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Merged
ChrisgKent merged 2 commits into from
Mar 31, 2026
Merged

Scheme addition for porcine circovirus 2 #78

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8616aac
Scheme addition for porcine circovirus 2
J1mmmmmm Mar 3, 2026
9c586d9
Merge pull request #1 from J1mmmmmm/J1mmmmmm-patch-1
J1mmmmmm Mar 3, 2026
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52 changes: 52 additions & 0 deletions primerschemes/bioassets-cgm-pcv2/700/v1.0.0/README.md
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# bioassets-cgm-pcv2 700bp v1.0.0

[![Generic badge](https://img.shields.io/badge/STATUS-draft-blue.svg)](https://labs.primalscheme.com/faqs)

[primalscheme labs](https://labs.primalscheme.com/detail/bioassets-cgm-pcv2/700/v1.0.0)

## Overviews

## Details

```json
{
"ampliconsize": 700,
"schemeversion": "v1.0.0",
"schemename": "bioassets-cgm-pcv2",
"primer_bed_md5": "eaa8467b4ce7e57ebae0e246f465a11a",
"reference_fasta_md5": "d0ac088fd17608f42b9807019649afbb",
"status": "draft",
"citations": [],
"authors": [
"BioAssets Corporation"
],
"algorithmversion": "ps:330",
"species": [
85708
],
"license": "CC BY-SA 4.0",
"primerclass": "primerschemes",
"infoschema": "v2.1.0",
"articbedversion": "v3.0",
"collections": [],
"links": {
"protocols": [],
"validation": [],
"homepage": [],
"vendors": [],
"misc": []
},
"refselect": null,
"description": null,
"derivedfrom": null,
"contactinfo": null
}
```



------------------------------------------------------------------------

This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/)

![](https://i.creativecommons.org/l/by-sa/4.0/88x31.png)
32 changes: 32 additions & 0 deletions primerschemes/bioassets-cgm-pcv2/700/v1.0.0/info.json
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{
"ampliconsize": 700,
"schemeversion": "v1.0.0",
"schemename": "bioassets-cgm-pcv2",
"primer_bed_md5": "eaa8467b4ce7e57ebae0e246f465a11a",
"reference_fasta_md5": "d0ac088fd17608f42b9807019649afbb",
"status": "draft",
"citations": [],
"authors": [
"bioassets-corporation"
],
"algorithmversion": "ps:330",
"species": [
85708
],
"license": "CC BY-SA 4.0",
"primerclass": "primerschemes",
"infoschema": "v2.1.0",
"articbedversion": "v3.0",
"collections": [],
"links": {
"protocols": [],
"validation": [],
"homepage": [],
"vendors": [],
"misc": []
},
"refselect": null,
"description": null,
"derivedfrom": null,
"contactinfo": null
}
9 changes: 9 additions & 0 deletions primerschemes/bioassets-cgm-pcv2/700/v1.0.0/plot.html
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13 changes: 13 additions & 0 deletions primerschemes/bioassets-cgm-pcv2/700/v1.0.0/primer.bed
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# artic-bed-version v3.0
# pc=PrimerCountInMSA
NC_005148.1 2 25 246c4c96_1_LEFT_1 1 + GCCCAGCAAGAAGAGTGGAAGAA pc=87
NC_005148.1 1 25 246c4c96_1_LEFT_2 1 + TGCCCAGCAAAAAGAATGGAAGAA pc=115
NC_005148.1 1 25 246c4c96_1_LEFT_3 1 + TGCCCAGCAAGAAGAATGGAAGAA pc=182
NC_005148.1 769 791 246c4c96_1_RIGHT_1 1 - GAGTACCATTCCAACGGGGTCT pc=409
NC_005148.1 595 619 246c4c96_2_LEFT_1 2 + GAAACAAGTGGTGGGATGGTTACC pc=379
NC_005148.1 1363 1387 246c4c96_2_RIGHT_1 2 - AGGTTAAGGTTGAATTCTGGCCCT pc=333
NC_005148.1 997 1029 246c4c96_3_LEFT_1 1 + GGGGGTCTTTAAGATTAAATTCTCTGAATTGT pc=347
NC_005148.1 1715 1735 246c4c96_3_RIGHT_1 1 - TGCCGAAGTGCGCTGGTAAT pc=404
NC_005148.1 1541 1562 246c4c96_4_LEFT_1 2 + GCGGGTGTTGAAGATGCCATT pc=323
NC_005148.1 1540 1562 246c4c96_4_LEFT_2 2 + GGCGGCTGTTGAAAATGCCATT pc=25
NC_005148.1 425 448 246c4c96_4_RIGHT_1 2 - GCCCGCGGAAATTTCTGACAAAC pc=402
9 changes: 9 additions & 0 deletions primerschemes/bioassets-cgm-pcv2/700/v1.0.0/primer.html
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31 changes: 31 additions & 0 deletions primerschemes/bioassets-cgm-pcv2/700/v1.0.0/reference.fasta
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>NC_005148.1
ATGCCCAGCAAGAAGAATGGAAGAAGCGGACCCCAACCACACAAAAGGTGGGTGTTCACG
CTGAATAATCCTTCCGAAGACGAGCGCAAGAAAATACGGGAGCTTCCAATCTCCCTTTTT
GATTATTTTATTGTTGGCGAGGAGGGTAATGAGGAAGGACGAACACCCCACCTCCAGGGG
TTCGCTAATTTTGTGAAGAAGCAAACATTTAATAAAGTGAAATGGTATTTCGGTGCCCGC
TGCCACATCGAGAAAGCGAAAGGAACTGATCAGCAGAATAAAGAATACTGCAGTAAAGAA
GGCAACTTACTGATGGAATGTGGAGCTCCTAGATCTCAAGGACAACGGAGTGACCTGTCT
ACTGCTGTGAGTACCTTGTTGGAGAGCGGGAGTCTGGTGACCGTTGCAGAGCAGCACCCT
GTAACGTTTGTCAGAAATTTCCGCGGGCTGGCTGAACTTTTGAAAGTGAGCGGGAAAATG
CAGAAGCGTGATTGGAAGACCAATGTACACGTCATTGTGGGGCCACCTGGGTGTGGTAAA
AGCAAATGGGCTGCTAATTTTGCAGACCCGGAAACCACATACTGGAAACCACCTAGAAAC
AAGTGGTGGGACGGTTACCATGGTGAAGAAGTGGTTGTTATTGATGACTTTTATGGCTGG
CTGCCGTGGGATGATCTACTGAGATTGTGTGATCGATATCCATTGACTGTAGAGACTAAA
GGTGGAACTGTACCTTTTTTGGCCCGCAGTATTCTGATTACCAGCAATCAGACCCCGTTG
GAATGGTACTCCTCAACTGCTGTCCCAGCTGTAGAAGCTCTCTATCGGAGGATTACTTCC
TTGGTATTTTGGAAGAATGCTACAGAACAATCCACGGAGGAAGGGGGCCAGTTCGTCACC
CTTTCCCCCCCATGCCCTGAATTTCCATATGAAATAAATTACTGAGTCTTTTTTATCACT
TCGTAATGGTTTTTATTATTCATTTAGGGTTTAAGTGGGGGGTCTTTAAGATTAAATTCT
CTGAATTGTACATACATGGTTACACGGATATTGTAGTCCTGGTCGTATTTACTGTTTTCG
AACGCAGTGCCGAGGCCTACGTGGTCCACATTTCTACTGGTTTGTAGTCTCATCCACAGC
TGATTCCTTTTGTTATTTGGTTGGAAGTAATCAATAGTGGAATCAAGAACAGGTTTGGGT
GTGAAGTAACGGGAGTGGTAGGAGAAGGGTTGGGGGATTGTATGGCGGGAGGAGTAGTTT
ACATAGGGGTCATAGGTTTGGGCTGTGGCCTTTATTACAAAGTTGTCATCTAGAATAATA
GCACTGGATCCAACTCCCCTGTCACCCTGGGTGATCGGGGAGCAGGGCCAGAATTCAACC
TTAACCTTTCTTATTCTGTAGTATTCAAAGGGTATAGAGATTTTGTTGGTCCCCCCTCCC
GGGGGAACAAAGTCGTCAAGATTAAATCTCAGCATGTCCACCGCCCAGGAGGGCGTGCTG
ACTGTGGTAGCCTTGACAGTATATCCGAAGGTGCGGGAGAGGCGGGCGTTGAAGATGCCA
TTTTTCCTTCTCCAGCGGTAACGGTGGCGGGGGTGGACGAGCCAGGGGCGGCGGCGGAGG
ATCTGGCCAAGATGGCTGCGGGGGCGGTGTCTTCTCCTTCGGTAACGCCTCCTTGGATAC
GTCATACCTGAAAACGAAAGAAGTGCGCTGTAAGTATTACCAGCGCACTTCGGCAGCGGC
AGCACCTCGGCAGCACCTCAGCAGCAAC
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