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Merged
ChrisgKent merged 8 commits into from
Feb 24, 2026
Merged

Artic workshop training #76

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c8cc558
Added modjadji-tb-panel/400/v1.1.1
ChrisgKent Nov 25, 2025
e710932
Added modjadji-tb-panel/400/v1.1.0
ChrisgKent Nov 25, 2025
9eaf33c
added primerschemes/yale-jcv-a/800/v1.0.0 and primerschemes/yale-jcv-…
ChrisgKent Dec 11, 2025
235bb48
Added description
ChrisgKent Dec 11, 2025
906c21f
Added artic-training-lhf/600/v1.0.0
ChrisgKent Feb 24, 2026
d289f3a
Merge branch 'main' into artic-workshop-training
ChrisgKent Feb 24, 2026
e78c2d5
Corrected fasta in yale-jcv-b/800/v1.0.0
ChrisgKent Feb 24, 2026
1e73b8f
Added description
ChrisgKent Feb 24, 2026
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56 changes: 56 additions & 0 deletions primerschemes/artic-training-lhf/600/v1.0.0/README.md
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# artic-training-lhf 600bp v1.0.0

[![Generic badge](https://img.shields.io/badge/STATUS-validated-green.svg)](https://labs.primalscheme.com/faqs)

[primalscheme labs](https://labs.primalscheme.com/detail/artic-training-lhf/600/v1.0.0)

## Description

A PrimerScheme for a synthetic target (lhf) to be used in ARTICnetwork Training workshops.

## Overviews

## Details

```json
{
"ampliconsize": 600,
"schemeversion": "v1.0.0",
"schemename": "artic-training-lhf",
"primer_bed_md5": "a961d849345287f7058d4bbb59b5b25d",
"reference_fasta_md5": "4ed9c386748a598a66d1cb21d2ba66ef",
"status": "validated",
"citations": [],
"authors": [
"ARTICnetwork"
],
"algorithmversion": "primalscheme",
"species": [
1515699
],
"license": "CC BY-SA 4.0",
"primerclass": "primerschemes",
"infoschema": "v2.1.0",
"articbedversion": "v3.0",
"collections": [],
"links": {
"protocols": [],
"validation": [],
"homepage": [],
"vendors": [],
"misc": []
},
"refselect": null,
"description": "A PrimerScheme for a synthetic target (lhf) to be used in ARTICnetwork Training workshops.",
"derivedfrom": null,
"contactinfo": null
}
```



------------------------------------------------------------------------

This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/)

![](https://i.creativecommons.org/l/by-sa/4.0/88x31.png)
32 changes: 32 additions & 0 deletions primerschemes/artic-training-lhf/600/v1.0.0/info.json
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{
"ampliconsize": 600,
"schemeversion": "v1.0.0",
"schemename": "artic-training-lhf",
"primer_bed_md5": "a961d849345287f7058d4bbb59b5b25d",
"reference_fasta_md5": "4ed9c386748a598a66d1cb21d2ba66ef",
"status": "validated",
"citations": [],
"authors": [
"ARTICnetwork"
],
"algorithmversion": "primalscheme",
"species": [
1515699
],
"license": "CC BY-SA 4.0",
"primerclass": "primerschemes",
"infoschema": "v2.1.0",
"articbedversion": "v3.0",
"collections": [],
"links": {
"protocols": [],
"validation": [],
"homepage": [],
"vendors": [],
"misc": []
},
"refselect": null,
"description": "A PrimerScheme for a synthetic target (lhf) to be used in ARTICnetwork Training workshops.",
"derivedfrom": null,
"contactinfo": null
}
25 changes: 25 additions & 0 deletions primerschemes/artic-training-lhf/600/v1.0.0/primer.bed
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# artic-bed-version v3.0
lhfv_reference 1 23 LHFV_1_LEFT_1 1 + TGACTGAGTGCGTATGTCTGCA
lhfv_reference 1 23 LHFV_1_LEFT_2 1 + TGACTGAGTGCGTATGTCTGCG
lhfv_reference 661 686 LHFV_1_RIGHT_1 1 - ATTCAGCCTAATACACGCCTCATTG
lhfv_reference 661 683 LHFV_1_RIGHT_2 1 - CAGCCTAATACACGCCCCATTG
lhfv_reference 661 684 LHFV_1_RIGHT_3 1 - CCAGCCTAATACACGCCTCATTG
lhfv_reference 543 565 LHFV_2_LEFT_1 2 + GTGTAACGAAACATGGCAGCGT
lhfv_reference 544 565 LHFV_2_LEFT_2 2 + TGTAACGAGACATGGCAGCGT
lhfv_reference 1168 1192 LHFV_2_RIGHT_1 2 - AATAACAGGTTGGCGTGATTTGCT
lhfv_reference 1168 1190 LHFV_2_RIGHT_2 2 - TGACAGGTTGGTGTGATTTGCG
lhfv_reference 1042 1070 LHFV_3_LEFT_1 1 + CAAAATGAATAGCAGTTGATCGTGGAAA
lhfv_reference 1702 1725 LHFV_3_RIGHT_1 1 - ACAGGCTGGTGTGACTTTCTCTG
lhfv_reference 1702 1725 LHFV_3_RIGHT_2 1 - ACGGGCTGGTGTGACTTTCTATG
lhfv_reference 1663 1689 LHFV_4_LEFT_1 2 + GCAACAACAATATGCAATGAGACGTG
lhfv_reference 1663 1689 LHFV_4_LEFT_2 2 + GCAAGAACAATATGCAATGAGACGTG
lhfv_reference 1663 1689 LHFV_4_LEFT_3 2 + GCAAGAACGATATGCAATGAGACGTG
lhfv_reference 1667 1689 LHFV_4_LEFT_4 2 + GGACGATATGCAACGAGACGTG
lhfv_reference 2323 2347 LHFV_4_RIGHT_1 2 - CGGTTGTTTCGCGTTATCCCTTTG
lhfv_reference 2323 2346 LHFV_4_RIGHT_2 2 - GGCTGGTTCGCATTATCCCTTTG
lhfv_reference 2250 2280 LHFV_5_LEFT_1 1 + GCCTTTAATATGCCAGAATTTTATCGTTGA
lhfv_reference 2895 2923 LHFV_5_RIGHT_1 1 - CAGTTCAATGGGAAGCTAAACTTTTTCG
lhfv_reference 2895 2923 LHFV_5_RIGHT_2 1 - CAGTTCAATGGGAAGTTAAACCTTTTCG
lhfv_reference 2470 2492 LHFV_6_LEFT_1 2 + GCACCCAGTTTTGTGAAGGAGG
lhfv_reference 2468 2492 LHFV_6_LEFT_2 2 + TGGCTCCCAGTTTTGTGAATGAAG
lhfv_reference 3083 3105 LHFV_6_RIGHT_1 2 - CAAGGTAAACCACACGACAGCC
53 changes: 53 additions & 0 deletions primerschemes/artic-training-lhf/600/v1.0.0/reference.fasta
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>lhfv_reference
CTGACTGAGTGCGTATGTCTGCGCAAGGACAATTTGCAACGAGACTTGGCAGCGGAAATG
GCAGAGGAAGAGTCATCAACCTGTTATTCGTGTTAGTGTAGCATTGCCCCATGCTTAGGC
AATGCCATTAATTTGCCAAAATCAGAATGAATAAGCGAACGACCGGGAGGTAGTACGTGC
CATGTAAGCGGTAACATAGAATATCTGCAAATTGCAAATGGCCAACTAAATCGCGAACGG
CCAGCAAGACTTTGAATTATTGCAGGTCGTATGAATAGAGAACAACGGCGCGCGAGACTA
TTGACTGGTTAAGGAGATGGAGCGCGAAGATATCACGCATTAGTAAATACAATCTCATTG
ACAAGTAATCTGCAAGTAAAAGATCCGGTCTACTTATAACTGACGAGTGAATAAAGAACG
GATCGCGATGGAATCACATGCTGATTTTATCGAGTTAGACTAAGTCGAACGAATCACCTA
CCACATACTATTATAGGCTATCAATGAGTAACAGACTCAACAATTAGAATAAGCACGAAC
TATCTGTAACGAGACATGGCAGCGTAAATGGCAACGAAAAAGCCACCAACCCGTGATCAG
GGTGAGTGTTGCTCTACCGCATGCATAGGCAATGCCACTTATATGTCAAAATACGGTGGT
TCAATGAGGCGTGTATTAGGCTGAATTAGAATAAACGCGAGAGGTCCAGCGTTGAGAAGA
TTTTCAACGTGACTGAGGTTATACTATTTCCGATGTTGATGCCAGTTAGAATGTTAATCA
GTTTGCTCGCATTGCCTAATAGTGTCACCGCATTTCCACCCAACCACATGAATTCCGAGC
TAGTGAGCGGTAGATGGCCAATGACGAAGTCGGTATACTGCTCTGAAAAGCAACAATTGA
GCACGCTATGCCGTCACAAAACTGACTCATCGCCAATGCCAAAGCATTTGAGACCTGACA
ACCTCAAGTCTTACAGGTATAGCCACATATACTAATACCACCTGAACTGGAGATGGAGTA
CTGAATAACTATGTGCTGTCGCCAAAATGAATAGCAGTTGATCGTGGAAAGGCCCTACTA
GGTCTCGTAGATGGCGAGATGTAGTGTTTGCCACGCCCGTGATTGAGCGCGTACGATTTG
TAACGAAACCTGGCAACGCAAGTGGCAGCGCAAATCACACCAACCTGTCATTCGGGTCTC
CGTGGCTTTGCCACACGCATAAGCCATGCCGCTAATATGCCAAAACTTCCAGGTGCGCTA
GACACACGAATGGGAGCTGCTGTGTCAAATGGAAACCAGAGTGTCAACATAGTGTCAACT
ACTCGCGTAACAGCGGGCGACACAGAGGAGTGCAGTAGTAGCCCGAGATTAGAGAGAAGC
GTTAACGATTATGGAAGTCATACGAGTTTCTGGAGAGAATCAGATGGAATCCGAGCAGGT
CGAGAACTGTATTAATGGTTTTCAGCGGGAGCCGATCGACGAGATGATATGCAGCTAGGG
ACGGGCGAACACGTAAACCGTGGTACAACAACATTCTATCAAGAGCACAGTTGTCCAAAA
TATCAACGAGGAAATAGGCCACACGAGCTTGGCGTCACACTCGGAGGATTCACTCGCTTC
TCACAGTGAGGTCGAAAACACCGAAGAAAACTCAGAGGACTGAGCAAGAACAATATGCAA
TGAGACGTGGCAACGGAAATGGCAGAGAAAGTCACACCAGCCTGTCATAAGGGTCTCCGT
CGCACTTCCGCACGCATAAGCAATGCCGTTGATTTGCCAGAATACACACCGGGAGGAATG
AAACGAAGGCAGGCAAAATATCTAGCAAAATGAACCTGCACGTACAGGGATTAATTGACA
GAACGAGCCTGCACGCACCTGTGCTATGCCGGCCAGGATATAGCAGAATGAACCGGCAAG
GACGTCTGTTGTTGAGGAGACTGTAGAACGAATGCAAGTGACGCATTGATCGACAATCAG
ACAGGTAGAGCGAATATGCGAGTGATCGACTCGGGCAATCAATATCAACACTCAGAGACA
GTGTAAAAGTGGATTGGCAAGCTCGTAACTGGCAAGAGGCGAAATTTGTGAGTAGCAGCG
GGCAAACGGCGAGCCGGAAGAGCTCGGGGCTCGTAACATTAGTCATTGAGCTCGCACTAT
ATGCAATGAAACCTGGCAACGCAAGTGGCAACGCAAGAGCCATCAGCCAGTTATACGGGT
GTCTGTTGCATTACCCCACGCGTGAGCGATGCCTTTAATATGCCAGAATTTTATCGTTGA
GTGAACCCACGCAAATAAGTCCACACAGTAGCAGAAGTCTTTTCAAAGGGATAATGCGAA
CCAGCCGCAAAGGGAAACTGAATGTCATAATCAGCTTCAGGGTATCGAGTCTTAGCCCTG
TCGACAAGAGCCAATGTTCAGATGGATGAGATTCTCAGATCTGAGCACGTGGGAGGGCGA
TCGCAATCTGGCTCCCAGTTTTGTGAATGAAGATGGCGTCGACCATGTAGGTAGGCTCTG
GCTAATCCTGCACGTACCATCGATGGAGAATAGGCCACGTAACTAATCAACACGCAGAAC
TGAACCAGGGCAGTGGAGTTGTAAACAGCTGTGGAGCGTAATTAAGCGCGCACGATATGC
AACGAAACTTGGCAGCGCAAGTGGCAGCGGAAGTCTCATCAACCTGTTATTCGAGTAAGT
GTCGCATTACCGCACGCGTAGGCGATGCCTCTTATTTGTCAGAACTCCATTAAGTCCTGA
GTTCGCCTAGCAATCACTTGTCATACGGAAGAAACGGAGGAGCCAGAAGAGTGCCAACTG
CAAAACTCGTTGGCCTCTCATTCGCTAGCCAGTCACGCTCGGACGATATGTGATCAGACC
AATGAAACTTGGCAGCGAAAAAGTTTAGCTTCCCATTGAACTGTTGTCATCACAACAGAA
CGGGCAACTAACGAGACTGTGGTTCAACGGAAGGCTAGAACGATATGCTGAGCCCGTACA
ATCTGCAATGAAACGTGGCAAAGGAAATGGCAGCGTAAATCTCATCAGCCAGTAATTAGA
GTTAGTGTAGCTTTACCACACGCGGCTGTCGTGTGGTTTACCTTGAC
2 changes: 2 additions & 0 deletions primerschemes/artic-training-lhf/600/v1.0.0/work/plot.html
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