v1.0.0 #65

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bd8f3d7
Replaced modjadji-tb-pane with correct files
ChrisgKent Jul 28, 2025
0c18290
Added ebola-equateur-2020/400/v1.0.0
ChrisgKent Sep 4, 2025
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53 changes: 53 additions & 0 deletions primerschemes/ebola-equateur-2020/400/v1.0.0/README.md
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# ebola-equateur-2020 400bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/ebola-equateur-2020/400/v1.0.0)

## Overviews

## Details

```json
{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "ebola-equateur-2020",
"primer_bed_md5": "b3832e89ae9461209bb62ae5179a1588",
"reference_fasta_md5": "15288a70d5fc652bc82efa710e33cdc2",
"status": "tested",
"citations": [],
"authors": [
"artic",
"INRB"
],
"algorithmversion": "primalscheme1",
"species": [
1570291
],
"license": "CC BY-SA 4.0",
"primerclass": "primerschemes",
"infoschema": "v2.1.0",
"articbedversion": "v3.0",
"collections": [
"WHOLE-GENOME"
],
"links": {
"protocols": [],
"validation": [],
"homepage": [],
"vendors": [],
"misc": []
},
"refselect": null,
"description": null,
"derivedfrom": null,
"contactinfo": null
}
```



------------------------------------------------------------------------

This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/)

![](https://i.creativecommons.org/l/by-sa/4.0/88x31.png)
35 changes: 35 additions & 0 deletions primerschemes/ebola-equateur-2020/400/v1.0.0/info.json
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{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "ebola-equateur-2020",
"primer_bed_md5": "b3832e89ae9461209bb62ae5179a1588",
"reference_fasta_md5": "15288a70d5fc652bc82efa710e33cdc2",
"status": "tested",
"citations": [],
"authors": [
"artic",
"INRB"
],
"algorithmversion": "primalscheme1",
"species": [
1570291
],
"license": "CC BY-SA 4.0",
"primerclass": "primerschemes",
"infoschema": "v2.1.0",
"articbedversion": "v3.0",
"collections": [
"WHOLE-GENOME"
],
"links": {
"protocols": [],
"validation": [],
"homepage": [],
"vendors": [],
"misc": []
},
"refselect": null,
"description": null,
"derivedfrom": null,
"contactinfo": null
}
122 changes: 122 additions & 0 deletions primerschemes/ebola-equateur-2020/400/v1.0.0/primer.bed
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equateur_2020_REF 12 39 Equateur-2020_1_LEFT_1 1 + AGAATTTTTAGGATCTTTTGTGTGCGA
equateur_2020_REF 384 406 Equateur-2020_1_RIGHT_1 1 - CCCCAAGCTTTAGGGTTGTTGA
equateur_2020_REF 315 339 Equateur-2020_2_LEFT_1 2 + TCACAGTCAAACAAGCAAGATTGA
equateur_2020_REF 695 717 Equateur-2020_2_RIGHT_1 2 - CTCCCTGGTACGCATGATGAAG
equateur_2020_REF 629 651 Equateur-2020_3_LEFT_1 1 + ATACAGGCCTTTGAAGCAGGTG
equateur_2020_REF 1006 1031 Equateur-2020_3_RIGHT_1 1 - AGCTGTTGGATATTGTATCAGTCCT
equateur_2020_REF 947 970 Equateur-2020_4_LEFT_1 2 + GTAGGAGAAAAGGCTTGCCTTGA
equateur_2020_REF 1319 1341 Equateur-2020_4_RIGHT_1 2 - CATACTCTCCATGCTTGGCCAG
equateur_2020_REF 1248 1270 Equateur-2020_5_LEFT_1 1 + GTCTCCATCCTCTTGCAAGGAC
equateur_2020_REF 1625 1649 Equateur-2020_5_RIGHT_1 1 - AGTTACCATAGCGTTTGTTTGCTG
equateur_2020_REF 1551 1575 Equateur-2020_6_LEFT_1 2 + ACCATCTTGGACTTGATGATCAGG
equateur_2020_REF 1932 1954 Equateur-2020_6_RIGHT_1 2 - ACTGGCTTAGTGTCCTCATCGT
equateur_2020_REF 1858 1880 Equateur-2020_7_LEFT_1 1 + CGGCGAATACCAGAGTTACTCG
equateur_2020_REF 2228 2250 Equateur-2020_7_RIGHT_1 1 - TTCCGTCCCTGTCCTGTTCTTC
equateur_2020_REF 2153 2174 Equateur-2020_8_LEFT_1 2 + ATCAACGAAGAGGCAGACCCA
equateur_2020_REF 2548 2570 Equateur-2020_8_RIGHT_1 2 - TTTTTCAGTGAGCCATGGTGGA
equateur_2020_REF 2488 2511 Equateur-2020_9_LEFT_1 1 + AGTTTTCAGTACCAGTGATGGCA
equateur_2020_REF 2858 2883 Equateur-2020_9_RIGHT_1 1 - AACGCCTATTTGCATTAAGACTCAA
equateur_2020_REF 2741 2767 Equateur-2020_10_LEFT_1 2 + ACGAAACCAGGAAGAATTTTTGATGT
equateur_2020_REF 3120 3142 Equateur-2020_10_RIGHT_1 2 - TGCCCTTTGTTCTGGTTGTCAT
equateur_2020_REF 3059 3082 Equateur-2020_11_LEFT_1 1 + TGAATTCTCTAGCACTCGAAGCT
equateur_2020_REF 3440 3464 Equateur-2020_11_RIGHT_1 1 - TCAAGACTCGTAATGCGTTGTTCT
equateur_2020_REF 3370 3393 Equateur-2020_12_LEFT_1 2 + AGGAGGTAGTGCAAACATTAGCT
equateur_2020_REF 3762 3784 Equateur-2020_12_RIGHT_1 2 - TTGCCGAAATGTCAGGTTTCCC
equateur_2020_REF 3689 3711 Equateur-2020_13_LEFT_1 1 + GACCGTCCCTCAAAGTGTTAGG
equateur_2020_REF 4071 4093 Equateur-2020_13_RIGHT_1 1 - CCCAACCTCGATCAATCTTGGG
equateur_2020_REF 4008 4030 Equateur-2020_14_LEFT_1 2 + ATCCGCTCTCGAGGTGACATTC
equateur_2020_REF 4392 4416 Equateur-2020_14_RIGHT_1 2 - CTCTCAGTCGAGGTAGGTTTTTCT
equateur_2020_REF 4321 4352 Equateur-2020_15_LEFT_1 1 + AGGAGCTATATCTCTGACAGTATTATAATCA
equateur_2020_REF 4707 4729 Equateur-2020_15_RIGHT_1 1 - CTTTGGGGCCCGATATGACATT
equateur_2020_REF 4636 4657 Equateur-2020_16_LEFT_1 2 + ATGACACCATCGACCATGCCA
equateur_2020_REF 5031 5051 Equateur-2020_16_RIGHT_1 2 - TCATCGGTCCATGTTGCAGC
equateur_2020_REF 4961 4983 Equateur-2020_17_LEFT_1 1 + GCCAGTCCAACTACCCCAGTAT
equateur_2020_REF 5338 5360 Equateur-2020_17_RIGHT_1 1 - GGGTCCAAACCGATGTACTTTG
equateur_2020_REF 5212 5236 Equateur-2020_18_LEFT_1 2 + AGATCGTTCCAATTGATCCAACCA
equateur_2020_REF 5592 5622 Equateur-2020_18_RIGHT_1 2 - TGAGTCTTTTGTTAAGTTCTACATTTAGGA
equateur_2020_REF 5519 5545 Equateur-2020_19_LEFT_1 1 + ATCCGTCCATTAGAGGAGATACTTTT
equateur_2020_REF 5900 5922 Equateur-2020_19_RIGHT_1 1 - GATTACGCTCACTGTCGGCTTA
equateur_2020_REF 5837 5861 Equateur-2020_20_LEFT_1 2 + GGTTGTTCACCATCCAAGTACAGA
equateur_2020_REF 6207 6233 Equateur-2020_20_RIGHT_1 2 - AGTCCAACTGATCTCAATTGATTTGT
equateur_2020_REF 6139 6164 Equateur-2020_21_LEFT_1 1 + TCATCCACAATAGCACATTACAGGT
equateur_2020_REF 6515 6537 Equateur-2020_21_RIGHT_1 1 - AACTGTGGAAGCAAGTCGATCA
equateur_2020_REF 6442 6464 Equateur-2020_22_LEFT_1 2 + TGCACAAAGTATCAGGAACGGG
equateur_2020_REF 6826 6848 Equateur-2020_22_RIGHT_1 2 - AGTTTTCCCGTGGTATTGCTCC
equateur_2020_REF 6765 6788 Equateur-2020_23_LEFT_1 1 + TCAAGATTCACACCACAGTTCCT
equateur_2020_REF 7137 7159 Equateur-2020_23_RIGHT_1 1 - GGTTGAGGACTCGTGGAGATTG
equateur_2020_REF 7073 7095 Equateur-2020_24_LEFT_1 2 + GCAATGGTTCAAGTGCACAGTC
equateur_2020_REF 7454 7476 Equateur-2020_24_RIGHT_1 2 - TAATTAAGCCTAGCTTCCCGCC
equateur_2020_REF 7381 7401 Equateur-2020_25_LEFT_1 1 + TCCCCAAAACCACAGCGAGA
equateur_2020_REF 7767 7789 Equateur-2020_25_RIGHT_1 1 - CGGTTGAGGATTGAAAAGGTGC
equateur_2020_REF 7710 7730 Equateur-2020_26_LEFT_1 2 + TGGCCAACGAGACGACTCAA
equateur_2020_REF 8081 8103 Equateur-2020_26_RIGHT_1 2 - TGATTTGAGGCTGAACTTTGCC
equateur_2020_REF 8006 8030 Equateur-2020_27_LEFT_1 1 + GGCGTTATAATTGCAGTTATCGCT
equateur_2020_REF 8397 8419 Equateur-2020_27_RIGHT_1 1 - TCTACCGGTTCGCAGATCTGAT
equateur_2020_REF 8327 8354 Equateur-2020_28_LEFT_1 2 + CCTTGATTCTACAATCATGACAGTTGT
equateur_2020_REF 8704 8730 Equateur-2020_28_RIGHT_1 2 - TTTTTCAAGGTCGGACATATGTCTTT
equateur_2020_REF 8633 8655 Equateur-2020_29_LEFT_1 1 + CCTCACAAGTACGCGTTCCTAC
equateur_2020_REF 9020 9042 Equateur-2020_29_RIGHT_1 1 - AACTTCCTCGTCATCACAGCAC
equateur_2020_REF 8961 8983 Equateur-2020_30_LEFT_1 2 + GGCGAGACAAGACATCAGAACC
equateur_2020_REF 9335 9357 Equateur-2020_30_RIGHT_1 2 - CCCTCATCAGACCATGAGCATG
equateur_2020_REF 9261 9283 Equateur-2020_31_LEFT_1 1 + TGCTGTCGTTGTTTCAGGGTTA
equateur_2020_REF 9657 9679 Equateur-2020_31_RIGHT_1 1 - GATGGGATGGATCGTTGCTACC
equateur_2020_REF 9591 9613 Equateur-2020_32_LEFT_1 2 + AACCTGCCAAGCATACCTCTTG
equateur_2020_REF 9975 9997 Equateur-2020_32_RIGHT_1 2 - CGTGTCACTAATCGGACTACCC
equateur_2020_REF 9910 9937 Equateur-2020_33_LEFT_1 1 + ACCTTATTATTCAGATTAGGCCCCAAG
equateur_2020_REF 10297 10319 Equateur-2020_33_RIGHT_1 1 - TGCTTGGTGTCTGGAGTATCGA
equateur_2020_REF 10230 10252 Equateur-2020_34_LEFT_1 2 + GAACGTCGTTCCAACAATCGAG
equateur_2020_REF 10611 10633 Equateur-2020_34_RIGHT_1 2 - TGCAAGGATGACTCTCAATGCC
equateur_2020_REF 10536 10560 Equateur-2020_35_LEFT_1 1 + TGCATGGTCAATGACAAGGAATCT
equateur_2020_REF 10934 10956 Equateur-2020_35_RIGHT_1 1 - GATTTGTCGGGTTCTTGGAGCT
equateur_2020_REF 10859 10885 Equateur-2020_36_LEFT_1 2 + TGTTGAGCAGTATTGAAATTGGAACT
equateur_2020_REF 11248 11270 Equateur-2020_36_RIGHT_1 2 - AAGGGTGTCAACTTGGAAGCTG
equateur_2020_REF 11154 11184 Equateur-2020_37_LEFT_1 1 + TCTCTGCTTTCATAATCAGATATATAAGCA
equateur_2020_REF 11537 11563 Equateur-2020_37_RIGHT_1 1 - AGAGGAAGAATTTCAACTGCTTCATC
equateur_2020_REF 11407 11436 Equateur-2020_38_LEFT_1 2 + ACATGTGTTAGGTTTCACAGATTCTATAT
equateur_2020_REF 11801 11824 Equateur-2020_38_RIGHT_1 2 - CAGTGCCTTGAGAAGAATTGGGA
equateur_2020_REF 11735 11761 Equateur-2020_39_LEFT_1 1 + ACGATGTAACTGTTACCAAGTTCTTG
equateur_2020_REF 12112 12138 Equateur-2020_39_RIGHT_1 1 - ACATAGTCCCCATAACCTAAGATGTC
equateur_2020_REF 12049 12073 Equateur-2020_40_LEFT_1 2 + CGAAGGGGTAGATTAAATCGAGGA
equateur_2020_REF 12422 12446 Equateur-2020_40_RIGHT_1 2 - ACCCATCAGACCCTAATATGGAGA
equateur_2020_REF 12350 12376 Equateur-2020_41_LEFT_1 1 + AGGATCCAGTTTGTTCTGATTATCCC
equateur_2020_REF 12744 12766 Equateur-2020_41_RIGHT_1 1 - TGCTTTTAGCACCGTAGCATGT
equateur_2020_REF 12683 12705 Equateur-2020_42_LEFT_1 2 + TTCAAAAACACTGGGGGCATCC
equateur_2020_REF 13051 13073 Equateur-2020_42_RIGHT_1 2 - TAGGCTCGAATACTGCATCCCA
equateur_2020_REF 12965 12988 Equateur-2020_43_LEFT_1 1 + ACCATCCTCCACTTTTCTCAACC
equateur_2020_REF 13353 13375 Equateur-2020_43_RIGHT_1 1 - TTGCTCACGTTCCGTAACTACC
equateur_2020_REF 13279 13303 Equateur-2020_44_LEFT_1 2 + ACTCGCAATGTTCAAACACTTTGT
equateur_2020_REF 13672 13694 Equateur-2020_44_RIGHT_1 2 - TCCCTCCCATATGACCCCTGTA
equateur_2020_REF 13614 13636 Equateur-2020_45_LEFT_1 1 + TCCACCACATAACCTCACACTG
equateur_2020_REF 13989 14011 Equateur-2020_45_RIGHT_1 1 - AGGCAATTGGACCCCATTCAAA
equateur_2020_REF 13914 13938 Equateur-2020_46_LEFT_1 2 + TGCCTGCGGAATCTTTTTAAAACC
equateur_2020_REF 14307 14334 Equateur-2020_46_RIGHT_1 2 - AAACATTTCTCAGGATTCAAGAAGGAT
equateur_2020_REF 14241 14263 Equateur-2020_47_LEFT_1 1 + CGGTAAACCTCTGGATTTCGGA
equateur_2020_REF 14623 14650 Equateur-2020_47_RIGHT_1 1 - AACAGGAGTTGATGATAATAGCCATTT
equateur_2020_REF 14548 14571 Equateur-2020_48_LEFT_1 2 + ACCCTAAGTGCGAAAAACAAACT
equateur_2020_REF 14940 14962 Equateur-2020_48_RIGHT_1 2 - GGCTCCAATAAGAGGTCTTCCC
equateur_2020_REF 14881 14904 Equateur-2020_49_LEFT_1 1 + ACTTGCACAGTTGATTTAGCACA
equateur_2020_REF 15260 15282 Equateur-2020_49_RIGHT_1 1 - TCACTGTTCGAACTGCCTTGAG
equateur_2020_REF 15200 15222 Equateur-2020_50_LEFT_1 2 + AATGTCCTTCCGCAGCCTTAAG
equateur_2020_REF 15568 15592 Equateur-2020_50_RIGHT_1 2 - TTGGATATCTGTAGCCTCAGTGTT
equateur_2020_REF 15493 15515 Equateur-2020_51_LEFT_1 1 + TCTGCACGCGACAGCAATATTA
equateur_2020_REF 15890 15913 Equateur-2020_51_RIGHT_1 1 - TCCACTGCTAATTGGGTCTGTAG
equateur_2020_REF 15827 15849 Equateur-2020_52_LEFT_1 2 + TATCTGGATGGGAGCTAGCCAA
equateur_2020_REF 16197 16219 Equateur-2020_52_RIGHT_1 2 - TAATCTGGCCGCATCTGAGAGT
equateur_2020_REF 16124 16147 Equateur-2020_53_LEFT_1 1 + GCGTTATGTCACGGTTAATGAGT
equateur_2020_REF 16516 16539 Equateur-2020_53_RIGHT_1 1 - GCCAAGTATTTTCGGTTGCTGTT
equateur_2020_REF 16448 16471 Equateur-2020_54_LEFT_1 2 + ACACATGTAAGAGTACAGCCAGT
equateur_2020_REF 16827 16852 Equateur-2020_54_RIGHT_1 2 - ACGGTGTGAGATTATTTGATGACCT
equateur_2020_REF 16741 16766 Equateur-2020_55_LEFT_1 1 + TGTGGTACAGCAAATCCAAAACTAA
equateur_2020_REF 17136 17158 Equateur-2020_55_RIGHT_1 1 - GGACTCAGTAGCTAGCGTGTTG
equateur_2020_REF 17063 17085 Equateur-2020_56_LEFT_1 2 + TGACACTAGCAGAGGGAGAAGG
equateur_2020_REF 17443 17469 Equateur-2020_56_RIGHT_1 2 - CTTAGAAAGACTTTAAGGACCACTGC
equateur_2020_REF 17375 17399 Equateur-2020_57_LEFT_1 1 + ACAGATCGAAATTGTACGAAGCTG
equateur_2020_REF 17758 17786 Equateur-2020_57_RIGHT_1 1 - ACCTGTGGTATAGTACTTTCTCTAATGA
equateur_2020_REF 17695 17722 Equateur-2020_58_LEFT_1 2 + AGTCATTTAACTCAGTATGCTGACTGT
equateur_2020_REF 18073 18097 Equateur-2020_58_RIGHT_1 2 - ACGTTCTTCACAATTGCAATCTCT
equateur_2020_REF 18004 18026 Equateur-2020_59_LEFT_1 1 + GGGACATGGCAAGCTGAGTTTA
equateur_2020_REF 18396 18418 Equateur-2020_59_RIGHT_1 1 - GTCACACATGCTGCATTGTGAA
equateur_2020_REF 18321 18347 Equateur-2020_60_LEFT_1 2 + ACCATTTAAATAACGAAAGGAGTCCC
equateur_2020_REF 18705 18733 Equateur-2020_60_RIGHT_1 2 - CTGTATGAAATAGTAGTTTGCTAGGCAA
equateur_2020_REF 18490 18523 Equateur-2020_61_LEFT_1 1 + GTCTGGGCTCATATTGTTATTGATATAATAATG
equateur_2020_REF 18885 18907 Equateur-2020_61_RIGHT_1 1 - TGTGCGACCATTTTTCCAGGAA
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